David A Ray

David A Ray

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David A Ray

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The 2019 FASEB Science Research Conference on The Mobile DNA Conference: 25 Years of Discussion and Research, June 23-28, Palm Springs, California, USA.

FASEB J 2019 Nov;33(11):11625-11628

Department of Structural and Cellular Biology, Tulane University School of Medicine, New Orleans, Louisiana, USA.

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http://dx.doi.org/10.1096/fj.201902390DOI Listing
November 2019

True Homoplasy of Retrotransposon Insertions in Primates.

Syst Biol 2019 05;68(3):482-493

Institute of Experimental Pathology (ZMBE), University of Münster, Von-Esmarch-Str. 56, D-48149 Münster, Germany.

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http://dx.doi.org/10.1093/sysbio/syy076DOI Listing
May 2019

Mammalian transposable elements and their impacts on genome evolution.

Chromosome Res 2018 03 1;26(1-2):25-43. Epub 2018 Feb 1.

Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA.

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http://dx.doi.org/10.1007/s10577-017-9570-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5857283PMC
March 2018

Evolution and Diversity of Transposable Elements in Vertebrate Genomes.

Genome Biol Evol 2017 01;9(1):161-177

Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA.

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https://academic.oup.com/gbe/article/2965566/Evolution
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http://dx.doi.org/10.1093/gbe/evw264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381603PMC
January 2017

Genome sequence of Phormia regina Meigen (Diptera: Calliphoridae): implications for medical, veterinary and forensic research.

BMC Genomics 2016 10 28;17(1):842. Epub 2016 Oct 28.

Department of Biology, Indiana University Purdue University Indianapolis, 723 W. Michigan Street, Indianapolis, IN, 46202, USA.

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http://dx.doi.org/10.1186/s12864-016-3187-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5084420PMC
October 2016

Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome.

Mob DNA 2016 22;7:12. Epub 2016 Jul 22.

Department of Biological Sciences, Texas Tech University, Box 43131, Lubbock, TX 79409-3131 USA.

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http://dx.doi.org/10.1186/s13100-016-0071-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971623PMC
August 2016

Transposable Element Targeting by piRNAs in Laurasiatherians with Distinct Transposable Element Histories.

Genome Biol Evol 2016 05 9;8(5):1327-37. Epub 2016 May 9.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University

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http://dx.doi.org/10.1093/gbe/evw078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898795PMC
May 2016

Contrasting Patterns of Evolutionary Diversification in the Olfactory Repertoires of Reptile and Bird Genomes.

Genome Biol Evol 2016 Feb 9;8(3):470-80. Epub 2016 Feb 9.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University Institute for Genomics, Biocomputing and Biochemistry, Mississippi State University

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http://dx.doi.org/10.1093/gbe/evw013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4825420PMC
February 2016

Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies.

Genome Biol Evol 2016 Jan 21;8(2):403-10. Epub 2016 Jan 21.

Department of Biological Sciences, Texas Tech University

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http://dx.doi.org/10.1093/gbe/evw009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779615PMC
January 2016

Transposable elements and small RNAs: Genomic fuel for species diversity.

Mob Genet Elements 2015 Sep-Oct;5(5):63-66. Epub 2015 Jul 24.

Department of Biological Sciences; Texas Tech University ; Lubbock, TX USA.

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http://dx.doi.org/10.1080/2159256X.2015.1066919DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4743710PMC
July 2015

Differential SINE evolution in vesper and non-vesper bats.

Mob DNA 2015 15;6:10. Epub 2015 May 15.

Department of Natural Resources Management and the Museum, Texas Tech University, Lubbock, TX 79409 USA.

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http://dx.doi.org/10.1186/s13100-015-0038-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4436864PMC
May 2015

Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.

Genome Biol Evol 2015 May 25;7(6):1664-75. Epub 2015 May 25.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University Department of Biological Sciences, Texas Tech University

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http://gbe.oxfordjournals.org/content/early/2015/05/25/gbe.e
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http://gbe.oxfordjournals.org/cgi/doi/10.1093/gbe/evv099
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http://dx.doi.org/10.1093/gbe/evv099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494050PMC
May 2015

A 454 sequencing approach to dipteran mitochondrial genome research.

