Publications by authors named "David A Garfield"

23Publications

Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis.

Dev Cell 2020 Dec 9;55(5):648-664.e9. Epub 2020 Nov 9.

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany. Electronic address:

View Article and Find Full Text PDF
December 2020

The Role of Chromatin Accessibility in cis-Regulatory Evolution.

Genome Biol Evol 2019 07;11(7):1813-1828

Department of Computer Science, University of Illinois at Urbana-Champaign.

View Article and Find Full Text PDF
July 2019

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Curr Biol 2016 Jan 10;26(1):38-51. Epub 2015 Dec 10.

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany. Electronic address:

View Article and Find Full Text PDF
January 2016

Ultrasensitive proteome analysis using paramagnetic bead technology.

Mol Syst Biol 2014 Oct 30;10:757. Epub 2014 Oct 30.

European Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany

View Article and Find Full Text PDF
October 2014

The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

PLoS Biol 2013 Oct 29;11(10):e1001696. Epub 2013 Oct 29.

Department of Biology, Duke University, Durham, North Carolina, United States of America.

View Article and Find Full Text PDF
October 2013

Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing.

Genome Res 2013 Mar 6;23(3):568-79. Epub 2012 Dec 6.

Genome Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.

View Article and Find Full Text PDF
March 2013

Genetics of gene expression responses to temperature stress in a sea urchin gene network.

Mol Ecol 2012 Sep 1;21(18):4547-62. Epub 2012 Aug 1.

Department of Biology, Duke University, Durham, NC 27708, USA.

View Article and Find Full Text PDF
September 2012

Genome-wide polymorphisms show unexpected targets of natural selection.

Proc Biol Sci 2012 Apr 12;279(1732):1412-20. Epub 2011 Oct 12.

Department of Biology, Hopkins Marine Station, Stanford University, Oceanview Boulevard, Pacific Grove, CA 93950, USA.

View Article and Find Full Text PDF
April 2012

Levels of Emotional Awareness: a model for conceptualizing and measuring emotion-centered structural change.

Int J Psychoanal 2011 Apr 5;92(2):289-310. Epub 2011 Feb 5.

Universitätsmedizin Mainz, Klinik für Psychosomatische Medizin und Psychotherapie, Untere Zahlbacher Str. 8, 55131 Mainz, Germany.

View Article and Find Full Text PDF
April 2011

Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin.

Genome Biol Evol 2010 8;2:800-14. Epub 2010 Oct 8.

Department of Biology, Hopkins Marine Station, Stanford University, USA.

View Article and Find Full Text PDF
February 2011

Comparative embryology without a microscope: using genomic approaches to understand the evolution of development.

J Biol 2009 21;8(7):65. Epub 2009 Jul 21.

Biology Department and Institute for Genome Science & Policy, Duke University, Durham, NC 27708, USA.

View Article and Find Full Text PDF
November 2009

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

View Article and Find Full Text PDF
November 2007

Models, metaphors and psychopathology: commentary on Javanbakht's "bugs and bowls".

J Am Acad Psychoanal Dyn Psychiatry 2005 ;33(2):377-84

Department of Psychiatry and Behavioral Sciences, Chicago Medical School, Rosalind Franklin University of Medicin and Science, Chicago, USA.

View Article and Find Full Text PDF
December 2005

The vertical split in neurosis and psychosis: motor acts and the infrastructure of agency.

Psychoanal Rev 2005 Apr;92(2):249-70

Department of Psychiatry and Behavioral Sciences, The Chicago Medical School at Rosalind Franklin University of Medicine and Science, North Chicago, IL 60064, USA.

View Article and Find Full Text PDF
April 2005

A comparison of personality characteristics of patients with posttraumatic stress disorders and substance dependence: preliminary findings.

J Nerv Ment Dis 2003 Sep;191(9):616-8

Department of Psychiatry and Behavioral Sciences, Finch University of Health Sciences, North Chicago, Illinois, 60064, USA.

View Article and Find Full Text PDF
September 2003

Psychometric Properties of ABPN-Style Oral Examinations Administered Jointly by Two Psychiatry Residency Programs.

Acad Psychiatry 2001 Dec;25(4):214-222

Drs. Sierles, Daghestani, Weiner, Fichtner, and Garfield are at the Department of Psychiatry and Behavioral Sciences, Finch University of Health Sciences/The Chicago Medical School, Chicago, IL. Dr. de Vito is at the Department of Psychiatry, Stritch School of Medicine, Loyola University, Chicago, IL. Address correspondence to Dr. Sierles, 3333 Green Bay Road, North Chicago, IL 60064. E-mail:

View Article and Find Full Text PDF
December 2001