Publications by authors named "David C King"

15Publications

Sonochemical characterisation of ultrasonic dental descalers.

Ultrason Sonochem 2014 Nov 8;21(6):2052-60. Epub 2014 Jan 8.

Department of Chemistry, University of Bath, Bath BA2 7AY, UK.

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http://dx.doi.org/10.1016/j.ultsonch.2013.12.029DOI Listing
November 2014

Mapping cavitation activity around dental ultrasonic tips.

Clin Oral Investig 2013 May 15;17(4):1227-34. Epub 2012 Aug 15.

School of Dentistry, University of Birmingham, St. Chad's Queensway, Birmingham, B4 6NN, UK.

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http://dx.doi.org/10.1007/s00784-012-0802-5DOI Listing
May 2013

Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.

Nucleic Acids Res 2009 Nov;37(21):7024-38

Center for Comparative Genomics and Bioinformatics, Huck Institutes of Life Sciences.

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http://dx.doi.org/10.1093/nar/gkp747DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790884PMC
November 2009

Cavitation occurrence around ultrasonic dental scalers.

Ultrason Sonochem 2009 Jun 13;16(5):692-7. Epub 2008 Nov 13.

School of Dentistry, University of Birmingham, St. Chad's Queensway, Birmingham, B4 6NN, UK.

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http://dx.doi.org/10.1016/j.ultsonch.2008.11.002DOI Listing
June 2009

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.

Genome Res 2008 Dec 25;18(12):1896-905. Epub 2008 Sep 25.

Center for Comparative Genomics and Bioinformatics of the Huck Institutes of Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.083089.108
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http://dx.doi.org/10.1101/gr.083089.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593580PMC
December 2008

