Daria A Gaykalova

Daria A Gaykalova

UNVERIFIED PROFILE

Are you Daria A Gaykalova?   Register this Author

Register author
Daria A Gaykalova

Daria A Gaykalova

Publications by authors named "Daria A Gaykalova"

Are you Daria A Gaykalova?   Register this Author

37Publications

592Reads

-Profile Views

HEY1 is expressed independent of NOTCH1 and is associated with poor prognosis in head and neck squamous cell carcinoma.

Oral Oncol 2018 Jul 1;82:168-175. Epub 2018 Jun 1.

Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, 601 N Caroline St., Baltimore, MD 21287, United States; Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, 615 N Wolfe St., Baltimore, MD 21205, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.oraloncology.2018.05.017DOI Listing
July 2018

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.

PLoS Comput Biol 2018 Jun 19;14(4):e1006935. Epub 2019 Apr 19.

Department of Oncology, Division of Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1006935DOI Listing
June 2018

Molecular mechanisms of human papillomavirus-related carcinogenesis in head and neck cancer.

Microbes Infect 2017 Sep - Oct;19(9-10):464-475. Epub 2017 Jun 12.

Department of Otolaryngology - Head and Neck Surgery, Johns Hopkins School of Medicine, Baltimore, MD, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.micinf.2017.06.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5603399PMC
April 2018

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination.

Cancer Inform 2016 10;15:15-21. Epub 2016 Feb 10.

Department of Mathematics and Statistics, The College of New Jersey, Ewing, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4137/CIN.S32468DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750896PMC
February 2016

Expression microarray analysis reveals alternative splicing of LAMA3 and DST genes in head and neck squamous cell carcinoma.

PLoS One 2014 27;9(3):e91263. Epub 2014 Mar 27.

Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America; Milton J. Dance Head and Neck Center, Greater Baltimore Medical Center, Baltimore, Maryland, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0091263PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967989PMC
December 2015

Structural analysis of nucleosomal barrier to transcription.

Proc Natl Acad Sci U S A 2015 Oct 12;112(43):E5787-95. Epub 2015 Oct 12.

Department of Pharmacology, Rutgers University School of Medicine, Piscataway, NJ 08854; Cancer Epigenetics Program, Fox Chase Cancer Center, Philadelphia, PA 19111; Biology Faculty, Lomonosov Moscow State University, Moscow, Russia 119991

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1508371112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629332PMC
October 2015

Correcting transcription factor gene sets for copy number and promoter methylation variations.

Drug Dev Res 2014 Sep;75(6):343-7

Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/ddr.21220DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160810PMC
September 2014

Activation of the NOTCH pathway in head and neck cancer.

Cancer Res 2014 Feb 18;74(4):1091-104. Epub 2013 Dec 18.

Authors' Affiliations: Departments of Otolaryngology-Head and Neck Surgery, Oncology and Health Science Informatics, Surgery, Oncology, and Pathology, Johns Hopkins Medical Institutions; Milton J. Dance Head and Neck Center, Greater Baltimore Medical Center, Baltimore, Maryland; and Asuragen Inc., Austin, Texas.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1158/0008-5472.CAN-13-1259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944644PMC
February 2014

Experimental analysis of the mechanism of chromatin remodeling by RNA polymerase II.

Methods Enzymol 2012 ;512:293-314

Department of Pharmacology, UMDNJ-Robert Wood Johnson Medical School, Piscataway, New Jersey, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/B978-0-12-391940-3.00013-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926419PMC
December 2012

A polar barrier to transcription can be circumvented by remodeler-induced nucleosome translocation.

Nucleic Acids Res 2011 May 17;39(9):3520-8. Epub 2011 Jan 17.

Department of Pharmacology, UMDNJ-Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkq1273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089449PMC
May 2011

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

Nat Struct Mol Biol 2009 Dec 22;16(12):1272-8. Epub 2009 Nov 22.

Department of Pharmacology, University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, Piscataway, New Jersey, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nsmb.1689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2919570PMC
December 2009

Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

Nucleic Acids Res 2009 Aug 9;37(14):4707-22. Epub 2009 Jun 9.

Department of Physics & Astronomy and BioMaPS Institute for Quantitative Biology, Rutgers University, 136 Frelinghuysen Road, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2724288PMC
August 2009

Preparation and analysis of uniquely positioned mononucleosomes.

Methods Mol Biol 2009 ;523:109-23

Department of Pharmacology, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, Piscataway, NJ, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-59745-190-1_8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4517586PMC
May 2009

Transcription through chromatin by RNA polymerase II: histone displacement and exchange.

Mutat Res 2007 May 21;618(1-2):116-29. Epub 2007 Jan 21.

Department of Pharmacology, UMDNJ, Robert Wood Johnson Medical School, Piscataway, NJ 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mrfmmm.2006.05.040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1924643PMC
May 2007

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II.

Mol Cell 2006 Nov;24(3):469-79

Department of Pharmacology, University of Medicine and Dentistry of New Jersey, Robert Wood Johnson Medical School, 675 Hoes Lane, Room 405, Piscataway, New Jersey 08854, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.molcel.2006.09.009DOI Listing
November 2006