Genomics 2015 Jan 11;105(1):53-60. Epub 2014 Nov 11.

The Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA; Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2014.10.014DOI Listing
January 2015

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes.

Retrovirology 2014 Dec 12;11:71. Epub 2014 Dec 12.

Faculty of Veterinary Science, University of Sydney, Sydney, NSW, 2006, Australia.

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http://dx.doi.org/10.1186/s12977-014-0071-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4299795PMC
December 2014

Early mesozoic coexistence of amniotes and hepadnaviridae.

PLoS Genet 2014 Dec 11;10(12):e1004559. Epub 2014 Dec 11.

Department of Evolutionary Biology (EBC), Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1371/journal.pgen.1004559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263362PMC
December 2014

Comparative genomics reveals insights into avian genome evolution and adaptation.

Science 2014 Dec 11;346(6215):1311-20. Epub 2014 Dec 11.

China National GeneBank, Beijing Genomics Institute (BGI)-Shenzhen, Shenzhen, 518083, China. Macau University of Science and Technology, Avenida Wai long, Taipa, Macau 999078, China. Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200 Copenhagen, Denmark. Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia. Department of Medicine, University of Hong Kong, Hong Kong.

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http://jarvislab.net/wp-content/uploads/2014/12/Science-2014
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http://www.sciencemag.org/cgi/doi/10.1126/science.1251385
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http://dx.doi.org/10.1126/science.1251385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390078PMC
December 2014

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Science 2014 Dec 11;346(6215):1254449. Epub 2014 Dec 11.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA. Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA. Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA.

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http://jarvislab.net/wp-content/uploads/2012/02/Green-et-al-
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http://www.sciencemag.org/cgi/doi/10.1126/science.1254449
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http://dx.doi.org/10.1126/science.1254449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4386873PMC
December 2014

Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats.

Mol Biol Evol 2014 Jun 1;31(6):1536-45. Epub 2014 Apr 1.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State UniversityInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University

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http://dx.doi.org/10.1093/molbev/msu112DOI Listing
June 2014

Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera.

Mob DNA 2013 Oct 2;4(1):21. Epub 2013 Oct 2.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1186/1759-8753-4-21DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016481PMC
October 2013

Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

Genome Biol Evol 2012 4;4(4):575-85. Epub 2012 Apr 4.

Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, MS, USA.

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http://dx.doi.org/10.1093/gbe/evs038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342881PMC
July 2012

Transcriptome-based differentiation of closely-related Miscanthus lines.

PLoS One 2012 10;7(1):e29850. Epub 2012 Jan 10.

Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029850PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3254643PMC
May 2012

A non-LTR retroelement extinction in Spermophilus tridecemlineatus.

Gene 2012 May 21;500(1):47-53. Epub 2012 Mar 21.

Department of Biochemistry, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1016/j.gene.2012.03.051DOI Listing
May 2012

Phylogenetic structure illuminates the mechanistic role of environmental heterogeneity in community organization.

J Anim Ecol 2012 Mar 5;81(2):455-62. Epub 2011 Sep 5.

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1111/j.1365-2656.2011.01900.xDOI Listing
March 2012

Complete mitochondrial genome sequences of three bats species and whole genome mitochondrial analyses reveal patterns of codon bias and lend support to a basal split in Chiroptera.

Gene 2012 Jan 24;492(1):121-9. Epub 2011 Oct 24.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S03781119110061
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http://dx.doi.org/10.1016/j.gene.2011.10.038DOI Listing
January 2012

Expedited batch processing and analysis of transposon insertions.

BMC Res Notes 2011 Nov 4;4:482. Epub 2011 Nov 4.

Department of Biology, West Virginia University, Morgantown, WV 26506, USA.

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http://dx.doi.org/10.1186/1756-0500-4-482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222620PMC
November 2011

Complete mitochondrial genome sequences of three Crocodylus species and their comparison within the Order Crocodylia.

