David A Relman

David A Relman

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David A Relman

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Microbial biogeography and ecology of the mouth and implications for periodontal diseases.

Periodontol 2000 2020 Feb;82(1):26-41

Division of Infectious Diseases & Geographic Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1111/prd.12268DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924627PMC
February 2020

Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation.

Nat Microbiol 2019 Dec 23. Epub 2019 Dec 23.

Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1038/s41564-019-0625-0DOI Listing
December 2019

Reduced Gut Microbiome Diversity and Metabolome Differences in Rhinoceros Species at Risk for Iron Overload Disorder.

Front Microbiol 2019 4;10:2291. Epub 2019 Oct 4.

Division of Biostatistics and Epidemiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States.

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http://dx.doi.org/10.3389/fmicb.2019.02291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6792462PMC
October 2019

Maternal IgA: Matchmaking in Early Childhood.

Authors:
David A Relman

Immunity 2019 08;51(2):211-213

Department of Medicine and Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Infectious Diseases Section, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA; Chan Zuckerberg Biohub Microbiome Initiative, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.immuni.2019.07.010DOI Listing
August 2019

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data.

Microbiome 2018 12 17;6(1):226. Epub 2018 Dec 17.

Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, 456 Research Building, 1060 William Moore Drive, Raleigh, NC, 27607, USA.

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https://microbiomejournal.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s40168-018-0605-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298009PMC
December 2018

Microbiome as a tool and a target in the effort to address antimicrobial resistance.

Proc Natl Acad Sci U S A 2018 12;115(51):12902-12910

Center for Communicable Disease Dynamics, Harvard T. H. Chan School of Public Health, Boston, MA 02115.

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http://dx.doi.org/10.1073/pnas.1717163115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6304941PMC
December 2018

Role of priority effects in the early-life assembly of the gut microbiota.

Nat Rev Gastroenterol Hepatol 2018 04 24;15(4):197-205. Epub 2018 Jan 24.

Department of Microbiology and Immunology, Stanford University School ofMedicine, 291 Campus Drive, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/nrgastro.2017.173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6813786PMC
April 2018

A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow.

Nat Commun 2018 02 14;9(1):681. Epub 2018 Feb 14.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, 94305, USA.

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http://www.nature.com/articles/s41467-018-02900-1
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http://dx.doi.org/10.1038/s41467-018-02900-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813034PMC
February 2018

Clostridium difficile, Aging, and the Gut: Can Microbiome Rejuvenation Keep Us Young and Healthy?

J Infect Dis 2018 01;217(2):174-176

Departments of Medicine, Veterans Affairs Palo Alto Health Care System, California.

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https://academic.oup.com/jid/article/217/2/174/4091002
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http://dx.doi.org/10.1093/infdis/jix417DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853914PMC
January 2018

Novel Microbial Diversity and Functional Potential in the Marine Mammal Oral Microbiome.

Curr Biol 2017 Dec 16;27(24):3752-3762.e6. Epub 2017 Nov 16.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA; Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2017.10.040DOI Listing
December 2017

Microbiota: A high-pressure situation for bacteria.

Authors:
David A Relman

Nature 2017 11 15;551(7682):571-572. Epub 2017 Nov 15.

Departments of Medicine, and of Microbiology & Immunology, Stanford University, Stanford, California 94305-5124, USA, and at the Veterans Affairs Palo Alto Health Care System, Palo Alto, California.

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http://dx.doi.org/10.1038/nature24760DOI Listing
November 2017

The Human Virome: Implications for Clinical Practice in Transplantation Medicine.

J Clin Microbiol 2017 10 19;55(10):2884-2893. Epub 2017 Jul 19.

Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1128/JCM.00489-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5625374PMC
October 2017

Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment.

PLoS Comput Biol 2017 Aug 18;13(8):e1005706. Epub 2017 Aug 18.

Statistics Department, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pcbi.1005706DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5576755PMC
August 2017

Candidatus Mycoplasma girerdii replicates, diversifies, and co-occurs with Trichomonas vaginalis in the oral cavity of a premature infant.

Sci Rep 2017 06 19;7(1):3764. Epub 2017 Jun 19.

Department of Medicine, Division of Infectious Diseases, Stanford University School of Medicine, Stanford, CA, 94305, USA.