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:
Ewan Birney John A Stamatoyannopoulos Anindya Dutta Roderic Guigó Thomas R Gingeras Elliott H Margulies Zhiping Weng Michael Snyder Emmanouil T Dermitzakis Robert E Thurman Michael S Kuehn Christopher M Taylor Shane Neph Christoph M Koch Saurabh Asthana Ankit Malhotra Ivan Adzhubei Jason A Greenbaum Robert M Andrews Paul Flicek Patrick J Boyle Hua Cao Nigel P Carter Gayle K Clelland Sean Davis Nathan Day Pawandeep Dhami Shane C Dillon Michael O Dorschner Heike Fiegler Paul G Giresi Jeff Goldy Michael Hawrylycz Andrew Haydock Richard Humbert Keith D James Brett E Johnson Ericka M Johnson Tristan T Frum Elizabeth R Rosenzweig Neerja Karnani Kirsten Lee Gregory C Lefebvre Patrick A Navas Fidencio Neri Stephen C J Parker Peter J Sabo Richard Sandstrom Anthony Shafer David Vetrie Molly Weaver Sarah Wilcox Man Yu Francis S Collins Job Dekker Jason D Lieb Thomas D Tullius Gregory E Crawford Shamil Sunyaev William S Noble Ian Dunham France Denoeud Alexandre Reymond Philipp Kapranov Joel Rozowsky Deyou Zheng Robert Castelo Adam Frankish Jennifer Harrow Srinka Ghosh Albin Sandelin Ivo L Hofacker Robert Baertsch Damian Keefe Sujit Dike Jill Cheng Heather A Hirsch Edward A Sekinger Julien Lagarde Josep F Abril Atif Shahab Christoph Flamm Claudia Fried Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Missal Andrea Tanzer Stefan Washietl Jan Korbel Olof Emanuelsson Jakob S Pedersen Nancy Holroyd Ruth Taylor David Swarbreck Nicholas Matthews Mark C Dickson Daryl J Thomas Matthew T Weirauch James Gilbert Jorg Drenkow Ian Bell XiaoDong Zhao K G Srinivasan Wing-Kin Sung Hong Sain Ooi Kuo Ping Chiu Sylvain Foissac Tyler Alioto Michael Brent Lior Pachter Michael L Tress Alfonso Valencia Siew Woh Choo Chiou Yu Choo Catherine Ucla Caroline Manzano Carine Wyss Evelyn Cheung Taane G Clark James B Brown Madhavan Ganesh Sandeep Patel Hari Tammana Jacqueline Chrast Charlotte N Henrichsen Chikatoshi Kai Jun Kawai Ugrappa Nagalakshmi Jiaqian Wu Zheng Lian Jin Lian Peter Newburger Xueqing Zhang Peter Bickel John S Mattick Piero Carninci Yoshihide Hayashizaki Sherman Weissman Tim Hubbard Richard M Myers Jane Rogers Peter F Stadler Todd M Lowe Chia-Lin Wei Yijun Ruan Kevin Struhl Mark Gerstein Stylianos E Antonarakis Yutao Fu Eric D Green Ulaş Karaöz Adam Siepel James Taylor Laura A Liefer Kris A Wetterstrand Peter J Good Elise A Feingold Mark S Guyer Gregory M Cooper George Asimenos Colin N Dewey Minmei Hou Sergey Nikolaev Juan I Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham Haiyan Huang Nancy R Zhang Ian Holmes James C Mullikin Abel Ureta-Vidal Benedict Paten Michael Seringhaus Deanna Church Kate Rosenbloom W James Kent Eric A Stone Serafim Batzoglou Nick Goldman Ross C Hardison David Haussler Webb Miller Arend Sidow Nathan D Trinklein Zhengdong D Zhang Leah Barrera Rhona Stuart David C King Adam Ameur Stefan Enroth Mark C Bieda Jonghwan Kim Akshay A Bhinge Nan Jiang Jun Liu Fei Yao Vinsensius B Vega Charlie W H Lee Patrick Ng Atif Shahab Annie Yang Zarmik Moqtaderi Zhou Zhu Xiaoqin Xu Sharon Squazzo Matthew J Oberley David Inman Michael A Singer Todd A Richmond Kyle J Munn Alvaro Rada-Iglesias Ola Wallerman Jan Komorowski Joanna C Fowler Phillippe Couttet Alexander W Bruce Oliver M Dovey Peter D Ellis Cordelia F Langford David A Nix Ghia Euskirchen Stephen Hartman Alexander E Urban Peter Kraus Sara Van Calcar Nate Heintzman Tae Hoon Kim Kun Wang Chunxu Qu Gary Hon Rosa Luna Christopher K Glass M Geoff Rosenfeld Shelley Force Aldred Sara J Cooper Anason Halees Jane M Lin Hennady P Shulha Xiaoling Zhang Mousheng Xu Jaafar N S Haidar Yong Yu Yijun Ruan Vishwanath R Iyer Roland D Green Claes Wadelius Peggy J Farnham Bing Ren Rachel A Harte Angie S Hinrichs Heather Trumbower Hiram Clawson Jennifer Hillman-Jackson Ann S Zweig Kayla Smith Archana Thakkapallayil Galt Barber Robert M Kuhn Donna Karolchik Lluis Armengol Christine P Bird Paul I W de Bakker Andrew D Kern Nuria Lopez-Bigas Joel D Martin Barbara E Stranger Abigail Woodroffe Eugene Davydov Antigone Dimas Eduardo Eyras Ingileif B Hallgrímsdóttir Julian Huppert Michael C Zody Gonçalo R Abecasis Xavier Estivill Gerard G Bouffard Xiaobin Guan Nancy F Hansen Jacquelyn R Idol Valerie V B Maduro Baishali Maskeri Jennifer C McDowell Morgan Park Pamela J Thomas Alice C Young Robert W Blakesley Donna M Muzny Erica Sodergren David A Wheeler Kim C Worley Huaiyang Jiang George M Weinstock Richard A Gibbs Tina Graves Robert Fulton Elaine R Mardis Richard K Wilson Michele Clamp James Cuff Sante Gnerre David B Jaffe Jean L Chang Kerstin Lindblad-Toh Eric S Lander Maxim Koriabine Mikhail Nefedov Kazutoyo Osoegawa Yuko Yoshinaga Baoli Zhu Pieter J de Jong
June 2007

Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data.

Genome Res 2007 Jun;17(6):775-86

Center for Comparative Genomics and Bioinformatics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.5592107
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http://dx.doi.org/10.1101/gr.5592107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891337PMC
June 2007

ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements.

Genome Res 2006 Dec 19;16(12):1596-604. Epub 2006 Oct 19.

Center for Comparative Genomics and Bioinformatics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.4537706
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http://dx.doi.org/10.1101/gr.4537706DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1665643PMC
December 2006

Experimental validation of predicted mammalian erythroid cis-regulatory modules.

Genome Res 2006 Dec 12;16(12):1480-92. Epub 2006 Oct 12.

Center for Comparative Genomics and Bioinformatics of the Huck Institutes of Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1101/gr.5353806DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1665632PMC
December 2006

A serological investigation of caseous lymphadenitis in four flocks of sheep.

Ir Vet J 2006 Jan 1;59(1):19-21. Epub 2006 Jan 1.

Department of Agriculture and Rural Development for Northern Ireland, Veterinary Sciences Division, 43 Beltany Road, Omagh, County Tyrone, Northern Ireland, BT78 5NF.

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http://dx.doi.org/10.1186/2046-0481-59-1-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3113893PMC
January 2006

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.

Genome Res 2005 Aug 15;15(8):1051-60. Epub 2005 Jul 15.

Center for Comparative Genomics and Bioinformatics, Huck Institutes of Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1101/gr.3642605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1182217PMC
August 2005