Gene 2011 Jun 17;478(1-2):35-41. Epub 2011 Feb 17.

National DNA Analysis Centre, Central Forensic Science Laboratory, 30, Gorachand Road, Park Circus, Kolkata 700 014, West Bengal, India.

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http://dx.doi.org/10.1016/j.gene.2011.01.012DOI Listing
June 2011

Reading TE leaves: new approaches to the identification of transposable element insertions.

Genome Res 2011 Jun;21(6):813-20

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, Mississippi 39762, USA.

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https://biosci-batzerlab.biology.lsu.edu/Publications/Ray_an
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http://genome.cshlp.org/cgi/doi/10.1101/gr.110528.110
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http://dx.doi.org/10.1101/gr.110528.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3106314PMC
June 2011

The evolution and diversity of DNA transposons in the genome of the Lizard Anolis carolinensis.

Genome Biol Evol 2011 2;3:1-14. Epub 2010 Dec 2.

Department of Biology, Queens College, the City University of New York, NY, USA.

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http://dx.doi.org/10.1093/gbe/evq080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3014272PMC
February 2011

Molecular phylogenetic analyses of genus Crocodylus (Eusuchia, Crocodylia, Crocodylidae) and the taxonomic position of Crocodylus porosus.

Mol Phylogenet Evol 2010 Oct 19;57(1):393-402. Epub 2010 Jun 19.

National DNA Analysis Centre, Central Forensic Science Laboratory, Park Circus, Kolkata, West Bengal, India.

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http://dx.doi.org/10.1016/j.ympev.2010.06.011DOI Listing
October 2010

Laboratory methods for the analysis of primate mobile elements.

Methods Mol Biol 2010 ;628:153-79

Department of Biology, West Virginia University, Morgantown, WV, USA.

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http://dx.doi.org/10.1007/978-1-60327-367-1_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2880178PMC
May 2010

Multiple chicken repeat 1 lineages in the genomes of oestroid flies.

Gene 2009 Dec 28;448(1):40-5. Epub 2009 Aug 28.

Department of Biology, West Virginia University, Morgantown, WV 26506, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S037811190900455
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http://dx.doi.org/10.1016/j.gene.2009.08.010DOI Listing
December 2009

Reading between the LINEs to see into the past.

Trends Genet 2009 Nov;25(11):475-9

Department of Biochemistry and Molecular Biology, Box 9650, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1016/j.tig.2009.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2783679PMC
November 2009

A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization.

BMC Genomics 2009 Jul 14;10 Suppl 2:S9. Epub 2009 Jul 14.

Mississippi Genome Exploration Laboratory, Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA.

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http://dx.doi.org/10.1186/1471-2164-10-S2-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966330PMC
July 2009

Plasma vitellogenin in Morelet's crocodiles from contaminated habitats in northern Belize.

Environ Pollut 2008 May 10;153(1):101-9. Epub 2007 Sep 10.

The Institute of Environmental and Human Health and Department of Environmental Toxicology, Texas Tech University, Lubbock, TX 79409-1163, USA.

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http://dx.doi.org/10.1016/j.envpol.2007.07.018DOI Listing
May 2008

Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus.

Genome Res 2008 May 13;18(5):717-28. Epub 2008 Mar 13.

Department of Biology, West Virginia University, Morgantown, West Virginia 26506, USA.

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http://dx.doi.org/10.1101/gr.071886.107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2336803PMC
May 2008

Genome analysis of the platypus reveals unique signatures of evolution.

