Danielle G Lemay

Danielle G Lemay

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Danielle G Lemay

Danielle G Lemay

Publications by authors named "Danielle G Lemay"

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Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults.

J Nutr Biochem 2020 Jan 17;79:108340. Epub 2020 Jan 17.

Genome Center, University of California-Davis, Davis, California, United States; Foods for Health Institute, University of California, Davis, California, United States; USDA ARS Western Human Nutrition Research Center, Davis, California, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jnutbio.2020.108340DOI Listing
January 2020

Temporal changes in postprandial blood transcriptomes reveal subject-specific pattern of expression of innate immunity genes after a high-fat meal.

J Nutr Biochem 2019 Oct 21;72:108209. Epub 2019 Jun 21.

USDA-ARS Western Human Nutrition Research Center, 430 West Health Sciences Dr., Davis, CA 95616; Department of Nutrition, University of California-Davis, One Shields Avenue, Davis, CA, 95616. Electronic address:

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http://dx.doi.org/10.1016/j.jnutbio.2019.06.007DOI Listing
October 2019

The fecal resistome of dairy cattle is associated with diet during nursing.

Nat Commun 2019 09 27;10(1):4406. Epub 2019 Sep 27.

Department of Food Science and Technology, Robert Mondavi Institute for Wine and Food Science, University of California, Davis, One Shields Ave., Davis, CA, 95616, USA.

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http://dx.doi.org/10.1038/s41467-019-12111-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6765000PMC
September 2019

The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium.

PLoS One 2018 22;13(8):e0201637. Epub 2018 Aug 22.

Genome Center, University of California Davis, Davis, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0201637PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6104928PMC
January 2019

SAMSA2: a standalone metatranscriptome analysis pipeline.

BMC Bioinformatics 2018 05 21;19(1):175. Epub 2018 May 21.

Genome Center, University of California, Davis, California, USA.

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http://dx.doi.org/10.1186/s12859-018-2189-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5963165PMC
May 2018

SAMSA: a comprehensive metatranscriptome analysis pipeline.

BMC Bioinformatics 2016 Sep 29;17(1):399. Epub 2016 Sep 29.

Genome Center, University of California - Davis, Davis, CA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5041328PMC
http://dx.doi.org/10.1186/s12859-016-1270-8DOI Listing
September 2016

Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells.

BMC Microbiol 2015 Aug 25;15:172. Epub 2015 Aug 25.

Foods for Health Institute University of California, Davis, Davis, CA, 95616, USA.

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http://dx.doi.org/10.1186/s12866-015-0508-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4548914PMC
August 2015

Changes in intestinal barrier function and gut microbiota in high-fat diet-fed rats are dynamic and region dependent.

Am J Physiol Gastrointest Liver Physiol 2015 May 6;308(10):G840-51. Epub 2015 Mar 6.

Department of Anatomy, Physiology and Cell Biology, University of California Davis School of Veterinary Medicine, Davis, California;

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http://dx.doi.org/10.1152/ajpgi.00029.2015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4437018PMC
May 2015

Comparative Proteomics of Human and Macaque Milk Reveals Species-Specific Nutrition during Postnatal Development.

J Proteome Res 2015 May 6;14(5):2143-57. Epub 2015 Apr 6.

⊥Department of Human Evolutionary Biology, Harvard University, 11 Divinity Avenue, Cambridge, Massachusetts 02138, United States.

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http://pubs.acs.org/doi/10.1021/pr501243m
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http://dx.doi.org/10.1021/pr501243mDOI Listing
May 2015

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants.

Microbiome 2015 10;3:13. Epub 2015 Apr 10.

Department of Food Science and Technology, UC Davis, 1 Shields Avenue, Davis, CA 95616 USA ; Department of Viticulture and Enology, UC Davis, 1 Shields Avenue, Davis, CA 95616 USA ; Foods For Health Institute, UC Davis, 1 Peter J Shields Avenue, Davis, CA 95616 USA.

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http://dx.doi.org/10.1186/s40168-015-0071-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412032PMC
April 2015

Comparative genomics reveals tissue-specific regulation of prolactin receptor gene expression.

J Mol Endocrinol 2015 Feb 30;54(1):1-15. Epub 2014 Oct 30.

Department of Animal ScienceGenome CenterUniversity of California Davis, 2335 Meyer Hall, One Shields Avenue, Davis, California 95616, USABaylor College of MedicineUSDA/ARS Children's Nutrition Research Center, 1100 Bates Street, Room 9022, Houston, Texas, USAUSDAARS, U.S. Meat Animal Research Center, PO Box 166, Clay Center, Nebraska 68933, USA.