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http://dx.doi.org/10.1038/s41598-017-03821-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5476646PMC
June 2017

A geographically-diverse collection of 418 human gut microbiome pathway genome databases.

Sci Data 2017 04 11;4:170035. Epub 2017 Apr 11.

Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada.

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http://dx.doi.org/10.1038/sdata.2017.35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5387927PMC
April 2017

The Landscape Ecology and Microbiota of the Human Nose, Mouth, and Throat.

Cell Host Microbe 2017 Apr;21(4):421-432

Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA; Infectious Diseases Section, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2017.03.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538306PMC
April 2017

Gut microbiota: How to build healthy growth-promoting gut communities.

Authors:
David A Relman

Nat Rev Gastroenterol Hepatol 2016 07 18;13(7):379-80. Epub 2016 May 18.

Departments of Medicine, and of Microbiology &Immunology, Stanford University, Stanford, California 94305-5124, USA, and at the Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304, USA.

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http://dx.doi.org/10.1038/nrgastro.2016.74DOI Listing
July 2016

A microbial perspective of human developmental biology.

Nature 2016 07;535(7610):48-55

Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St Louis, Missouri 63110, USA.

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http://dx.doi.org/10.1038/nature18845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5358965PMC
July 2016

Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time.

PLoS One 2015 13;10(11):e0142825. Epub 2015 Nov 13.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142825PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643986PMC
June 2016

Infectious Diseases Society of America and Gain-of-Function Experiments With Pathogens Having Pandemic Potential.

J Infect Dis 2016 May 27;213(9):1359-61. Epub 2015 Sep 27.

Department of Medicine, Center for International Security and Cooperation at Stanford University, California Department of Microbiology and Immunology, Center for International Security and Cooperation at Stanford University, California.

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http://dx.doi.org/10.1093/infdis/jiv474DOI Listing
May 2016

Early Transcriptional Signatures of the Immune Response to a Live Attenuated Tetravalent Dengue Vaccine Candidate in Non-human Primates.

PLoS Negl Trop Dis 2016 05 23;10(5):e0004731. Epub 2016 May 23.

Department of Microbiology and Immunology, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0004731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4877054PMC
May 2016

How likely is it that biological agents will be used deliberately to cause widespread harm? Policymakers and scientists need to take seriously the possibility that potential pandemic pathogens will be misused.

EMBO Rep 2016 Feb 18;17(2):127-30. Epub 2015 Dec 18.

Departments of Microbiology and Immunology, and Medicine, and Center for International Security and Cooperation, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.15252/embr.201541674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5290809PMC
February 2016

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea.

Nat Commun 2016 Feb 3;7:10516. Epub 2016 Feb 3.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/ncomms10516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4742810PMC
February 2016

SCIENCE GOVERNANCE. A more systematic approach to biological risk.

Science 2015 Dec;350(6267):1471-3

Center for International Security and Cooperation, Stanford University, Stanford, CA, USA. Department of Microbiology and Immunology, Stanford University, Stanford, CA, USA. Department of Medicine, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1126/science.aad8849DOI Listing
December 2015

Reply to Keelan and Payne: Microbiota-related pathways for preterm birth.

Proc Natl Acad Sci U S A 2015 Nov 29;112(47):E6415. Epub 2015 Oct 29.

Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305; Medical Service, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304; Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA 94305

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http://dx.doi.org/10.1073/pnas.1517939112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664308PMC
November 2015

Temporal and spatial variation of the human microbiota during pregnancy.

Proc Natl Acad Sci U S A 2015 Sep 17;112(35):11060-5. Epub 2015 Aug 17.

March of Dimes Prematurity Research Center, Stanford University School of Medicine, Stanford, CA 94305; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305; Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1502875112
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http://dx.doi.org/10.1073/pnas.1502875112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4568272PMC
September 2015

The Human Microbiome and the Future Practice of Medicine.

Authors:
David A Relman

JAMA 2015 Sep;314(11):1127-8

Departments of Medicine and of Microbiology and Immunology, Stanford University, Stanford, California2Veterans Affairs Palo Alto Health Care System, Palo Alto, California.

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http://dx.doi.org/10.1001/jama.2015.10700DOI Listing
September 2015

Biological engineering, risk, and uncertainty.