Authors:
Wesley C Warren LaDeana W Hillier Jennifer A Marshall Graves Ewan Birney Chris P Ponting Frank Grützner Katherine Belov Webb Miller Laura Clarke Asif T Chinwalla Shiaw-Pyng Yang Andreas Heger Devin P Locke Pat Miethke Paul D Waters Frédéric Veyrunes Lucinda Fulton Bob Fulton Tina Graves John Wallis Xose S Puente Carlos López-Otín Gonzalo R Ordóñez Evan E Eichler Lin Chen Ze Cheng Janine E Deakin Amber Alsop Katherine Thompson Patrick Kirby Anthony T Papenfuss Matthew J Wakefield Tsviya Olender Doron Lancet Gavin A Huttley Arian F A Smit Andrew Pask Peter Temple-Smith Mark A Batzer Jerilyn A Walker Miriam K Konkel Robert S Harris Camilla M Whittington Emily S W Wong Neil J Gemmell Emmanuel Buschiazzo Iris M Vargas Jentzsch Angelika Merkel Juergen Schmitz Anja Zemann Gennady Churakov Jan Ole Kriegs Juergen Brosius Elizabeth P Murchison Ravi Sachidanandam Carly Smith Gregory J Hannon Enkhjargal Tsend-Ayush Daniel McMillan Rosalind Attenborough Willem Rens Malcolm Ferguson-Smith Christophe M Lefèvre Julie A Sharp Kevin R Nicholas David A Ray Michael Kube Richard Reinhardt Thomas H Pringle James Taylor Russell C Jones Brett Nixon Jean-Louis Dacheux Hitoshi Niwa Yoko Sekita Xiaoqiu Huang Alexander Stark Pouya Kheradpour Manolis Kellis Paul Flicek Yuan Chen Caleb Webber Ross Hardison Joanne Nelson Kym Hallsworth-Pepin Kim Delehaunty Chris Markovic Pat Minx Yucheng Feng Colin Kremitzki Makedonka Mitreva Jarret Glasscock Todd Wylie Patricia Wohldmann Prathapan Thiru Michael N Nhan Craig S Pohl Scott M Smith Shunfeng Hou Mikhail Nefedov Pieter J de Jong Marilyn B Renfree Elaine R Mardis Richard K Wilson

Nature 2008 May;453(7192):175-83

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature06936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803040PMC
May 2008

Mobile DNA elements in primate and human evolution.

Am J Phys Anthropol 2007 ;Suppl 45:2-19

Department of Human Genetics, University of Utah Health Sciences Center, Salt Lake City, UT 84112, USA.

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http://dx.doi.org/10.1002/ajpa.20722DOI Listing
January 2008

SINEs, evolution and genome structure in the opossum.

Gene 2007 Jul 19;396(1):46-58. Epub 2007 Mar 19.

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.

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http://dx.doi.org/10.1016/j.gene.2007.02.028DOI Listing
July 2007

A SINE-based dichotomous key for primate identification.

Gene 2007 Apr 30;390(1-2):39-51. Epub 2006 Aug 30.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, United States.

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http://dx.doi.org/10.1016/j.gene.2006.08.015DOI Listing
April 2007

Bats with hATs: evidence for recent DNA transposon activity in genus Myotis.

Mol Biol Evol 2007 Mar 5;24(3):632-9. Epub 2006 Dec 5.

Department of Biology, West Virginia University, USA.

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http://dx.doi.org/10.1093/molbev/msl192DOI Listing
March 2007

Mobile element-based forensic genomics.

Mutat Res 2007 Mar 8;616(1-2):24-33. Epub 2006 Dec 8.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.mrfmmm.2006.11.019DOI Listing
March 2007

SINEs of progress: Mobile element applications to molecular ecology.

Authors:
David A Ray

Mol Ecol 2007 Jan;16(1):19-33

Department of Biology, West Virginia University, 53 Campus Dr, Morgantown, WV 26506, USA.

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http://dx.doi.org/10.1111/j.1365-294X.2006.03104.xDOI Listing
January 2007

A mobile element-based evolutionary history of guenons (tribe Cercopithecini).

BMC Biol 2007 Jan 31;5. Epub 2007 Jan 31.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1186/1741-7007-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797000PMC
January 2007

SINEs of a nearly perfect character.

Syst Biol 2006 Dec;55(6):928-35

Department of Biology, West Virginia University, PO Box 6057, Morgantown, West Virginia 26506, USA.

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http://dx.doi.org/10.1080/10635150600865419DOI Listing
December 2006

Development of an enzyme-linked immunosorbent assay for vitellogenin of Morelet's crocodile (Crocodylus moreletii).

