Darren P Martin

Darren P Martin

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Evolution and ecology of plant viruses.

Nat Rev Microbiol 2019 Oct 16;17(10):632-644. Epub 2019 Jul 16.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ, USA.

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http://dx.doi.org/10.1038/s41579-019-0232-3DOI Listing
October 2019

Partner HIV Serostatus Impacts Viral Load, Genital HIV Shedding, and Immune Activation in HIV-Infected Individuals.

J Acquir Immune Defic Syndr 2019 Sep;82(1):51-60

Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.

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http://dx.doi.org/10.1097/QAI.0000000000002089DOI Listing
September 2019

Evolutionary dynamics of ten novel Gamma-PVs: insights from phylogenetic incongruence, recombination and phylodynamic analyses.

BMC Genomics 2019 May 14;20(1):368. Epub 2019 May 14.

Division of Medical Virology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.

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http://dx.doi.org/10.1186/s12864-019-5735-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6518707PMC
May 2019

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand.

Arch Virol 2019 Jan 15;164(1):237-242. Epub 2018 Sep 15.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life Sciences, Arizona State University, Tempe, AZ, 85287-5001, USA.

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http://dx.doi.org/10.1007/s00705-018-4031-3DOI Listing
January 2019

From Spatial Metagenomics to Molecular Characterization of Plant Viruses: A Geminivirus Case Study.

Adv Virus Res 2018 7;101:55-83. Epub 2018 May 7.

CIRAD, UMR BGPI, Montpellier, France; BGPI, Univ. Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France. Electronic address:

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http://dx.doi.org/10.1016/bs.aivir.2018.02.003DOI Listing
November 2018

New Isolates of Sweet potato feathery mottle virus and Sweet potato virus C: Biological and Molecular Properties, and Recombination Analysis Based on Complete Genomes.

Plant Dis 2018 Oct 23;102(10):1899-1914. Epub 2018 Aug 23.

Department of Primary Industries and Rural Development, South Perth, WA 6151, Australia; UWA Institute of Agriculture, Faculty of Science, UWA.

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https://apsjournals.apsnet.org/doi/10.1094/PDIS-12-17-1972-R
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http://dx.doi.org/10.1094/PDIS-12-17-1972-REDOI Listing
October 2018

Alphasatellitidae: a new family with two subfamilies for the classification of geminivirus- and nanovirus-associated alphasatellites.

Arch Virol 2018 Sep 9;163(9):2587-2600. Epub 2018 May 9.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine and School of Life sciences, Arizona State University, Tempe, AZ, 85287, USA.

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http://dx.doi.org/10.1007/s00705-018-3854-2DOI Listing
September 2018

Molecular characterization of faba bean necrotic yellows viruses in Tunisia.

Arch Virol 2018 Mar 17;163(3):687-694. Epub 2017 Nov 17.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Tempe, AZ, 85287-5001, USA.

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http://dx.doi.org/10.1007/s00705-017-3651-3DOI Listing
March 2018

Nanovirus-alphasatellite complex identified in Vicia cracca in the Rhône delta region of France.

Arch Virol 2018 Mar 20;163(3):695-700. Epub 2017 Nov 20.

BGPI, CIRAD, INRA, Montpellier SupAgro, Univ Montpellier, Montpellier, France.

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http://dx.doi.org/10.1007/s00705-017-3634-4DOI Listing
March 2018

Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland.

Viruses 2018 03 2;10(3). Epub 2018 Mar 2.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Tempe, AZ 85287, USA.

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http://dx.doi.org/10.3390/v10030107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5869500PMC
March 2018

Detecting and Analyzing Genetic Recombination Using RDP4.

Methods Mol Biol 2017 ;1525:433-460

Institute of Infectious Diseases and Molecular Medicine, Computational Biology Group, University of Cape Town, Cape Town, 7549, South Africa.

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http://dx.doi.org/10.1007/978-1-4939-6622-6_17DOI Listing
January 2018

Unravelling the complicated evolutionary and dissemination history of HIV-1M subtype A lineages.

Virus Evol 2018 Jan 19;4(1):vey003. Epub 2018 Feb 19.

Division of Computational Biology, Department of Integrative Biomedical Sciences and Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa.

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http://dx.doi.org/10.1093/ve/vey003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819727PMC
January 2018

Patterns of genomic site inheritance in HIV-1M inter-subtype recombinants delineate the most likely genomic sites of subtype-specific adaptation.