Authors:
David A Relman

Hastings Cent Rep 2014 Nov-Dec;44(6 Spec no.):S36-7

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http://dx.doi.org/10.1002/hast.397DOI Listing
June 2015

Actionable sequence data on infectious diseases in the clinical workplace.

Authors:
David A Relman

Clin Chem 2015 Jan 14;61(1):38-40. Epub 2014 Nov 14.

Department of Microbiology and Immunology, Department of Medicine, Stanford University, Stanford, CA; Veterans Affairs Palo Alto Health Care System, Palo Alto, CA.

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http://dx.doi.org/10.1373/clinchem.2014.229211DOI Listing
January 2015

Gain-of-function experiments: time for a real debate.

Nat Rev Microbiol 2015 01 8;13(1):58-64. Epub 2014 Dec 8.

Departments of Medicine, and of Microbiology and Immunology, and the Center for International Security and Cooperation at Stanford University, California 94305, USA; and at the Veterans Affairs Palo Alto Health Care System, Palo Alto, California 94304, USA.

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http://dx.doi.org/10.1038/nrmicro3405DOI Listing
January 2015

Editorial overview: insights into molecular mechanisms of microbiota.

J Mol Biol 2014 Nov 11;426(23):3827-9. Epub 2014 Sep 11.

Departments of Medicine and of Microbiology and Immunology, Stanford University, Stanford, CA 94305-5124, USA; Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1016/j.jmb.2014.08.021DOI Listing
November 2014

Antibiotics and the gut microbiota.

J Clin Invest 2014 Oct 1;124(10):4212-8. Epub 2014 Oct 1.

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http://dx.doi.org/10.1172/JCI72333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191029PMC
October 2014

Population health: immaturity in the gut microbial community.

Nature 2014 Jun 4;510(7505):344-5. Epub 2014 Jun 4.

Departments of Medicine and of Microbiology & Immunology, Stanford University, Stanford, California 94305-5124, USA, and at the Veterans Affairs Palo Alto Health Care System, Palo Alto, California.

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http://dx.doi.org/10.1038/nature13347DOI Listing
June 2014

The importance of influenza vaccination.

JAMA Intern Med 2014 Apr;174(4):644-5

Infectious Disease Society of America, Arlington, Virginia.

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http://dx.doi.org/10.1001/jamainternmed.2013.11174DOI Listing
April 2014

"Inconvenient truths" in the pursuit of scientific knowledge and public health.

Authors:
David A Relman

J Infect Dis 2014 Jan 7;209(2):170-2. Epub 2013 Oct 7.

Department of Medicine.

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http://dx.doi.org/10.1093/infdis/jit529DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873791PMC
January 2014

Comparisons of distance methods for combining covariates and abundances in microbiome studies.

Pac Symp Biocomput 2012 :213-24

Statistics Department, Stanford University, Stanford, CA 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532668PMC
December 2013

Nasal microenvironments and interspecific interactions influence nasal microbiota complexity and S. aureus carriage.

Cell Host Microbe 2013 Dec;14(6):631-40

Department of Microbiology & Immunology, Stanford University, Stanford, CA 94305, USA; Department of Medicine, Stanford University, Stanford, CA 94305, USA; Veterans Affairs Palo Alto Health Care System, Palo Alto, CA 94304, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2013.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3902146PMC
December 2013

Microbiome assembly across multiple body sites in low-birthweight infants.

mBio 2013 Oct 29;4(6):e00782-13. Epub 2013 Oct 29.

Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, California, USA.

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http://dx.doi.org/10.1128/mBio.00782-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3809564PMC
October 2013

Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.

PLoS One 2013 22;8(1):e53838. Epub 2013 Jan 22.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053838PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551965PMC
July 2013

Temporal dynamics of the transcriptional response to dengue virus infection in Nicaraguan children.

PLoS Negl Trop Dis 2012 20;6(12):e1966. Epub 2012 Dec 20.

Department of Microbiology and Immunology, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0001966DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3527342PMC
May 2013

The increasingly compelling moral responsibilities of life scientists.

