Publications by authors named "David E Wemmer"

100Publications

Unconstrained peptoid tetramer exhibits a predominant conformation in aqueous solution.

Biopolymers 2019 Jun 5;110(6):e23267. Epub 2019 Mar 5.

The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, California.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bip.23267DOI Listing
June 2019

Rotaxane probes for protease detection by Xe hyperCEST NMR.

Chem Commun (Camb) 2017 Jan;53(6):1076-1079

Department of Chemistry, University of California, Berkeley, Berkeley, CA 94720, USA. and Materials Sciences Division, Lawrence Berkeley National Laboratories, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c6cc09302gDOI Listing
January 2017

Role of the σ Activator Interacting Domain in Bacterial Transcription Initiation.

J Mol Biol 2016 11 11;428(23):4669-4685. Epub 2016 Oct 11.

Biophysics Graduate Group, University of California, Berkeley, CA 94720, USA; Department of Chemistry, University of California, Berkeley, CA 94720, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2016.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5116005PMC
November 2016

Solid-State NMR Studies Reveal Native-like β-Sheet Structures in Transthyretin Amyloid.

Biochemistry 2016 09 7;55(37):5272-8. Epub 2016 Sep 7.

Department of Chemistry, University of California , Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.biochem.6b00649DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035109PMC
September 2016

(129)Xe NMR Relaxation-Based Macromolecular Sensing.

J Am Chem Soc 2016 08 29;138(31):9747-50. Epub 2016 Jul 29.

Materials Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/jacs.6b02758DOI Listing
August 2016

Targeted Molecular Imaging of Cancer Cells Using MS2-Based (129)Xe NMR.

Bioconjug Chem 2016 08 1;27(8):1796-801. Epub 2016 Aug 1.

Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.bioconjchem.6b00275DOI Listing
August 2016

Cellulose Deficiency Is Enhanced on Hyper Accumulation of Sucrose by a H+-Coupled Sucrose Symporter.

Plant Physiol 2016 05 24;171(1):110-24. Epub 2016 Mar 24.

Energy Biosciences Institute (T.H.Y., H.S., D.E.W., C.R.S.), Department of Plant and Microbial Biology (T.H.Y., C.R.S.), and Department of Chemistry (H.S., D.E.W), University of California, Berkeley, California 94720.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.16.00302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4854719PMC
May 2016

Structural Changes Associated with Transthyretin Misfolding and Amyloid Formation Revealed by Solution and Solid-State NMR.

Biochemistry 2016 Apr 23;55(13):1941-4. Epub 2016 Mar 23.

Department of Chemistry, University of California , Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.biochem.6b00164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4904294PMC
April 2016

Nondisruptive Dissolution of Hyperpolarized (129)Xe into Viscous Aqueous and Organic Liquid Crystalline Environments.

Angew Chem Int Ed Engl 2016 Apr 8;55(15):4666-70. Epub 2016 Mar 8.

Department of Chemistry, University of California, Berkeley, CA, 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/anie.201511539DOI Listing
April 2016

Rotaxane-mediated suppression and activation of cucurbit[6]uril for molecular detection by (129)Xe hyperCEST NMR.

Chem Commun (Camb) 2016 Feb;52(15):3119-22

Department of Chemistry, University of California, Berkeley, Berkeley, CA 94720, USA and Materials Sciences Division, Lawrence Berkeley National Laboratories, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c5cc10410fDOI Listing
February 2016

PHO13 deletion-induced transcriptional activation prevents sedoheptulose accumulation during xylose metabolism in engineered Saccharomyces cerevisiae.

Metab Eng 2016 Mar 25;34:88-96. Epub 2015 Dec 25.

Department of Food Science and Human Nutrition, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ymben.2015.12.007DOI Listing
March 2016

Identification of MEDIATOR16 as the Arabidopsis COBRA suppressor MONGOOSE1.

Proc Natl Acad Sci U S A 2015 Dec 11;112(52):16048-53. Epub 2015 Dec 11.

Energy Biosciences Institute, University of California, Berkeley, CA 94720; Plant and Microbial Biology Department, University of California, Berkeley, CA 94720;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1521675112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4703005PMC
December 2015

Investigation of DOTA-Metal Chelation Effects on the Chemical Shift of (129) Xe.