Virus Evol 2018 Jan 11;4(1):vey015. Epub 2018 Jun 11.

Division of Computational Biology, Department of Integrative Biomedical Sciences and Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa.

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http://dx.doi.org/10.1093/ve/vey015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007327PMC
January 2018

Genetic diversity and phylogenetic analysis of the ORF5 gene of PRRSV from central China.

Res Vet Sci 2017 Dec 11;115:226-234. Epub 2017 May 11.

College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, China. Electronic address:

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http://dx.doi.org/10.1016/j.rvsc.2017.05.013DOI Listing
December 2017

Tomato leaf curl New Delhi virus: a widespread bipartite begomovirus in the territory of monopartite begomoviruses.

Mol Plant Pathol 2017 09 17;18(7):901-911. Epub 2016 Oct 17.

National Institute for Biotechnology and Genetic Engineering, Jhang Road, Faisalabad. PO Box 577, Pakistan.

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http://dx.doi.org/10.1111/mpp.12481DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638225PMC
September 2017

Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland.

Arch Virol 2017 Jul 10;162(7):2041-2045. Epub 2017 Mar 10.

CIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398, Montpellier Cedex-5, France.

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http://dx.doi.org/10.1007/s00705-017-3298-0DOI Listing
July 2017

The Influence of HIV on the Evolution of Mycobacterium tuberculosis.

Mol Biol Evol 2017 07;34(7):1654-1668

Wellcome Centre for Infectious Disease Research in Africa, Institute of Infectious Disease and Molecular Medicine, and Department of Medicine, University of Cape Town, Cape Town, South Africa.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msx107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5455964PMC
July 2017

Capulavirus and Grablovirus: two new genera in the family Geminiviridae.

Arch Virol 2017 Jun 17;162(6):1819-1831. Epub 2017 Feb 17.

Computational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, 7925, South Africa.

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http://dx.doi.org/10.1007/s00705-017-3268-6DOI Listing
June 2017

Novel mastreviruses identified in Australian wild rice.

Virus Res 2017 06 4;238:193-197. Epub 2017 Jul 4.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA; School of Biological Sciences, University of Canterbury, Christchurch 8140, New Zealand; Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Observatory, Cape Town, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2017.07.003DOI Listing
June 2017

Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands.

Virus Res 2017 06 4;238:171-178. Epub 2017 Jul 4.

The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life sciences, Arizona State University, Tempe, AZ 85287-5001, USA; School of Biological Sciences, University of Canterbury, Christchurch, 8140, New Zealand; Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Observatory, Cape Town, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2017.07.001DOI Listing
June 2017

Identification of a Nanovirus-Alphasatellite Complex in Sophora alopecuroides.

Virus Res 2017 05 8;235:24-32. Epub 2017 Apr 8.

School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand; Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Rondebosch 7701, Cape Town, South Africa; The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2017.03.023DOI Listing
May 2017

Comparative analysis of common regions found in babuviruses and alphasatellite molecules.

Arch Virol 2017 Mar 22;162(3):849-855. Epub 2016 Nov 22.

School of Biological Sciences, University of Canterbury, Christchurch, 8140, New Zealand.

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http://dx.doi.org/10.1007/s00705-016-3168-1DOI Listing
March 2017

The role of Kenya in the trans-African spread of maize streak virus strain A.

Virus Res 2017 03 9;232:69-76. Epub 2017 Feb 9.

South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2017.02.005DOI Listing
March 2017

ICTV Virus Taxonomy Profile: Geminiviridae.

J Gen Virol 2017 02;98(2):131-133

8​The Biodesign Center for Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85287, USA.

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http://dx.doi.org/10.1099/jgv.0.000738DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5802298PMC
February 2017

Ongoing geographical spread of Tomato yellow leaf curl virus.

Virology 2016 11 15;498:257-264. Epub 2016 Sep 15.

South African National Bioinformatics Institute, University of the Western Cape, Bellville 7535, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2016.08.033DOI Listing
November 2016

Potent Sensitisation of Cancer Cells to Anticancer Drugs by a Quadruple Mutant of the Human Deoxycytidine Kinase.

PLoS One 2015 20;10(10):e0140741. Epub 2015 Oct 20.

Architecture et Réactivité de l'ARN, CNRS, IBMC, Université de Strasbourg, 15 rue René Descartes, 67084 Strasbourg, Cedex, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0140741PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4618062PMC
June 2016

Identification and in silico characterisation of defective molecules associated with isolates of banana bunchy top virus.