Comp Biochem Physiol C Toxicol Pharmacol 2006 May 31;143(1):50-8. Epub 2006 Jan 31.

Department of Biological Sciences, Bayer School of Natural and Environmental Sciences, Duquesne University, Pittsburgh, PA 15282, USA.

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http://dx.doi.org/10.1016/j.cbpc.2005.12.001DOI Listing
May 2006

Are crocodiles really monophyletic?--Evidence for subdivisions from sequence and morphological data.

Mol Phylogenet Evol 2006 Apr 21;39(1):16-32. Epub 2006 Feb 21.

Department of Biological Sciences, Texas Tech University, P.O. Box 43131, Lubbock, TX 79409-313, USA.

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http://dx.doi.org/10.1016/j.ympev.2006.01.012DOI Listing
April 2006

Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms.

Gene 2006 Jan 10;365:11-20. Epub 2006 Jan 10.

Department of Cancer Genetics, Roswell Park Cancer Institute, Elm and Carlton Streets, Buffalo, NY 14263, USA.

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http://dx.doi.org/10.1016/j.gene.2005.09.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1847407PMC
January 2006

A mobile element based phylogeny of Old World monkeys.

Mol Phylogenet Evol 2005 Dec 3;37(3):872-80. Epub 2005 Jun 3.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ympev.2005.04.015DOI Listing
December 2005

Chompy: an infestation of MITE-like repetitive elements in the crocodilian genome.

Gene 2005 Dec 23;362:1-10. Epub 2005 Sep 23.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multiscale Systems, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.gene.2005.07.010DOI Listing
December 2005

Inference of human geographic origins using Alu insertion polymorphisms.

Forensic Sci Int 2005 Oct;153(2-3):117-24

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.forsciint.2004.10.017DOI Listing
October 2005

Tracking Alu evolution in New World primates.

BMC Evol Biol 2005 Oct 6;5:51. Epub 2005 Oct 6.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multiscale Systems, Louisiana State University, Baton Rouge, LA 70803, USA.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-5-51DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1266357PMC
October 2005

Alu insertion loci and platyrrhine primate phylogeny.

Mol Phylogenet Evol 2005 Apr 18;35(1):117-26. Epub 2005 Jan 18.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale systems, Louisiana State University, 202 Life Sciences Bldg., Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ympev.2004.10.023DOI Listing
April 2005

Straightening out the LINEs: LINE-1 orthologous loci.

Genomics 2005 Feb;85(2):201-7

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1016/j.ygeno.2004.10.016DOI Listing
February 2005

Analysis of the human Alu Ye lineage.

BMC Evol Biol 2005 Feb 22;5:18. Epub 2005 Feb 22.

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Multi-scale Systems, Louisiana State University, 202 Life Sciences Building, Baton Rouge, Louisiana 70803, USA.

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http://dx.doi.org/10.1186/1471-2148-5-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC554112PMC
February 2005

Analysis of the human Alu Ya-lineage.

J Mol Biol 2004 Sep;342(1):109-18

Department of Biological Sciences, Biological Computation and Visualization Center, Center for Bio-Modular Microsystems, Louisiana State University, 202 Life Sciences Building, Baton Rouge 70803, USA.

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http://dx.doi.org/10.1016/j.jmb.2004.07.016DOI Listing
September 2004

Alu elements and hominid phylogenetics.

Proc Natl Acad Sci U S A 2003 Oct 15;100(22):12787-91. Epub 2003 Oct 15.

Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, 202 Life Sciences Building, Baton Rouge, LA 70803, USA.

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http://dx.doi.org/10.1073/pnas.2133766100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC240696PMC
October 2003

Repetitive sequences in the crocodilian mitochondrial control region: poly-A sequences and heteroplasmic tandem repeats.

Mol Biol Evol 2003 Jun 25;20(6):1006-13. Epub 2003 Apr 25.

Department of Biological Sciences, Texas Tech University, Lubbock, TX, USA.

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http://dx.doi.org/10.1093/molbev/msg117DOI Listing
June 2003