David J Galas

David J Galas

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David J Galas

David J Galas

Publications by authors named "David J Galas"

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48Publications

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Extracting Reproducible Time-Resolved Resting State Networks Using Dynamic Mode Decomposition.

Front Comput Neurosci 2019 31;13:75. Epub 2019 Oct 31.

Department of Biology, University of Washington, Seattle, WA, United States.

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http://dx.doi.org/10.3389/fncom.2019.00075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6834549PMC
October 2019

Computational Inference Software for Tetrad Assembly from Randomly Arrayed Yeast Colonies.

G3 (Bethesda) 2019 07 9;9(7):2071-2088. Epub 2019 Jul 9.

Pacific Northwest Research Institute, Seattle, WA 98122.

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http://dx.doi.org/10.1534/g3.119.400166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6643883PMC
July 2019

Multivariate Analysis of Data Sets with Missing Values: An Information Theory-Based Reliability Function.

J Comput Biol 2019 02 29;26(2):152-171. Epub 2018 Nov 29.

Pacific Northwest Research Institute, Seattle, Washington.

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https://www.liebertpub.com/doi/10.1089/cmb.2018.0179
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http://dx.doi.org/10.1089/cmb.2018.0179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6383577PMC
February 2019

The Information Content of Discrete Functions and Their Application in Genetic Data Analysis.

J Comput Biol 2017 Dec 13;24(12):1153-1178. Epub 2017 Oct 13.

Pacific Northwest Research Institute , Seattle, Washington.

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http://dx.doi.org/10.1089/cmb.2017.0143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5729883PMC
December 2017

Discovering pair-wise genetic interactions: an information theory-based approach.

PLoS One 2014 26;9(3):e92310. Epub 2014 Mar 26.

Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg; Pacific Northwest Diabetes Research Institute, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0092310PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3966778PMC
December 2015

Biological data analysis as an information theory problem: multivariable dependence measures and the shadows algorithm.

J Comput Biol 2015 Nov 3;22(11):1005-24. Epub 2015 Sep 3.

1 Pacific Northwest Diabetes Research Institute , Seattle, Washington.

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http://dx.doi.org/10.1089/cmb.2015.0051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642827PMC
November 2015

Describing the complexity of systems: multivariable "set complexity" and the information basis of systems biology.

J Comput Biol 2014 Feb 30;21(2):118-40. Epub 2013 Dec 30.

1 Pacific Northwest Diabetes Research Institute , Seattle, Washington.

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http://dx.doi.org/10.1089/cmb.2013.0039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904535PMC
February 2014

RCytoscape: tools for exploratory network analysis.

BMC Bioinformatics 2013 Jul 9;14:217. Epub 2013 Jul 9.

Fred Hutchison Cancer Research Institute, Seattle, WA, USA.

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http://dx.doi.org/10.1186/1471-2105-14-217DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751905PMC
July 2013

Comparing the MicroRNA spectrum between serum and plasma.

PLoS One 2012 31;7(7):e41561. Epub 2012 Jul 31.

Institute for Systems Biology, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0041561PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3409228PMC
April 2013

The spectrum of circulating RNA: a window into systems toxicology.

Toxicol Sci 2013 Apr 28;132(2):478-92. Epub 2013 Jan 28.

Institute for Systems Biology, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1093/toxsci/kft014DOI Listing
April 2013

Relations between the set-complexity and the structure of graphs and their sub-graphs.

EURASIP J Bioinform Syst Biol 2012 Sep 21;2012(1):13. Epub 2012 Sep 21.

Institute for Systems Biology, 401 N, Terry Avenue, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1186/1687-4153-2012-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610188PMC
September 2012

The systems biology of neurofibromatosis type 1--critical roles for microRNA.

Exp Neurol 2012 Jun 31;235(2):464-8. Epub 2011 Oct 31.

Department of Neurology and Medical Genetic, National Taiwan University School of Medicine, National Taiwan University, Taipei, Taiwan, ROC.

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http://linkinghub.elsevier.com/retrieve/pii/S001448861100395
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http://dx.doi.org/10.1016/j.expneurol.2011.10.023DOI Listing
June 2012

RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.

Nucleic Acids Res 2012 Mar 22;40(6):e42. Epub 2011 Dec 22.

Institute for Systems Biology, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1093/nar/gkr1248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315322PMC
March 2012

Probabilistic logic methods and some applications to biology and medicine.

J Comput Biol 2012 Mar;19(3):316-36

The Institute for Systems Biology, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1089/cmb.2011.0234DOI Listing
March 2012

An integrative approach to inferring biologically meaningful gene modules.

BMC Syst Biol 2011 Jul 26;5:117. Epub 2011 Jul 26.

Institute for Systems Biology, Seattle, WA 98109, USA.

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http://dx.doi.org/10.1186/1752-0509-5-117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156758PMC
July 2011

MicroRNA as biomarkers and regulators in B-cell chronic lymphocytic leukemia.