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https://jme.bioscientifica.com/view/journals/jme/54/1/1.xml
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http://dx.doi.org/10.1530/JME-14-0212DOI Listing
February 2015

The human colostrum whey proteome is altered in gestational diabetes mellitus.

J Proteome Res 2015 Jan 1;14(1):512-20. Epub 2014 Dec 1.

National Institute of Health West Coast Metabolomics Center, ‡Genome Center, §Genome Center Proteomics Core Facility, ⊥Department of Food Science and Technology, and ¶Foods for Health Institute, University of California Davis , Davis, California 95616, United States.

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http://dx.doi.org/10.1021/pr500818dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286167PMC
January 2015

Epigenetic modifications unlock the milk protein gene loci during mouse mammary gland development and differentiation.

PLoS One 2013 2;8(1):e53270. Epub 2013 Jan 2.

United States Department of Agriculture/Agriculture Research Service Children's Nutrition Research Center, Department of Pediatrics-Nutrition, Baylor College of Medicine, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053270PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3534698PMC
August 2013

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.

BMC Bioinformatics 2012 Sep 28;13:253. Epub 2012 Sep 28.

Genome Center, University of California Davis, 451 Health Science Dr, Davis, CA, 95616, United States of America.

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http://dx.doi.org/10.1186/1471-2105-13-253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3575404PMC
September 2012

Lactosomes: structural and compositional classification of unique nanometer-sized protein lipid particles of human milk.

J Agric Food Chem 2010 Nov 6;58(21):11234-42. Epub 2010 Oct 6.

Department of Animal Science, The Robert H Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, P.O. Box 12, Rehovot 76100.

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http://dx.doi.org/10.1021/jf102495sDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039697PMC
November 2010

Lessons from the bovine genome: implications for human nutrition and research.

J Nutr 2009 Jul 6;139(7):1271-2. Epub 2009 May 6.

Department of Food Science and Technology, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.3945/jn.109.107656DOI Listing
July 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:
Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200PMC
April 2009

Unlocking the bovine genome.

BMC Genomics 2009 Apr 24;10:193. Epub 2009 Apr 24.

CSIRO Livestock Industries, St Lucia, QLD, Australia.

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http://dx.doi.org/10.1186/1471-2164-10-193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680899PMC
April 2009

Milk Fat Globule structure & function; nanosciece comes to milk production.

Trends Food Sci Technol 2008 Dec;19(12)

Department of food Science and Technology, University of California, Davis, 1 Shields Avenue, Davis, CA 95616, United States ; Nestle Research Center, Lausanne, Switzerland.

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http://dx.doi.org/10.1016/j.tifs.2008.07.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868455PMC
December 2008

Building the bridges to bioinformatics in nutrition research.

Am J Clin Nutr 2007 Nov;86(5):1261-9

Department of Food Science and Technology, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/ajcn/86.5.1261DOI Listing
November 2007

Gene regulatory networks in lactation: identification of global principles using bioinformatics.

BMC Syst Biol 2007 Nov 27;1:56. Epub 2007 Nov 27.

Department of Food Science and Technology, University of California, One Shields Ave,, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/1752-0509-1-56DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2225983PMC
November 2007

Genome-wide identification of peroxisome proliferator response elements using integrated computational genomics.

J Lipid Res 2006 Jul 3;47(7):1583-7. Epub 2006 Apr 3.

United States Department of Agriculture, Agricultural Research Service, Western Human Nutrition Research Center, and Department of Nutrition, University of California-Davis, 95616, USA.

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http://dx.doi.org/10.1194/jlr.M500504-JLR200DOI Listing
July 2006

The regulation of the expression of inducible nitric oxide synthase by Src-family tyrosine kinases mediated through MyD88-independent signaling pathways of Toll-like receptor 4.

Biochem Pharmacol 2005 Oct;70(8):1231-40

Department of Nutrition, University of California-Davis, ARS, Western Human Nutrition Research Center, Meyer Hall, 95616, USA.

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http://dx.doi.org/10.1016/j.bcp.2005.07.020DOI Listing
October 2005

Saturated and polyunsaturated fatty acids reciprocally modulate dendritic cell functions mediated through TLR4.

J Immunol 2005 May;174(9):5390-7

U.S. Department of Agriculture, Agricultural Research Service, Western Human Nutrition Research Center, and Department of Nutrition, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.4049/jimmunol.174.9.5390DOI Listing
May 2005