Chemphyschem 2015 Dec 7;16(17):3573-7. Epub 2015 Oct 7.

Department of Chemistry, University of California, Berkeley, CA, 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cphc.201500806DOI Listing
December 2015

A facile method for expression and purification of (15)N isotope-labeled human Alzheimer's β-amyloid peptides from E. coli for NMR-based structural analysis.

Protein Expr Purif 2015 Dec 29;116:82-9. Epub 2015 Jul 29.

Department of Chemistry, University of California, Berkeley, CA 94720, USA; Department of Bioengineering, University of California, Berkeley, CA 94720, USA; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA; QB3 Institute, University of California, Berkeley, CA 94720, USA; Chemical Sciences Division, Lawrence Berkeley National Labs, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pep.2015.07.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161032PMC
December 2015

Solution structure of the porcine sapovirus VPg core reveals a stable three-helical bundle with a conserved surface patch.

Biochem Biophys Res Commun 2015 Apr 6;459(4):610-6. Epub 2015 Mar 6.

Department of Chemistry, Chonnam National University, Gwangju 500-757, Republic of Korea. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bbrc.2015.02.156DOI Listing
April 2015

The Arabidopsis COBRA protein facilitates cellulose crystallization at the plasma membrane.

J Biol Chem 2014 Dec 20;289(50):34911-20. Epub 2014 Oct 20.

From the Energy Biosciences Institute, the Plant and Microbial Biology Department, and Department of Arid Land Agriculture, Faculty of Meteorology, Environment and Arid Land Agriculture, King Abdulaziz University, 21589 Jeddah, Saudi Arabia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M114.607192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263889PMC
December 2014

DNA recognition by a σ(54) transcriptional activator from Aquifex aeolicus.

J Mol Biol 2014 Oct 23;426(21):3553-68. Epub 2014 Aug 23.

Department of Chemistry, University of California, MC-1460, Berkeley, CA 94720, USA; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2014.08.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4188747PMC
October 2014

Inhibition of master transcription factors in pluripotent cells induces early stage differentiation.

Proc Natl Acad Sci U S A 2014 Feb 16;111(5):1778-83. Epub 2014 Jan 16.

Department of Molecular Cell Biology, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Suwon 440-746, Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1323386111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3918783PMC
February 2014

Comparison of structure determination methods for intrinsically disordered amyloid-β peptides.

J Phys Chem B 2014 Jun 28;118(24):6405-16. Epub 2014 Jan 28.

Graduate Group in Biophysics , Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/jp410275yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066902PMC
June 2014

Hyperpolarized xenon-based molecular sensors for label-free detection of analytes.

J Am Chem Soc 2014 Jan 18;136(1):164-8. Epub 2013 Dec 18.

Department of Chemistry and California Institute for Quantitative Biosciences and §Biophysics Graduate Group and California Institute for Quantitative Biosciences, University of California Berkeley , Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja406760rDOI Listing
January 2014

Heterogeneous seeding of a prion structure by a generic amyloid form of the fungal prion-forming domain HET-s(218-289).

J Biol Chem 2013 Oct 28;288(41):29604-12. Epub 2013 Aug 28.

From the Department of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37235-1634.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M113.505511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3795258PMC
October 2013

Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.

Elife 2013 Jul 30;2:e00813. Epub 2013 Jul 30.

Department of Molecular and Cell Biology , University of California, Berkeley , Berkeley , United States ; California Institute for Quantitative Biosciences , University of California, Berkeley , Berkeley , United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7554/eLife.00813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3728621PMC
July 2013

Structure, function, and tethering of DNA-binding domains in σ⁵⁴ transcriptional activators.

Biopolymers 2013 Dec;99(12):1082-96

Department of Chemistry and QB3 Institute, University of California, Berkeley, CA, 94720-1460.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bip.22333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932985PMC
December 2013

Differences in β-strand populations of monomeric Aβ40 and Aβ42.

Biophys J 2013 Jun;104(12):2714-24

Graduate Group in Biophysics, University of California, Berkeley, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.bpj.2013.04.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3686344PMC
June 2013

Molecular imaging of cancer cells using a bacteriophage-based 129Xe NMR biosensor.

