David Bouyssie

David Bouyssie

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David Bouyssie

David Bouyssie

Publications by authors named "David Bouyssie"

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HDX-Viewer: interactive 3D visualization of hydrogen-deuterium exchange data.

Bioinformatics 2019 Dec;35(24):5331-5333

Institut de Pharmacologie et de Biologie Structurale, Université de Toulouse, CNRS, UPS, Toulouse, France.

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http://dx.doi.org/10.1093/bioinformatics/btz550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6954641PMC
December 2019

Proceedings of the EuBIC Winter School 2019.

EuPA Open Proteom 2019 Mar 17;22-23:4-7. Epub 2019 Aug 17.

Ruhr University Bochum, Faculty of Medicine, Medizinisches Proteom-Center, Gesundheitscampus 4, D-44801, Bochum, Germany.

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http://dx.doi.org/10.1016/j.euprot.2019.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924290PMC
March 2019

Proceedings of the EuBIC developer's meeting 2018.

J Proteomics 2018 09 2;187:25-27. Epub 2018 Jun 2.

Department of Mathematics and Computer Science, University of Antwerp, Antwerp, Belgium; Department of Genome Sciences, University of Washington, Seattle, WA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2018.05.015DOI Listing
September 2018

Proceedings of the EuBIC Winter School 2017.

J Proteomics 2017 05 4;161:78-80. Epub 2017 Apr 4.

Bioinformatics Research Group, University of Applied Sciences Upper Austria, Softwarepark 11, 4232 Hagenberg, Austria. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2017.04.001DOI Listing
May 2017

Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.

Data Brief 2016 Mar 17;6:286-94. Epub 2015 Dec 17.

ProFi, Proteomic French Infrastructure, France; CNRS UMR5089 Institut de Pharmacologie et de Biologie Structurale, 205 Route de Narbonne, 31077 Toulouse, France; Université de Toulouse, 118 Route de Narbonne, 31077 Toulouse, France.

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http://dx.doi.org/10.1016/j.dib.2015.11.063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4706616PMC
March 2016

Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.

J Proteomics 2016 Jan 14;132:51-62. Epub 2015 Nov 14.

ProFi, Proteomic French Infrastructure, France; CNRS UMR5089 Institut de Pharmacologie et de Biologie Structurale, 205 route de Narbonne, 31077 Toulouse, France; Université de Toulouse, 118 route de Narbonne, 31062 Toulouse, France. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2015.11.011DOI Listing
January 2016

mzDB: a file format using multiple indexing strategies for the efficient analysis of large LC-MS/MS and SWATH-MS data sets.

Mol Cell Proteomics 2015 Mar 11;14(3):771-81. Epub 2014 Dec 11.

From the ‡CNRS; IPBS (Institut de Pharmacologie et de Biologie Structurale); 205 route de Narbonne, F-31077 Toulouse, France; §Université de Toulouse; UPS; IPBS; F-31077 Toulouse, France;

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http://www.mcponline.org/content/early/2014/12/11/mcp.O114.0
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http://www.mcponline.org/lookup/doi/10.1074/mcp.O114.039115
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http://dx.doi.org/10.1074/mcp.O114.039115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4349994PMC
March 2015

Bacterial protein-O-mannosylating enzyme is crucial for virulence of Mycobacterium tuberculosis.

Proc Natl Acad Sci U S A 2013 Apr 2;110(16):6560-5. Epub 2013 Apr 2.

Centre National de la Recherche Scientifique, Institut de Pharmacologie et de Biologie Structurale, F-31077 Toulouse, France.

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http://dx.doi.org/10.1073/pnas.1219704110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631654PMC
April 2013

Proteomic analysis of chloroplast-to-chromoplast transition in tomato reveals metabolic shifts coupled with disrupted thylakoid biogenesis machinery and elevated energy-production components.

Plant Physiol 2012 Oct 20;160(2):708-25. Epub 2012 Aug 20.

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

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http://dx.doi.org/10.1104/pp.112.203679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461550PMC
October 2012

Quantitative proteomics reveals a dynamic association of proteins to detergent-resistant membranes upon elicitor signaling in tobacco.

Mol Cell Proteomics 2009 Sep 13;8(9):2186-98. Epub 2009 Jun 13.

Institut National de Recherche Agronomique, Unité Mixte de Recherche Plante Microbe Environnement 1088/CNRS 5184/Université de Bourgogne, 17 Rue Sully, BP 86510 F-21000 Dijon, France.

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http://dx.doi.org/10.1074/mcp.M900090-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2742443PMC
September 2009

Lamellar bodies of human epidermis: proteomics characterization by high throughput mass spectrometry and possible involvement of CLIP-170 in their trafficking/secretion.

Mol Cell Proteomics 2008 Nov 12;7(11):2151-75. Epub 2008 Jul 12.

UMR5165 CNRS-University of Toulouse III, Institut Fédératif de Recherche Claude de Préval (INSERM-CNRS)-Université Paul Sabatier-Centre Hospitalier Universitaire de Toulouse) 31059 Toulouse, France.

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http://dx.doi.org/10.1074/mcp.M700334-MCP200DOI Listing
November 2008

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.

Mol Cell Proteomics 2007 Sep 28;6(9):1621-37. Epub 2007 May 28.

Laboratoire de Protéomique et Spectrométrie de Masse des Biomolécules, Equipe Labellisée Ligue 2006, Institut de Pharmacologie et de Biologie Structurale, CNRS UMR 5089, 205 route de Narbonne, 31077, Toulouse, France.

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http://dx.doi.org/10.1074/mcp.T600069-MCP200DOI Listing
September 2007