Arch Virol 2016 Apr 5;161(4):1019-26. Epub 2016 Jan 5.

School of Biological Sciences and Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand.

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http://dx.doi.org/10.1007/s00705-015-2736-0DOI Listing
April 2016

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem.

Infect Genet Evol 2016 Apr 10;39:304-316. Epub 2016 Feb 10.

School of Biological Sciences, University of Canterbury, Christchurch 8140, New Zealand; Biomolecular Interaction Centre, University of Canterbury, Christchurch 8140, New Zealand; Structural Biology Research Unit, Division of Medical Biochemistry, Department of Clinical Laboratory Sciences, University of Cape Town, Rondebosch 7700, South Africa; Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2016.02.011DOI Listing
April 2016

Prevalence of Sugarcane yellow leaf virus in Sugarcane-Producing Regions in Kenya Revealed by Reverse-Transcription Loop-Mediated Isothermal Amplification Method.

Plant Dis 2016 Feb 25;100(2):260-268. Epub 2015 Nov 25.

CIRAD-INRA-SupAgro, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.

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http://dx.doi.org/10.1094/PDIS-05-15-0602-REDOI Listing
February 2016

High Degree of HIV-1 Group M (HIV-1M) Genetic Diversity within Circulating Recombinant Forms: Insight into the Early Events of HIV-1M Evolution.

J Virol 2015 Dec 9;90(5):2221-9. Epub 2015 Dec 9.

Division of Computational Biology, Department of Integrated Biology Sciences and Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa

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http://dx.doi.org/10.1128/JVI.02302-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810712PMC
December 2015

Inducible resistance to maize streak virus.

PLoS One 2014 28;9(8):e105932. Epub 2014 Aug 28.

Department of Molecular and Cell Biology, University of Cape Town, Rondebosch, Cape Town, South Africa; Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Observatory, Cape Town, South Africa.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0105932PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148390PMC
November 2015

Complete Genome Sequences of Four African Horse Sickness Virus Strains from a Commercial Tetravalent Live Attenuated Vaccine.

Genome Announc 2015 Nov 25;3(6). Epub 2015 Nov 25.

Equine Viral Diseases Laboratory, Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, California, USA Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa.

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http://dx.doi.org/10.1128/genomeA.01375-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661309PMC
November 2015

Patterns of recombination in HIV-1M are influenced by selection disfavouring the survival of recombinants with disrupted genomic RNA and protein structures.

PLoS One 2014 17;9(6):e100400. Epub 2014 Jun 17.

Institute of Infectious Diseases and Molecular Medicine, Computational Biology Group, University of Cape Town, Cape Town, South Africa.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100400PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061080PMC
October 2015

Phylogenetics of HIV-1 subtype G env: Greater complexity and older origins than previously reported.

Infect Genet Evol 2015 Oct 17;35:9-18. Epub 2015 Jul 17.

International Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town, South Africa; Division of Immunology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2015.07.017DOI Listing
October 2015

Near full-length HIV type 1M genomic sequences from Cameroon : Evidence of early diverging under-sampled lineages in the country.

Evol Med Public Health 2015 Sep 9;2015(1):254-65. Epub 2015 Sep 9.

Division of Computational Biology, Department of Integrated Biology Sciences and Institute of Infectious Disease and Molecular Medicine, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa; and.

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http://dx.doi.org/10.1093/emph/eov022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4600344PMC
September 2015

The global distribution of reveals little evidence for frequent recent, human-mediated long distance dispersal events.

Virus Evol 2015 10;1(1):vev009. Epub 2015 Sep 10.

School of Biological Sciences and Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand; Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa; Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA.

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http://dx.doi.org/10.1093/ve/vev009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014477PMC
September 2015

Complete Genome Sequences of the Three African Horse Sickness Virus Strains from a Commercial Trivalent Live Attenuated Vaccine.

Genome Announc 2015 Aug 20;3(4). Epub 2015 Aug 20.

Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Onderstepoort, South Africa Department of Pathology, Equine Viral Disease Laboratory, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, California, USA.

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http://dx.doi.org/10.1128/genomeA.00814-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4543496PMC
August 2015

Plant Virus Metagenomics: Advances in Virus Discovery.

Phytopathology 2015 Jun 9;105(6):716-27. Epub 2015 Jun 9.

