Publications Authored by Danielle M Karyadi

Whole genome sequencing of canids reveals genomic regions under selection and variants influencing morphology.

Authors:

Jocelyn Plassais Jaemin Kim Brian W Davis Danielle M Karyadi Andrew N Hogan Alex C Harris Brennan Decker Heidi G Parker Elaine A Ostrander

Nat Commun 2019 04 2;10(1):1489. Epub 2019 Apr 2.

Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA.

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http://dx.doi.org/10.1038/s41467-019-09373-w	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6445083	PMC

April 2019

Whole exome sequencing in 75 high-risk families with validation and replication in independent case-control studies identifies TANGO2, OR5H14, and CHAD as new prostate cancer susceptibility genes.

Authors:

Danielle M Karyadi Milan S Geybels Eric Karlins Brennan Decker Laura McIntosh Amy Hutchinson Suzanne Kolb Shannon K McDonnell Belynda Hicks Sumit Middha Liesel M FitzGerald Melissa S DeRycke Meredith Yeager Daniel J Schaid Stephen J Chanock Stephen N Thibodeau Sonja I Berndt Janet L Stanford Elaine A Ostrander

Oncotarget 2017 Jan;8(1):1495-1507

National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.18632/oncotarget.13646	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341753	PMC

January 2017

Biallelic BRCA2 Mutations Shape the Somatic Mutational Landscape of Aggressive Prostate Tumors.

Authors:

Brennan Decker Danielle M Karyadi Brian W Davis Eric Karlins Lori S Tillmans Janet L Stanford Stephen N Thibodeau Elaine A Ostrander

Am J Hum Genet 2016 05 14;98(5):818-829. Epub 2016 Apr 14.

Cancer Genetics Branch, National Human Genome Research Institute, NIH, Bethesda, MD 20892, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.03.003	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4863563	PMC

May 2016

Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor.

Authors:

Brennan Decker Brian W Davis Maud Rimbault Adrienne H Long Eric Karlins Vidhya Jagannathan Rebecca Reiman Heidi G Parker Cord Drögemüller Jason J Corneveaux Erica S Chapman Jeffery M Trent Tosso Leeb Matthew J Huentelman Robert K Wayne Danielle M Karyadi Elaine A Ostrander

Genome Res 2015 Nov 31;25(11):1646-55. Epub 2015 Jul 31.

Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA;

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http://dx.doi.org/10.1101/gr.190314.115	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617961	PMC

November 2015

Confirmation of genetic variants associated with lethal prostate cancer in a cohort of men from hereditary prostate cancer families.

Authors:

Danielle M Karyadi Shanshan Zhao Qianchuan He Laura McIntosh Jonathan L Wright Elaine A Ostrander Ziding Feng Janet L Stanford

Int J Cancer 2015 May 13;136(9):2166-71. Epub 2014 Oct 13.

Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD.

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http://dx.doi.org/10.1002/ijc.29241	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4331209	PMC

May 2015

Germline missense variants in the BTNL2 gene are associated with prostate cancer susceptibility.

Authors:

Liesel M Fitzgerald Akash Kumar Evan A Boyle Yuzheng Zhang Laura M McIntosh Suzanne Kolb Marni Stott-Miller Tiffany Smith Danielle M Karyadi Elaine A Ostrander Li Hsu Jay Shendure Janet L Stanford

Cancer Epidemiol Biomarkers Prev 2013 Sep 5;22(9):1520-8. Epub 2013 Jul 5.

Division of Public Health Sciences, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-13-0345	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769499	PMC

September 2013

HOXB13 mutations in a population-based, case-control study of prostate cancer.

Authors:

Marni Stott-Miller Danielle M Karyadi Tiffany Smith Erika M Kwon Suzanne Kolb Janet L Stanford Elaine A Ostrander

Prostate 2013 May 5;73(6):634-41. Epub 2012 Nov 5.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

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http://doi.wiley.com/10.1002/pros.22604	Publisher Site
http://dx.doi.org/10.1002/pros.22604	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3612366	PMC

May 2013

Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.