Angew Chem Int Ed Engl 2013 Apr 28;52(18):4849-53. Epub 2013 Mar 28.

Department of Chemistry, University of California, Berkeley, CA 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/anie.201300170DOI Listing
April 2013

Solution-state 2D NMR spectroscopy of plant cell walls enabled by a dimethylsulfoxide-d6/1-ethyl-3-methylimidazolium acetate solvent.

Anal Chem 2013 Mar 4;85(6):3213-21. Epub 2013 Mar 4.

Energy Biosciences Institute, University of California, Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac303529vDOI Listing
March 2013

Structural mechanism of GAF-regulated σ(54) activators from Aquifex aeolicus.

J Mol Biol 2013 Jan 1;425(1):156-70. Epub 2012 Nov 1.

Graduate Group in Biophysics and Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2012.10.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3544215PMC
January 2013

Characterization of Miscanthus giganteus lignin isolated by ethanol organosolv process under reflux condition.

J Agric Food Chem 2012 Aug 10;60(33):8203-12. Epub 2012 Aug 10.

Energy Biosciences Institute, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/jf302409dDOI Listing
August 2012

HyperCEST detection of a 129Xe-based contrast agent composed of cryptophane-A molecular cages on a bacteriophage scaffold.

Magn Reson Med 2013 May 12;69(5):1245-52. Epub 2012 Jul 12.

Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/mrm.24371DOI Listing
May 2013

Structural elucidation and functional characterization of the Hyaloperonospora arabidopsidis effector protein ATR13.

PLoS Pathog 2011 Dec 15;7(12):e1002428. Epub 2011 Dec 15.

Department of Plant and Microbial Biology, University of California, Berkeley, California, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.ppat.1002428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3240608PMC
December 2011

Band-selective chemical exchange saturation transfer imaging with hyperpolarized xenon-based molecular sensors.

J Magn Reson 2011 Dec 13;213(1):14-21. Epub 2011 Jul 13.

Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmr.2011.06.027DOI Listing
December 2011

Homogeneous and heterogeneous tertiary structure ensembles of amyloid-β peptides.

Biochemistry 2011 Sep 15;50(35):7612-28. Epub 2011 Aug 15.

Graduate Group in Biophysics, University of California, Berkeley, California 94720, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/bi200732xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3474852PMC
September 2011

Relaxivity of gadolinium complexes detected by atomic magnetometry.

Magn Reson Med 2011 Aug 23;66(2):605-8. Epub 2011 Mar 23.

Materials Sciences Division, Lawrence Berkeley National Laboratory, Department of Chemistry, University of California, Berkeley, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/mrm.22811DOI Listing
August 2011

The mechanism of linkage-specific ubiquitin chain elongation by a single-subunit E2.

Cell 2011 Mar;144(5):769-81

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cell.2011.01.035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072108PMC
March 2011

A sterile alpha-motif domain in NafY targets apo-NifDK for iron-molybdenum cofactor delivery via a tethered domain.

J Biol Chem 2011 Feb 14;286(8):6321-8. Epub 2010 Dec 14.

Department of Biochemistry, Arizona College of Osteopathic Medicine, Midwestern University Arizona, Glendale, Arizona 85308, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M110.168732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3057858PMC
February 2011

MRI thermometry based on encapsulated hyperpolarized xenon.

Chemphyschem 2010 Nov;11(16):3529-33

Lawrence Berkeley National Laboratory, Materials Sciences Division, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cphc.201000507DOI Listing
November 2010

Probing the conformation of a prion protein fibril with hydrogen exchange.

J Biol Chem 2010 Oct 2;285(42):32303-11. Epub 2010 Aug 2.

Department of Chemistry, University of California, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://www.jbc.org/lookup/doi/10.1074/jbc.M110.114504
Publisher Site
http://dx.doi.org/10.1074/jbc.M110.114504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2952231PMC
October 2010

Facile dimer synthesis for DNA-binding polyamide ligands.

Org Lett 2010 Aug;12(15):3488-90

Chemimstry Department, University of California, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ol1013262DOI Listing
August 2010

Xenon-based molecular sensors in lipid suspensions.

J Magn Reson 2010 Aug 13;205(2):242-6. Epub 2010 May 13.

Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmr.2010.05.005DOI Listing
August 2010

The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems.

J Bacteriol 2010 Aug 16;192(16):4089-102. Epub 2010 Apr 16.

Department of Plant & Microbial Biology, University of California, Berkeley, CA 94720-3102, USA.

View Article

Download full-text PDF

Source
http://jb.asm.org/content/early/2010/04/16/JB.00201-10.full.
Web Search
http://jb.asm.org/cgi/doi/10.1128/JB.00201-10
Publisher Site
http://dx.doi.org/10.1128/JB.00201-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2916427PMC
August 2010

A xenon-based molecular sensor assembled on an MS2 viral capsid scaffold.

J Am Chem Soc 2010 May;132(17):5936-7

College of Chemistry, University of California, Berkeley, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja100319fDOI Listing
May 2010

Effects of buffer loading for electrospray ionization mass spectrometry of a noncovalent protein complex that requires high concentrations of essential salts.

J Am Soc Mass Spectrom 2010 Jun 8;21(6):1045-9. Epub 2010 Feb 8.

Department of Chemistry, University of California-Berkeley, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jasms.2010.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2893594PMC
June 2010

A structural basis for H-NOX signaling in Shewanella oneidensis by trapping a histidine kinase inhibitory conformation.

Proc Natl Acad Sci U S A 2009 Nov 16;106(47):19753-60. Epub 2009 Nov 16.

Department of Chemistry, University of California, Berkeley, CA 94720-3220, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0911645106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785238PMC
November 2009

Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point.

J Mol Biol 2009 Jul 5;390(1):70-82. Epub 2009 May 5.

Department of Chemistry, University of California, Berkeley, 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2009.04.070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3195411PMC
July 2009

Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.

J Mol Biol 2008 Dec 17;384(5):1058-75. Epub 2008 Oct 17.

Graduate Group in Biophysics, Physical Biosciences Division, Lawrence Berkeley National Laboratory and the Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2008.10.024DOI Listing
December 2008

Temperature response of 129Xe depolarization transfer and its application for ultrasensitive NMR detection.

Phys Rev Lett 2008 Jun 25;100(25):257603. Epub 2008 Jun 25.

Department of Chemistry, University of California, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1103/PhysRevLett.100.257603DOI Listing
June 2008

Temperature-controlled molecular depolarization gates in nuclear magnetic resonance.

Angew Chem Int Ed Engl 2008 ;47(23):4316-20

Lawrence Berkeley National Laboratory, Materials Sciences Division, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/anie.200800382DOI Listing
July 2008

Anionic charge is prioritized over geometry in aluminum and magnesium fluoride transition state analogs of phosphoryl transfer enzymes.

J Am Chem Soc 2008 Mar 5;130(12):3952-8. Epub 2008 Mar 5.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja078000nDOI Listing
March 2008

Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs.

J Am Chem Soc 2007 Aug 8;129(34):10466-73. Epub 2007 Aug 8.

Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja072276dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2536688PMC
August 2007

NMR structure of the N-terminal domain of the replication initiator protein DnaA.

J Struct Funct Genomics 2007 Mar 7;8(1):11-7. Epub 2007 Aug 7.

Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s10969-007-9022-7DOI Listing
March 2007

Structural basis of DNA recognition by the alternative sigma-factor, sigma54.

J Mol Biol 2007 Jun 12;369(4):1070-8. Epub 2007 Apr 12.

Physical Biosciences Division, Lawrence Berkeley National Laboratory and the Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2007.04.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680387PMC
June 2007

Shewanella oneidensis MR-1 fluxome under various oxygen conditions.

Appl Environ Microbiol 2007 Feb 10;73(3):718-29. Epub 2006 Nov 10.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.01532-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1800752PMC
February 2007

Molecular imaging using a targeted magnetic resonance hyperpolarized biosensor.

Science 2006 Oct;314(5798):446-9

Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1131847DOI Listing
October 2006

Sensitivity enhancement by exchange mediated magnetization transfer of the xenon biosensor signal.

J Magn Reson 2007 Jan 13;184(1):72-7. Epub 2006 Oct 13.

Materials Science Division, Lawrence Berkeley National Laboratory, USA; Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmr.2006.09.010DOI Listing
January 2007

A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.