First author: Department of Plant Pathology and Environmental Microbiology, Center for Infectious Disease Dynamics, Pennsylvania State University, University Park, PA 16802; second author: Computational Biology Group, Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, 7925 South Africa; and third author: CIRAD, UMR BGPI, Campus International de Montferrier-Baillarguet, 34398 Montpellier Cedex-5, France.

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http://dx.doi.org/10.1094/PHYTO-12-14-0356-RVWDOI Listing
June 2015

Identification of novel Bromus- and Trifolium-associated circular DNA viruses.

Arch Virol 2015 May 21;160(5):1303-11. Epub 2015 Feb 21.

School of Biological Sciences and Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand.

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http://dx.doi.org/10.1007/s00705-015-2358-6DOI Listing
May 2015

RDP4: Detection and analysis of recombination patterns in virus genomes.

Virus Evol 2015 26;1(1):vev003. Epub 2015 May 26.

Department of Integrative Biomedical Sciences, Computational Biology Group, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road Observatory 7549, Cape Town, South Africa.

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http://dx.doi.org/10.1093/ve/vev003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5014473PMC
May 2015

Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond.

Infect Genet Evol 2015 Apr 9;31:73-86. Epub 2015 Jan 9.

School of Biological Sciences, University of Canterbury, Christchurch 8140, New Zealand; Electron Microscope Unit, Division of Medical Biochemistry, Department of Clinical Laboratory Sciences, University of Cape Town, Rondebosch, 7701 Cape Town, South Africa; Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA; Biomolecular Interaction Centre, University of Canterbury, Christchurch 8140, New Zealand. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2015.01.001DOI Listing
April 2015

Identification of an Australian-like dicot-infecting mastrevirus in Pakistan.

Arch Virol 2015 Mar 24;160(3):825-30. Epub 2014 Dec 24.

School of Biological Sciences and Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand.

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http://link.springer.com/content/pdf/10.1007/s00705-014-2299
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http://link.springer.com/10.1007/s00705-014-2299-5
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http://dx.doi.org/10.1007/s00705-014-2299-5DOI Listing
March 2015

Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: high rates of intra-species recombination - a driving force in the emergence of new strains.

Infect Genet Evol 2015 Jan 29;29:203-15. Epub 2014 Nov 29.

School of Biological Sciences and Biomolecular Interaction Centre, University of Canterbury, Christchurch 8140, New Zealand; Electron Microscope Unit, Division of Medical Biochemistry, Department of Clinical Laboratory Sciences, University of Cape Town, Observatory, 7700, South Africa; Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2014.11.024DOI Listing
January 2015

A high degree of African streak virus diversity within Nigerian maize fields includes a new mastrevirus from Axonopus compressus.

Arch Virol 2014 Oct 6;159(10):2765-70. Epub 2014 May 6.

Department of Crop Production, Soil and Environmental Management, Bowen University, P.M.B. 284, Iwo, Osun State, Nigeria.

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http://link.springer.com/content/pdf/10.1007/s00705-014-2090
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http://link.springer.com/10.1007/s00705-014-2090-7
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http://dx.doi.org/10.1007/s00705-014-2090-7DOI Listing
October 2014

The influence of secondary structure, selection and recombination on rubella virus nucleotide substitution rate estimates.

Virol J 2014 Sep 16;11:166. Epub 2014 Sep 16.

South African National Bioinformatics Institute, SA Medical Research Council Unit for Bioinformatics Capacity Development, University of the Western Cape, Cape Town, South Africa.

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http://dx.doi.org/10.1186/1743-422X-11-166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4175276PMC
September 2014

Phylogenetic reconstruction methods: an overview.

Methods Mol Biol 2014 ;1115:257-77

Pôle de Protection des Plantes, CIRAD, UMR PVBMT, Université de la Réunion, Saint-Pierre, France.

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https://www.cs.rice.edu/~nakhleh/Papers/TPS05.pdf
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http://link.springer.com/10.1007/978-1-62703-767-9_13
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http://dx.doi.org/10.1007/978-1-62703-767-9_13DOI Listing
August 2014

Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus.

Arch Virol 2014 Aug 22;159(8):2193-203. Epub 2014 Mar 22.

School of Biological Sciences and Biomolecular Interaction, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand,

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http://dx.doi.org/10.1007/s00705-014-2050-2DOI Listing
August 2014

Revisiting the classification of curtoviruses based on genome-wide pairwise identity.