Authors:

Rosalind A Eeles Ali Amin Al Olama Sara Benlloch Edward J Saunders Daniel A Leongamornlert Malgorzata Tymrakiewicz Maya Ghoussaini Craig Luccarini Joe Dennis Sarah Jugurnauth-Little Tokhir Dadaev David E Neal Freddie C Hamdy Jenny L Donovan Ken Muir Graham G Giles Gianluca Severi Fredrik Wiklund Henrik Gronberg Christopher A Haiman Fredrick Schumacher Brian E Henderson Loic Le Marchand Sara Lindstrom Peter Kraft David J Hunter Susan Gapstur Stephen J Chanock Sonja I Berndt Demetrius Albanes Gerald Andriole Johanna Schleutker Maren Weischer Federico Canzian Elio Riboli Tim J Key Ruth C Travis Daniele Campa Sue A Ingles Esther M John Richard B Hayes Paul D P Pharoah Nora Pashayan Kay-Tee Khaw Janet L Stanford Elaine A Ostrander Lisa B Signorello Stephen N Thibodeau Dan Schaid Christiane Maier Walther Vogel Adam S Kibel Cezary Cybulski Jan Lubinski Lisa Cannon-Albright Hermann Brenner Jong Y Park Radka Kaneva Jyotsna Batra Amanda B Spurdle Judith A Clements Manuel R Teixeira Ed Dicks Andrew Lee Alison M Dunning Caroline Baynes Don Conroy Melanie J Maranian Shahana Ahmed Koveela Govindasami Michelle Guy Rosemary A Wilkinson Emma J Sawyer Angela Morgan David P Dearnaley Alan Horwich Robert A Huddart Vincent S Khoo Christopher C Parker Nicholas J Van As Christopher J Woodhouse Alan Thompson Tim Dudderidge Chris Ogden Colin S Cooper Artitaya Lophatananon Angela Cox Melissa C Southey John L Hopper Dallas R English Markus Aly Jan Adolfsson Jiangfeng Xu Siqun L Zheng Meredith Yeager Rudolf Kaaks W Ryan Diver Mia M Gaudet Mariana C Stern Roman Corral Amit D Joshi Ahva Shahabi Tiina Wahlfors Teuvo L J Tammela Anssi Auvinen Jarmo Virtamo Peter Klarskov Børge G Nordestgaard M Andreas Røder Sune F Nielsen Stig E Bojesen Afshan Siddiq Liesel M Fitzgerald Suzanne Kolb Erika M Kwon Danielle M Karyadi William J Blot Wei Zheng Qiuyin Cai Shannon K McDonnell Antje E Rinckleb Bettina Drake Graham Colditz Dominika Wokolorczyk Robert A Stephenson Craig Teerlink Heiko Muller Dietrich Rothenbacher Thomas A Sellers Hui-Yi Lin Chavdar Slavov Vanio Mitev Felicity Lose Srilakshmi Srinivasan Sofia Maia Paula Paulo Ethan Lange Kathleen A Cooney Antonis C Antoniou Daniel Vincent François Bacot Daniel C Tessier Zsofia Kote-Jarai Douglas F Easton

Nat Genet 2013 Apr;45(4):385-91, 391e1-2

The Institute of Cancer Research, Sutton, UK.

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http://dx.doi.org/10.1038/ng.2560	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3832790	PMC

April 2013

A copy number variant at the KITLG locus likely confers risk for canine squamous cell carcinoma of the digit.

Authors:

Danielle M Karyadi Eric Karlins Brennan Decker Bridgett M vonHoldt Gretchen Carpintero-Ramirez Heidi G Parker Robert K Wayne Elaine A Ostrander

PLoS Genet 2013 Mar 28;9(3):e1003409. Epub 2013 Mar 28.

National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003409	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610924	PMC

March 2013

A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.