J Mol Biol 2006 Aug 27;361(2):312-26. Epub 2006 Jun 27.

Howard Hughes Medical Institute, Department of Molecular and Cell Biology, Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S002228360600728
Publisher Site
http://dx.doi.org/10.1016/j.jmb.2006.06.017DOI Listing
August 2006

Structural studies of MJ1529, an O6-methylguanine-DNA methyltransferase.

Magn Reson Chem 2006 Jul;44 Spec No:S71-82

Department of Chemistry, University of California and Physical Biosciences Division, Lawrence Berkeley National Lab, Berkeley, CA 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/mrc.1823DOI Listing
July 2006

Xenon biosensor amplification via dendrimer-cage supramolecular constructs.

J Am Chem Soc 2006 May;128(19):6334-5

Department of Chemistry, University of California, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja061735sDOI Listing
May 2006

Optimization of xenon biosensors for detection of protein interactions.

Chembiochem 2006 Jan;7(1):65-73

Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cbic.200500327DOI Listing
January 2006

Beryllofluoride binding mimics phosphorylation of aspartate in response regulators.

J Bacteriol 2005 Dec;187(24):8229-30

Department of Chemistry, University of California, Berkeley, 302 Calvin Lab #1460, Berkeley, CA 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.187.24.8229-8230.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1316999PMC
December 2005

Rebuttal: conformational changes of Spo0F along the phosphotransfer pathway.

J Bacteriol 2005 Dec;187(24):8228

Department of Chemistry, University of California, Berkeley, 302 Calvin Lab #1460, Berkeley, CA 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.187.24.8228.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1317015PMC
December 2005

Spectrally resolved magnetic resonance imaging of a xenon biosensor.

Angew Chem Int Ed Engl 2005 Dec;45(1):70-3

Lawrence Berkeley National Laboratory, Materials Sciences Division and University of California Berkeley, Department of Chemistry, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://doi.wiley.com/10.1002/anie.200502693
Publisher Site
http://dx.doi.org/10.1002/anie.200502693DOI Listing
December 2005

Solid-state NMR structural studies of the fibril form of a mutant mouse prion peptide PrP89-143(P101L).

Solid State Nucl Magn Reson 2006 Feb 26;29(1-3):183-90. Epub 2005 Oct 26.

Department of Chemistry, University of California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ssnmr.2005.09.017DOI Listing
February 2006

SAS solution structures of the apo and Mg2+/BeF3(-)-bound receiver domain of DctD from Sinorhizobium meliloti.

Biochemistry 2005 Oct;44(42):13962-9

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/bi051129uDOI Listing
October 2005

The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70.

J Biol Chem 2005 Dec 6;280(50):41530-6. Epub 2005 Oct 6.

Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M509010200DOI Listing
December 2005

NMR structure of hypothetical protein MG354 from Mycoplasma genitalium.

Proteins 2005 Nov;61(3):666-8

Berkeley Structural Genomics Center, Physical Biosciences Division of the Lawrence Berkeley National Laboratory, Berkeley, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/prot.20495DOI Listing
November 2005

NMR-based biosensing with optimized delivery of polarized 129Xe to solutions.

Anal Chem 2005 Jul;77(13):4008-12

Material Sciences and Physical Biosciences Divisions, Lawrence Berkeley National Laboratory, and Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California, Berkeley, California 94720, USA. songi@ chem.ucsb.edu

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ac0500479DOI Listing
July 2005

Biophysical characterization of the interaction domains and mapping of the contact residues in the XPF-ERCC1 complex.

J Biol Chem 2005 Aug 1;280(31):28644-52. Epub 2005 Jun 1.

Department of Chemistry and National Creative Research Initiative Center, Korea Advanced Institute of Science and Technology, 373-1 Guseong-dong, Yuseong-gu, Daejon 305-701, Korea.

View Article

Download full-text PDF

Source
http://www.jbc.org/content/280/31/28644.full.pdf
Web Search
http://www.jbc.org/cgi/doi/10.1074/jbc.M501083200
Publisher Site
http://dx.doi.org/10.1074/jbc.M501083200DOI Listing
August 2005

Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR.

Protein Sci 2005 Apr 1;14(4):848-55. Epub 2005 Mar 1.