Arch Virol 2014 Jul 25;159(7):1873-82. Epub 2014 Jan 25.

School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand,

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http://dx.doi.org/10.1007/s00705-014-1982-xDOI Listing
July 2014

Extensive recombination-induced disruption of genetic interactions is highly deleterious but can be partially reversed by small numbers of secondary recombination events.

J Virol 2014 Jul 30;88(14):7843-51. Epub 2014 Apr 30.

Molecular and Cell Biology Department, University of Cape Town, Cape Town, South Africa Institute of Infectious Diseases and Molecular Medicine, University of Cape Town, Cape Town, South Africa.

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http://jvi.asm.org/lookup/doi/10.1128/JVI.00709-14
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http://dx.doi.org/10.1128/JVI.00709-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4097777PMC
July 2014

Pigeon circoviruses display patterns of recombination, genomic secondary structure and selection similar to those of beak and feather disease viruses.

J Gen Virol 2014 Jun 17;95(Pt 6):1338-51. Epub 2014 Mar 17.

School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand Electron Microscope Unit, Division of Medical Biochemistry, Department of Clinical Laboratory Sciences, University of Cape Town, Observatory 7700, South Africa Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611, USA Biomolecular Interaction Centre, University of Canterbury, Christchurch 8140, New Zealand

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http://dx.doi.org/10.1099/vir.0.063917-0DOI Listing
June 2014

Research capacity. Enabling the genomic revolution in Africa.

Authors:
Charles Rotimi Akin Abayomi Alash'le Abimiku Victoria May Adabayeri Clement Adebamowo Ezekiel Adebiyi Adebowale D Ademola Adebowale Adeyemo Dwomoa Adu Dissou Affolabi Godfred Agongo Samuel Ajayi Sally Akarolo-Anthony Rufus Akinyemi Albert Akpalu Marianne Alberts Orlando Alonso Betancourt Ahmed Mansour Alzohairy Gobena Ameni Olukemi Amodu Gabriel Anabwani Kristian Andersen Fatiu Arogundade Oyedunni Arulogun Danny Asogun Rasheed Bakare Naby Balde Mary Lynn Baniecki Christine Beiswanger Alia Benkahla Lara Bethke Micheal Boehnke Vincent Boima James Brandful Andrew I Brooks Frank C Brosius Chester Brown Bruno Bucheton David T Burke Barrington G Burnett Stacy Carrington-Lawrence Nadia Carstens John Chisi Alan Christoffels Richard Cooper Heather Cordell Nigel Crowther Talishiea Croxton Jantina de Vries Leslie Derr Peter Donkor Seydou Doumbia Audrey Duncanson Ivy Ekem Ahmed El Sayed Mark E Engel John C K Enyaru Dean Everett Faisal M Fadlelmola Eyitayo Fakunle Kenneth H Fischbeck Anne Fischer Onikepe Folarin Junaid Gamieldien Robert F Garry Simani Gaseitsiwe Rasheed Gbadegesin Anita Ghansah Maria Giovanni Parham Goesbeck F Xavier Gomez-Olive Donald S Grant Ravnit Grewal Mark Guyer Neil A Hanchard Christian T Happi Scott Hazelhurst Branwen J Hennig Christiane Hertz- Fowler Winston Hide Friedhelm Hilderbrandt Christopher Hugo-Hamman Muntaser E Ibrahim Regina James Yasmina Jaufeerally-Fakim Carolyn Jenkins Ute Jentsch Pan-Pan Jiang Moses Joloba Victor Jongeneel Fourie Joubert Mukthar Kader Kathleen Kahn Pontiano Kaleebu Saidi H Kapiga Samar Kamal Kassim Ishmael Kasvosve Jonathan Kayondo Bernard Keavney Adeodata Kekitiinwa Sheik Humarr Khan Paul Kimmel Mary-Claire King Robert Kleta Mathurin Koffi Jeffrey Kopp Matthias Kretzler Judit Kumuthini Samuel Kyobe Catherine Kyobutungi Daniel T Lackland Karen A Lacourciere Guida Landouré Rita Lawlor Thomas Lehner Maia Lesosky Naomi Levitt Katherine Littler Zane Lombard Jeanne F Loring Sylvester Lyantagaye Annette Macleod Ebony B Madden Chengetai R Mahomva Julie Makani Manmak Mamven Marape Marape Graeme Mardon Patricia Marshall Darren P Martin Daniel Masiga Robin Mason Michael Mate-Kole Enock Matovu Mary Mayige Bongani M Mayosi Jean Claude Mbanya Sheryl A McCurdy Mark I McCarthy Helen McIlleron S O Mc'Ligeyo Corrine Merle Ana Olga Mocumbi Charles Mondo John V Moran Ayesha Motala Marva Moxey-Mims Wata Sununguko Mpoloka Chisomo L Msefula Thuli Mthiyane Nicola Mulder Gebregziab her Mulugeta Dieuodonne Mumba John Musuku Mo Nagdee Oyekanmi Nash Daouda Ndiaye Anh Quynh Nguyen Mark Nicol Oathokwa Nkomazana Shane Norris Betty Nsangi Alexander Nyarko Moffat Nyirenda Eileen Obe Reginald Obiakor Abraham Oduro Solomon F Ofori-Acquah Okechukwu Ogah Stephen Ogendo Kwaku Ohene-Frempong Akinlolu Ojo Timothy Olanrewaju John Oli Charlotte Osafo Odile Ouwe Missi Oukem-Boyer Bruce Ovbiagele Andrew Owen Mayowa Ojo Owolabi Lukman Owolabi Ellis Owusu-Dabo Guillaume Pare Rulan Parekh Hugh G Patterton Margaret B Penno Jane Peterson Rembert Pieper Jacob Plange-Rhule Martin Pollak Julia Puzak Rajkumar S Ramesar Michele Ramsay Rebekah Rasooly Shiksha Reddy Pardis C Sabeti Kwamena Sagoe Tunde Salako Oumar Samassékou Manjinder S Sandhu Osman Sankoh Fred Stephen Sarfo Marie Sarr Gasnat Shaboodien Issa Sidibe Gustave Simo Martin Simuunza Liam Smeeth Eugene Sobngwi Himla Soodyall Hermann Sorgho Oumou Sow Bah Sudha Srinivasan Dan J Stein Ezra S Susser Carmen Swanepoel Godfred Tangwa Andrew Tareila Ozlem Tastan Bishop Bamidele Tayo Nicki Tiffin Halidou Tinto Ekaete Tobin Stephen Meir Tollman Mahamadou Traoré Marsha J Treadwell Jennifer Troyer Masego Tsimako-Johnstone Vincent Tukei Ifeoma Ulasi Nzovu Ulenga Beverley van Rooyen Ablo Prudence Wachinou Salina P Waddy Alisha Wade Misaki Wayengera James Whitworth Louise Wideroff Cheryl A Winkler Sarah Winnicki Ambroise Wonkam Mengistu Yewondwos Tadase sen Nathan Yozwiak Heather Zar