Authors:

Ali Amin Al Olama Zsofia Kote-Jarai Fredrick R Schumacher Fredrik Wiklund Sonja I Berndt Sara Benlloch Graham G Giles Gianluca Severi David E Neal Freddie C Hamdy Jenny L Donovan David J Hunter Brian E Henderson Michael J Thun Michael Gaziano Edward L Giovannucci Afshan Siddiq Ruth C Travis David G Cox Federico Canzian Elio Riboli Timothy J Key Gerald Andriole Demetrius Albanes Richard B Hayes Johanna Schleutker Anssi Auvinen Teuvo L J Tammela Maren Weischer Janet L Stanford Elaine A Ostrander Cezary Cybulski Jan Lubinski Stephen N Thibodeau Daniel J Schaid Karina D Sorensen Jyotsna Batra Judith A Clements Suzanne Chambers Joanne Aitken Robert A Gardiner Christiane Maier Walther Vogel Thilo Dörk Hermann Brenner Tomonori Habuchi Sue Ingles Esther M John Joanne L Dickinson Lisa Cannon-Albright Manuel R Teixeira Radka Kaneva Hong-Wei Zhang Yong-Jie Lu Jong Y Park Kathleen A Cooney Kenneth R Muir Daniel A Leongamornlert Edward Saunders Malgorzata Tymrakiewicz Nadiya Mahmud Michelle Guy Koveela Govindasami Lynne T O'Brien Rosemary A Wilkinson Amanda L Hall Emma J Sawyer Tokhir Dadaev Jonathan Morrison David P Dearnaley Alan Horwich Robert A Huddart Vincent S Khoo Christopher C Parker Nicholas Van As Christopher J Woodhouse Alan Thompson Tim Dudderidge Chris Ogden Colin S Cooper Artitaya Lophatonanon Melissa C Southey John L Hopper Dallas English Jarmo Virtamo Loic Le Marchand Daniele Campa Rudolf Kaaks Sara Lindstrom W Ryan Diver Susan Gapstur Meredith Yeager Angela Cox Mariana C Stern Roman Corral Markus Aly William Isaacs Jan Adolfsson Jianfeng Xu S Lilly Zheng Tiina Wahlfors Kimmo Taari Paula Kujala Peter Klarskov Børge G Nordestgaard M Andreas Røder Ruth Frikke-Schmidt Stig E Bojesen Liesel M FitzGerald Suzanne Kolb Erika M Kwon Danielle M Karyadi Torben Falck Orntoft Michael Borre Antje Rinckleb Manuel Luedeke Kathleen Herkommer Andreas Meyer Jürgen Serth James R Marthick Briony Patterson Dominika Wokolorczyk Amanda Spurdle Felicity Lose Shannon K McDonnell Amit D Joshi Ahva Shahabi Pedro Pinto Joana Santos Ana Ray Thomas A Sellers Hui-Yi Lin Robert A Stephenson Craig Teerlink Heiko Muller Dietrich Rothenbacher Norihiko Tsuchiya Shintaro Narita Guang-Wen Cao Chavdar Slavov Vanio Mitev Stephen Chanock Henrik Gronberg Christopher A Haiman Peter Kraft Douglas F Easton Rosalind A Eeles

Hum Mol Genet 2013 Jan 12;22(2):408-15. Epub 2012 Oct 12.

Strangeways Laboratory, Centre for Cancer Genetic Epidemiology, Worts Causeway, Cambridge CB1 8RN, UK.

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http://hmg.oxfordjournals.org/content/22/2/408.full.pdf	Web Search
http://www.hmg.oxfordjournals.org/cgi/doi/10.1093/hmg/dds425	Publisher Site
http://dx.doi.org/10.1093/hmg/dds425	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526158	PMC

January 2013

The MTAP-CDKN2A locus confers susceptibility to a naturally occurring canine cancer.

Cancer Epidemiol Biomarkers Prev 2012 Jul 23;21(7):1019-27. Epub 2012 May 23.

Cancer Genetics Branch, National Human Genome Research Institute, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-12-0190-T	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392365	PMC

July 2012

Analysis of Xq27-28 linkage in the international consortium for prostate cancer genetics (ICPCG) families.