Physical Biosciences Divisions, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1110/ps.041231005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2253452PMC
April 2005

Preferential binding and structural distortion by Fe2+ at RGGG-containing DNA sequences correlates with enhanced oxidative cleavage at such sequences.

Nucleic Acids Res 2005 19;33(2):497-510. Epub 2005 Jan 19.

Department of Molecular and Cell Biology Barker Hall University of California Berkeley CA 94720-3202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gki192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC548341PMC
February 2005

YbiV from Escherichia coli K12 is a HAD phosphatase.

Proteins 2005 Mar;58(4):790-801

Department of Chemistry, University of California, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/prot.20267DOI Listing
March 2005

Development of a functionalized xenon biosensor.

J Am Chem Soc 2004 Nov;126(46):15287-94

Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja0483037DOI Listing
November 2004

Design of a conformation-sensitive xenon-binding cavity in the ribose-binding protein.

Angew Chem Int Ed Engl 2004 Nov;43(46):6320-2

Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/anie.200460629DOI Listing
November 2004

NMR structure of a cyclic polyamide-DNA complex.

J Am Chem Soc 2004 Jun;126(25):7958-66

Department of Chemistry, University of California, Berkeley, California 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja0373622DOI Listing
June 2004

Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog.

J Struct Funct Genomics 2003 ;4(4):235-43

Department of Chemistry, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1023/b:jsfg.0000016127.57320.82DOI Listing
March 2005

Protein signal assignments using specific labeling and cell-free synthesis.

J Biomol NMR 2004 Mar;28(3):235-47

Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1023/B:JNMR.0000013697.10256.74DOI Listing
March 2004

Applications of laser-polarized 129Xe to biomolecular assays.

Magn Reson Imaging 2003 Dec;21(10):1235-9

Department of Chemistry, University of California at Berkeley, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mri.2003.08.025DOI Listing
December 2003

The energetics of structural change in maltose-binding protein.

Authors:
David E Wemmer

Proc Natl Acad Sci U S A 2003 Oct 20;100(22):12529-30. Epub 2003 Oct 20.

Department of Chemistry and Physical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.2335923100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC240646PMC
October 2003

Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains.

Genes Dev 2003 Oct;17(20):2552-63

Graduate Group in Biophysics, University of California, Berkeley, California 94720,USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gad.1125603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC218149PMC
October 2003

High-resolution solution structure of the beryllofluoride-activated NtrC receiver domain.

Biochemistry 2003 Aug;42(30):9081-90

Physical Biosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/bi0273866DOI Listing
August 2003

The NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system.

J Mol Biol 2003 Aug;331(1):245-54

Department of Biochemistry, Brandeis University, Waltham, MA 02453, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0022-2836(03)00733-2DOI Listing
August 2003

Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima.

Protein Sci 2003 Jul;12(7):1464-72

Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2323937PMC
http://dx.doi.org/10.1110/ps.0302703DOI Listing
July 2003

Analysis of hairpin polyamide complexes having DNA binding sites in close proximity.

J Am Chem Soc 2002 Oct;124(43):12689-96

Department of Chemistry, MC-1460, University of California, Berkeley 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/ja020335bDOI Listing
October 2002

Detection and characterization of xenon-binding sites in proteins by 129Xe NMR spectroscopy.

J Mol Biol 2002 Sep;322(2):425-40

Department of Chemistry, MC-1460, University of California, Berkeley 94720-1460, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0022-2836(02)00739-8DOI Listing
September 2002

Sensitivity enhancement in multiple-quantum NMR experiments with CPMG detection.

J Magn Reson 2002 Jul;157(1):160-2

Department of Chemistry, University of California at Berkley, California 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1006/jmre.2002.2578DOI Listing
July 2002

Genomic effects of polyamide/DNA interactions on mRNA expression.

Chem Biol 2002 Jul;9(7):821-7

Department of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s1074-5521(02)00174-6DOI Listing
July 2002

Native state hydrogen exchange study of suppressor and pathogenic variants of transthyretin.

J Mol Biol 2002 Jul;320(4):821-32

Department of Chemistry and Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, BCC260, La Jolla, CA 92037, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0022-2836(02)00471-0DOI Listing
July 2002