Authors:
David A Relman

Hastings Cent Rep 2013 Mar-Apr;43(2):34-5

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http://dx.doi.org/10.1002/hast.156DOI Listing
May 2013

Microbiology. Undernutrition--looking within for answers.

Authors:
David A Relman

Science 2013 Feb 30;339(6119):530-2. Epub 2013 Jan 30.

Departments of Medicine and of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1126/science.1234723DOI Listing
February 2013

Restoration of the gut microbial habitat as a disease therapy.

Authors:
David A Relman

Nat Biotechnol 2013 Jan;31(1):35-7

Department of Medicine, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1038/nbt.2475DOI Listing
January 2013

Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses.

Environ Microbiol 2012 Sep 15;14(9):2564-76. Epub 2012 May 15.

Departments of Pathology and Medicine, University of California, San Diego, 9500 Gilman Drive, MC 0612, La Jolla, CA 92093-0612, USA.

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http://dx.doi.org/10.1111/j.1462-2920.2012.02775.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424356PMC
September 2012

The human microbiome: ecosystem resilience and health.

Authors:
David A Relman

Nutr Rev 2012 Aug;70 Suppl 1:S2-9

Department of Medicine, Stanford University School of Medicine, Stanford, California, USA.

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http://nutritionreviews.oxfordjournals.org/content/nutrition
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http://nutritionreviews.oxfordjournals.org/cgi/doi/10.1111/j
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http://dx.doi.org/10.1111/j.1753-4887.2012.00489.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422777PMC
August 2012

Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).

Genome Res 2012 Jun 20;22(6):1107-19. Epub 2012 Mar 20.

Department of Microbiology and Immunology, The Howard Hughes Medical Institute.

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http://dx.doi.org/10.1101/gr.131482.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371716PMC
June 2012

Creating a mammalian-transmissible A/H5N1 influenza virus: social contracts, prudence, and alternative perspectives.

J Infect Dis 2012 Jun 27;205(11):1636-8. Epub 2012 Mar 27.

Center for Infectious Disease Research and Policy, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1093/infdis/jis259DOI Listing
June 2012

The application of ecological theory toward an understanding of the human microbiome.

Science 2012 Jun 6;336(6086):1255-62. Epub 2012 Jun 6.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1224203
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http://dx.doi.org/10.1126/science.1224203DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208626PMC
June 2012

Microbiota-targeted therapies: an ecological perspective.

Sci Transl Med 2012 Jun;4(137):137rv5

Department of Molecular Genetics, The Forsyth Institute, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1126/scitranslmed.3004183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5725196PMC
June 2012

Microbiology: Learning about who we are.

Authors:
David A Relman

Nature 2012 Jun 13;486(7402):194-5. Epub 2012 Jun 13.

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http://dx.doi.org/10.1038/486194aDOI Listing
June 2012

Modulation of the host interferon response and ISGylation pathway by B. pertussis filamentous hemagglutinin.

PLoS One 2011 30;6(11):e27535. Epub 2011 Nov 30.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0027535PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227562PMC
April 2012

Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression.

J Bacteriol 2011 Sep 8;193(18):4798-812. Epub 2011 Jul 8.

Department of Microbiology, University of Minnesota Medical School, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1128/JB.05136-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165686PMC
September 2011

Microbial genomics and infectious diseases.

Authors:
David A Relman

N Engl J Med 2011 Jul;365(4):347-57

Department of Medicine, Stanford University, Stanford, California, USA.

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http://dx.doi.org/10.1056/NEJMra1003071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3412127PMC
July 2011