Authors:

Joan E Bailey-Wilson Erica J Childs Cheryl D Cropp Daniel J Schaid Jianfeng Xu Nicola J Camp Lisa A Cannon-Albright James M Farnham Asha George Isaac Powell John D Carpten Graham G Giles John L Hopper Gianluca Severi Dallas R English William D Foulkes Lovise Mæhle Pål Møller Rosalind Eeles Douglas Easton Michelle Guy Steve Edwards Michael D Badzioch Alice S Whittemore Ingrid Oakley-Girvan Chih-Lin Hsieh Latchezar Dimitrov Janet L Stanford Danielle M Karyadi Kerry Deutsch Laura McIntosh Elaine A Ostrander Kathleen E Wiley Sarah D Isaacs Patrick C Walsh Stephen N Thibodeau Shannon K McDonnell Scott Hebbring Ethan M Lange Kathleen A Cooney Teuvo L J Tammela Johanna Schleutker Christiane Maier Sylvia Bochum Josef Hoegel Henrik Grönberg Fredrik Wiklund Monica Emanuelsson Geraldine Cancel-Tassin Antoine Valeri Olivier Cussenot William B Isaacs

BMC Med Genet 2012 Jun 19;13:46. Epub 2012 Jun 19.

Inherited Disease Research Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD 21224, USA.

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http://dx.doi.org/10.1186/1471-2350-13-46	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3495053	PMC

June 2012

Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.

Authors:

Zsofia Kote-Jarai Ali Amin Al Olama Graham G Giles Gianluca Severi Johanna Schleutker Maren Weischer Daniele Campa Elio Riboli Tim Key Henrik Gronberg David J Hunter Peter Kraft Michael J Thun Sue Ingles Stephen Chanock Demetrius Albanes Richard B Hayes David E Neal Freddie C Hamdy Jenny L Donovan Paul Pharoah Fredrick Schumacher Brian E Henderson Janet L Stanford Elaine A Ostrander Karina Dalsgaard Sorensen Thilo Dörk Gerald Andriole Joanne L Dickinson Cezary Cybulski Jan Lubinski Amanda Spurdle Judith A Clements Suzanne Chambers Joanne Aitken R A Frank Gardiner Stephen N Thibodeau Dan Schaid Esther M John Christiane Maier Walther Vogel Kathleen A Cooney Jong Y Park Lisa Cannon-Albright Hermann Brenner Tomonori Habuchi Hong-Wei Zhang Yong-Jie Lu Radka Kaneva Ken Muir Sara Benlloch Daniel A Leongamornlert Edward J Saunders Malgorzata Tymrakiewicz Nadiya Mahmud Michelle Guy Lynne T O'Brien Rosemary A Wilkinson Amanda L Hall Emma J Sawyer Tokhir Dadaev Jonathan Morrison David P Dearnaley Alan Horwich Robert A Huddart Vincent S Khoo Christopher C Parker Nicholas Van As Christopher J Woodhouse Alan Thompson Tim Christmas Chris Ogden Colin S Cooper Aritaya Lophatonanon Melissa C Southey John L Hopper Dallas R English Tiina Wahlfors Teuvo L J Tammela Peter Klarskov Børge G Nordestgaard M Andreas Røder Anne Tybjærg-Hansen Stig E Bojesen Ruth Travis Federico Canzian Rudolf Kaaks Fredrik Wiklund Markus Aly Sara Lindstrom W Ryan Diver Susan Gapstur Mariana C Stern Roman Corral Jarmo Virtamo Angela Cox Christopher A Haiman Loic Le Marchand Liesel Fitzgerald Suzanne Kolb Erika M Kwon Danielle M Karyadi Torben Falck Orntoft Michael Borre Andreas Meyer Jürgen Serth Meredith Yeager Sonja I Berndt James R Marthick Briony Patterson Dominika Wokolorczyk Jyotsna Batra Felicity Lose Shannon K McDonnell Amit D Joshi Ahva Shahabi Antje E Rinckleb Ana Ray Thomas A Sellers Hui-Yi Lin Robert A Stephenson James Farnham Heiko Muller Dietrich Rothenbacher Norihiko Tsuchiya Shintaro Narita Guang-Wen Cao Chavdar Slavov Vanio Mitev Douglas F Easton Rosalind A Eeles

Nat Genet 2011 Jul 10;43(8):785-91. Epub 2011 Jul 10.