Proc Natl Acad Sci U S A 2011 Apr 1;108(16):6573-8. Epub 2011 Apr 1.

Laboratory of Experimental Hemato-Oncology, Centre de Recherche Public-Santé, L-1526 Luxembourg.

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http://dx.doi.org/10.1073/pnas.1019557108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081030PMC
April 2011

Export of microRNAs and microRNA-protective protein by mammalian cells.

Nucleic Acids Res 2010 Nov 7;38(20):7248-59. Epub 2010 Jul 7.

Institute for Systems Biology, 1441 N. 34th Street, Seattle, WA 98103, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978372PMC
November 2010

The microRNA spectrum in 12 body fluids.

Clin Chem 2010 Nov 16;56(11):1733-41. Epub 2010 Sep 16.

Institute for Systems Biology, 1441 North 34th St., Seattle, WA 98103, USA.

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http://dx.doi.org/10.1373/clinchem.2010.147405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4846276PMC
November 2010

Markov logic networks in the analysis of genetic data.

J Comput Biol 2010 Nov 20;17(11):1491-508. Epub 2010 Oct 20.

Institute for Systems Biology, Seattle, Washington 98103, USA.

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http://dx.doi.org/10.1089/cmb.2010.0044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122930PMC
November 2010

A systems-biology approach to modular genetic complexity.

Chaos 2010 Jun;20(2):026102

Institute for Systems Biology, 1441 North 34th Street, Seattle, Washington 98103, USA.

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http://dx.doi.org/10.1063/1.3455183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909309PMC
June 2010

Biological Information as Set-Based Complexity.

IEEE Trans Inf Theory 2010 Feb 25;56(2):667-677. Epub 2010 Feb 25.

Institute for Systems Biology, Seattle, WA, USA.

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http://dx.doi.org/10.1109/TIT.2009.2037046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5110148PMC
February 2010

Maximal extraction of biological information from genetic interaction data.

PLoS Comput Biol 2009 Apr 3;5(4):e1000347. Epub 2009 Apr 3.

Institute for Systems Biology, Seattle, Washington, United States of America.

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https://pdfs.semanticscholar.org/0837/cd8077f797e8e9493e342d
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http://dx.plos.org/10.1371/journal.pcbi.1000347
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http://dx.doi.org/10.1371/journal.pcbi.1000347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2659753PMC
April 2009

Circulating microRNAs, potential biomarkers for drug-induced liver injury.

Proc Natl Acad Sci U S A 2009 Mar 25;106(11):4402-7. Epub 2009 Feb 25.

Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA.

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http://dx.doi.org/10.1073/pnas.0813371106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2657429PMC
March 2009

Systems biology at the Institute for Systems Biology.

Brief Funct Genomic Proteomic 2008 Jul 25;7(4):239-48. Epub 2008 Jun 25.

Institute for Systems Biology, Seattle, WA 98103, USA.

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http://dx.doi.org/10.1093/bfgp/eln027DOI Listing
July 2008

Isothermal DNA amplification coupled with DNA nanosphere-based colorimetric detection.

Anal Chem 2005 Dec;77(24):7984-92

Keck Graduate Institute of Applied Life Sciences, and Harvey Mudd College, Claremont, California 91711, USA.

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http://dx.doi.org/10.1021/ac051364iDOI Listing
December 2005

Duplication models for biological networks.

J Comput Biol 2003 ;10(5):677-87

Department of Mathematics, University of California at San Diego, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1089/106652703322539024DOI Listing
June 2004

An historical perspective on genomic technologies.

Curr Issues Mol Biol 2003 Oct;5(4):123-7

Keck Graduate Institute, 535 Watson Drive, Claremont, CA 91711, USA.

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October 2003

Global science and U.S. security.

Science 2003 Jun;300(5627):1847

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http://dx.doi.org/10.1126/science.300.5627.1847DOI Listing
June 2003

Isothermal reactions for the amplification of oligonucleotides.

Proc Natl Acad Sci U S A 2003 Apr 4;100(8):4504-9. Epub 2003 Apr 4.

Keck Graduate Institute of Applied Life Science, 535 Watson Drive, Claremont, CA 91711, USA.

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http://dx.doi.org/10.1073/pnas.0730811100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC404692PMC
April 2003

A duplication growth model of gene expression networks.

Bioinformatics 2002 Nov;18(11):1486-93

Keck Graduate Institute of Applied Life Sciences, 535 Watson Drive, Claremont, CA 91711, USA.

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http://dx.doi.org/10.1093/bioinformatics/18.11.1486DOI Listing
November 2002

Defining the mandate of proteomics in the post-genomics era: workshop report.

Mol Cell Proteomics 2002 Oct;1(10):763-80

College of Pharmacy, University of Michigan, Ann Arbor, MI 48109-1065, USA.

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October 2002