Science 2014 Jun;344(6190):1346-8

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Towards inferring the global movement of beak and feather disease virus.

Virology 2014 Feb 20;450-451:24-33. Epub 2013 Dec 20.

Electron Microscope Unit, Division of Medical Biochemistry, Department of Clinical Laboratory Sciences, University of Cape Town, Rondebosch, Cape Town 7701, South Africa; School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand; Biomolecular Interaction Centre, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand.

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Res Vet Sci 2013 Dec 6;95(3):908-12. Epub 2013 Aug 6.

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School of Biological Sciences, University of Canterbury, Christchurch 8140, New Zealand.

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http://dx.doi.org/10.1016/j.virusres.2013.08.008DOI Listing
November 2013

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August 2013

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PLoS One 2012 26;7(11):e50070. Epub 2012 Nov 26.

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School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand.

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Avihepadnavirus diversity in parrots is comparable to that found amongst all other avian species.

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Genetic variation and phylogenetic analysis of porcine circovirus type 2 infections in central China.

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College of Animal Science and Veterinary Medicine, Henan Agricultural University, No. 95 Wenhua Road, Zhengzhou, China.

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June 2012

Molecular characterisation of a novel cassava associated circular ssDNA virus.

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School of Biological Sciences, University of Canterbury, Ilam, Christchurch 8140, New Zealand.

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June 2012

Further characterization of tomato-infecting begomoviruses in Brazil.

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Department Fitopatologia, Universidade de Brasília, Brasília, DF, 70910-900, Brazil.

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http://dx.doi.org/10.1007/s00705-011-1213-7DOI Listing
April 2012