The Institute of Cancer Research, Sutton, Surrey, UK.

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http://dx.doi.org/10.1038/ng.882	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3396006	PMC

July 2011

Family-based association analysis of 42 hereditary prostate cancer families identifies the Apolipoprotein L3 region on chromosome 22q12 as a risk locus.

Authors:

Bo Johanneson Shannon K McDonnell Danielle M Karyadi Pascale Quignon Laura McIntosh Shaun M Riska Liesel M FitzGerald Gregory Johnson Kerry Deutsch Gabrielle Williams Lori S Tillmans Janet L Stanford Daniel J Schaid Stephen N Thibodeau Elaine A Ostrander

Hum Mol Genet 2010 Oct 14;19(19):3852-62. Epub 2010 Jul 14.

National Human Genome Research Institute, National Institutes of Health, 50 South Drive, Building 50, Room 5351, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/hmg/ddq283	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935853	PMC

October 2010

Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.

Authors:

Rosalind A Eeles Zsofia Kote-Jarai Ali Amin Al Olama Graham G Giles Michelle Guy Gianluca Severi Kenneth Muir John L Hopper Brian E Henderson Christopher A Haiman Johanna Schleutker Freddie C Hamdy David E Neal Jenny L Donovan Janet L Stanford Elaine A Ostrander Sue A Ingles Esther M John Stephen N Thibodeau Daniel Schaid Jong Y Park Amanda Spurdle Judith Clements Joanne L Dickinson Christiane Maier Walther Vogel Thilo Dörk Timothy R Rebbeck Kathleen A Cooney Lisa Cannon-Albright Pierre O Chappuis Pierre Hutter Maurice Zeegers Radka Kaneva Hong-Wei Zhang Yong-Jie Lu William D Foulkes Dallas R English Daniel A Leongamornlert Malgorzata Tymrakiewicz Jonathan Morrison Audrey T Ardern-Jones Amanda L Hall Lynne T O'Brien Rosemary A Wilkinson Edward J Saunders Elizabeth C Page Emma J Sawyer Stephen M Edwards David P Dearnaley Alan Horwich Robert A Huddart Vincent S Khoo Christopher C Parker Nicholas Van As Christopher J Woodhouse Alan Thompson Tim Christmas Chris Ogden Colin S Cooper Melissa C Southey Artitaya Lophatananon Jo-Fen Liu Laurence N Kolonel Loic Le Marchand Tiina Wahlfors Teuvo L Tammela Anssi Auvinen Sarah J Lewis Angela Cox Liesel M FitzGerald Joseph S Koopmeiners Danielle M Karyadi Erika M Kwon Mariana C Stern Roman Corral Amit D Joshi Ahva Shahabi Shannon K McDonnell Thomas A Sellers Julio Pow-Sang Suzanne Chambers Joanne Aitken R A Frank Gardiner Jyotsna Batra Mary Anne Kedda Felicity Lose Andrea Polanowski Briony Patterson Jürgen Serth Andreas Meyer Manuel Luedeke Klara Stefflova Anna M Ray Ethan M Lange Jim Farnham Humera Khan Chavdar Slavov Atanaska Mitkova Guangwen Cao Douglas F Easton

Nat Genet 2009 Oct 20;41(10):1116-21. Epub 2009 Sep 20.

The Institute of Cancer Research, Sutton, Surrey, UK.

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http://dx.doi.org/10.1038/ng.450	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2846760	PMC

October 2009

Identification and characterization of novel SNPs in CHEK2 in Ashkenazi Jewish men with prostate cancer.

Cancer Lett 2008 Oct 20;270(1):173-80. Epub 2008 Jun 20.

Department of Oncology and Medical Genetics, Cancer Prevention Centre, E740, Sir MB Davis-Jewish General Hospital, McGill University, Montreal, QC, Canada.

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http://linkinghub.elsevier.com/retrieve/pii/S030438350800365	Publisher Site
http://dx.doi.org/10.1016/j.canlet.2008.05.006	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2969172	PMC