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Authors:
Pelin Yilmaz Renzo Kottmann Dawn Field Rob Knight James R Cole Linda Amaral-Zettler Jack A Gilbert Ilene Karsch-Mizrachi Anjanette Johnston Guy Cochrane Robert Vaughan Christopher Hunter Joonhong Park Norman Morrison Philippe Rocca-Serra Peter Sterk Manimozhiyan Arumugam Mark Bailey Laura Baumgartner Bruce W Birren Martin J Blaser Vivien Bonazzi Tim Booth Peer Bork Frederic D Bushman Pier Luigi Buttigieg Patrick S G Chain Emily Charlson Elizabeth K Costello Heather Huot-Creasy Peter Dawyndt Todd DeSantis Noah Fierer Jed A Fuhrman Rachel E Gallery Dirk Gevers Richard A Gibbs Inigo San Gil Antonio Gonzalez Jeffrey I Gordon Robert Guralnick Wolfgang Hankeln Sarah Highlander Philip Hugenholtz Janet Jansson Andrew L Kau Scott T Kelley Jerry Kennedy Dan Knights Omry Koren Justin Kuczynski Nikos Kyrpides Robert Larsen Christian L Lauber Teresa Legg Ruth E Ley Catherine A Lozupone Wolfgang Ludwig Donna Lyons Eamonn Maguire Barbara A Methé Folker Meyer Brian Muegge Sara Nakielny Karen E Nelson Diana Nemergut Josh D Neufeld Lindsay K Newbold Anna E Oliver Norman R Pace Giriprakash Palanisamy Jörg Peplies Joseph Petrosino Lita Proctor Elmar Pruesse Christian Quast Jeroen Raes Sujeevan Ratnasingham Jacques Ravel David A Relman Susanna Assunta-Sansone Patrick D Schloss Lynn Schriml Rohini Sinha Michelle I Smith Erica Sodergren Aymé Spo Jesse Stombaugh James M Tiedje Doyle V Ward George M Weinstock Doug Wendel Owen White Andrew Whiteley Andreas Wilke Jennifer R Wortman Tanya Yatsunenko Frank Oliver Glöckner

Nat Biotechnol 2011 May;29(5):415-20

Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.

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https://darchive.mblwhoilibrary.org/bitstream/handle/1912/46
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http://www.nature.com/doifinder/10.1038/nbt.1823
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http://dx.doi.org/10.1038/nbt.1823DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367316PMC
May 2011

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.

Proc Natl Acad Sci U S A 2011 Mar 14;108 Suppl 1:4547-53. Epub 2010 Jun 14.

Department of Biology, San Diego State University, San Diego, CA 92182, USA.

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http://dx.doi.org/10.1073/pnas.1000089107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3063595PMC
March 2011

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation.

Proc Natl Acad Sci U S A 2011 Mar 16;108 Suppl 1:4554-61. Epub 2010 Sep 16.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3063582PMC
March 2011

Strain-resolved community genomic analysis of gut microbial colonization in a premature infant.

Proc Natl Acad Sci U S A 2011 Jan 29;108(3):1128-33. Epub 2010 Dec 29.

Department of Surgery, University of Chicago Pritzker School of Medicine, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1073/pnas.1010992108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3024690PMC
January 2011

Stunned silence: gene expression programs in human cells infected with monkeypox or vaccinia virus.

PLoS One 2011 Jan 18;6(1):e15615. Epub 2011 Jan 18.

Departments of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022624PMC
January 2011

SmashCell: a software framework for the analysis of single-cell amplified genome sequences.

Bioinformatics 2010 Dec 21;26(23):2979-80. Epub 2010 Oct 21.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq564DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2982155PMC
December 2010

Bacterial diversity in the oral cavity of 10 healthy individuals.

ISME J 2010 Aug 25;4(8):962-74. Epub 2010 Mar 25.

Department of Microbiology & Immunology, Stanford University School of Medicine, Stanford, CA, USA.

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http://dx.doi.org/10.1038/ismej.2010.30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2941673PMC
August 2010

Genetic technologies. Synthetic "life," ethics, national security, and public discourse.

Science 2010 Jul;329(5987):38-9

Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1126/science.1193749DOI Listing
July 2010

The biological century: coming to terms with risk in the life sciences.

Authors:
David A Relman

Nat Immunol 2010 Apr;11(4):275-8

Department of Medicine, Stanford University, and the Veterans Affairs Palo Alto Health Care System, Palo Alto, California, USA.

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April 2010

Microbial threat lists: obstacles in the quest for biosecurity?

Nat Rev Microbiol 2010 02 11;8(2):149-54. Epub 2010 Jan 11.

Department of Microbiology and Immunology, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, New York 10461, USA.

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February 2010

Gene transcript abundance profiles distinguish Kawasaki disease from adenovirus infection.

J Infect Dis 2009 Aug;200(4):657-66

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, , CA 94305, USA.

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http://dx.doi.org/10.1086/603538DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878183PMC
August 2009