Publications by authors named "Daniel W Chan"

178Publications

Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.

Authors:
Chen Huang Lijun Chen Sara R Savage Rodrigo Vargas Eguez Yongchao Dou Yize Li Felipe da Veiga Leprevost Eric J Jaehnig Jonathan T Lei Bo Wen Michael Schnaubelt Karsten Krug Xiaoyu Song Marcin Cieślik Hui-Yin Chang Matthew A Wyczalkowski Kai Li Antonio Colaprico Qing Kay Li David J Clark Yingwei Hu Liwei Cao Jianbo Pan Yuefan Wang Kyung-Cho Cho Zhiao Shi Yuxing Liao Wen Jiang Meenakshi Anurag Jiayi Ji Seungyeul Yoo Daniel Cui Zhou Wen-Wei Liang Michael Wendl Pankaj Vats Steven A Carr D R Mani Zhen Zhang Jiang Qian Xi S Chen Alexander R Pico Pei Wang Arul M Chinnaiyan Karen A Ketchum Christopher R Kinsinger Ana I Robles Eunkyung An Tara Hiltke Mehdi Mesri Mathangi Thiagarajan Alissa M Weaver Andrew G Sikora Jan Lubiński Małgorzata Wierzbicka Maciej Wiznerowicz Shankha Satpathy Michael A Gillette George Miles Matthew J Ellis Gilbert S Omenn Henry Rodriguez Emily S Boja Saravana M Dhanasekaran Li Ding Alexey I Nesvizhskii Adel K El-Naggar Daniel W Chan Hui Zhang Bing Zhang

Cancer Cell 2021 Jan 7. Epub 2021 Jan 7.

Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, TX 77030, USA; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address:

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January 2021

Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets.

Authors:
Yangying Zhou T Mamie Lih Jianbo Pan Naseruddin Höti Mingming Dong Liwei Cao Yingwei Hu Kyung-Cho Cho Shao-Yung Chen Rodrigo Vargas Eguez Edward Gabrielson Daniel W Chan Hui Zhang Qing Kay Li

J Hematol Oncol 2020 12 7;13(1):170. Epub 2020 Dec 7.

Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, 21231, USA.

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December 2020

Urinary glycoproteins associated with aggressive prostate cancer.

Authors:
Mingming Dong T Mamie Lih Shao-Yung Chen Kyung-Cho Cho Rodrigo Vargas Eguez Naseruddin Höti Yangying Zhou Weiming Yang Leslie Mangold Daniel W Chan Zhen Zhang Lori J Sokoll Alan Partin Hui Zhang

Theranostics 2020 25;10(26):11892-11907. Epub 2020 Oct 25.

Department of Pathology, School of Medicine, Johns Hopkins University, Baltimore, Maryland 21231, USA.

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October 2020

Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma.

Authors:
Yingwei Hu Jianbo Pan Punit Shah Minghui Ao Stefani N Thomas Yang Liu Lijun Chen Michael Schnaubelt David J Clark Henry Rodriguez Emily S Boja Tara Hiltke Christopher R Kinsinger Karin D Rodland Qing Kay Li Jiang Qian Zhen Zhang Daniel W Chan Hui Zhang

Cell Rep 2020 Oct;33(3):108276

Department of Pathology, Johns Hopkins University, School of Medicine, Baltimore, MD 21287, USA. Electronic address:

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October 2020

A high-stringency blueprint of the human proteome.

Authors:
Subash Adhikari Edouard C Nice Eric W Deutsch Lydie Lane Gilbert S Omenn Stephen R Pennington Young-Ki Paik Christopher M Overall Fernando J Corrales Ileana M Cristea Jennifer E Van Eyk Mathias Uhlén Cecilia Lindskog Daniel W Chan Amos Bairoch James C Waddington Joshua L Justice Joshua LaBaer Henry Rodriguez Fuchu He Markus Kostrzewa Peipei Ping Rebekah L Gundry Peter Stewart Sanjeeva Srivastava Sudhir Srivastava Fabio C S Nogueira Gilberto B Domont Yves Vandenbrouck Maggie P Y Lam Sara Wennersten Juan Antonio Vizcaino Marc Wilkins Jochen M Schwenk Emma Lundberg Nuno Bandeira Gyorgy Marko-Varga Susan T Weintraub Charles Pineau Ulrike Kusebauch Robert L Moritz Seong Beom Ahn Magnus Palmblad Michael P Snyder Ruedi Aebersold Mark S Baker

Nat Commun 2020 10 16;11(1):5301. Epub 2020 Oct 16.

Faculty of Medicine, Health and Human Sciences, Department of Biomedical Sciences, Macquarie University, North Ryde, NSW, 2109, Australia.

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October 2020

Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.

Authors:
Jason E McDermott Osama A Arshad Vladislav A Petyuk Yi Fu Marina A Gritsenko Therese R Clauss Ronald J Moore Athena A Schepmoes Rui Zhao Matthew E Monroe Michael Schnaubelt Chia-Feng Tsai Samuel H Payne Chen Huang Liang-Bo Wang Steven Foltz Matthew Wyczalkowski Yige Wu Ehwang Song Molly A Brewer Mathangi Thiagarajan Christopher R Kinsinger Ana I Robles Emily S Boja Henry Rodriguez Daniel W Chan Bing Zhang Zhen Zhang Li Ding Richard D Smith Tao Liu Karin D Rodland

Cell Rep Med 2020 Aug;1(5)

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August 2020

Proteomic Analysis of the Air-Way Fluid in Lung Cancer. Detection of Periostin in Bronchoalveolar Lavage (BAL).

Authors:
Yangying Zhou Weiming Yang Minghui Ao Naseruddin Höti Edward Gabrielson Daniel W Chan Hui Zhang Qing Kay Li

Front Oncol 2020 3;10:1072. Epub 2020 Jul 3.

Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, MD, United States.

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July 2020

Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes.

Authors:
Stefani N Thomas Betty Friedrich Michael Schnaubelt Daniel W Chan Hui Zhang Ruedi Aebersold

iScience 2020 Jun 18;23(6):101079. Epub 2020 Apr 18.

Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Otto-Stern-Weg 3, 8093 Zürich, Switzerland; Faculty of Science, University of Zürich, Zürich, Switzerland. Electronic address:

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June 2020

Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.

Authors:
Jason E McDermott Osama A Arshad Vladislav A Petyuk Yi Fu Marina A Gritsenko Therese R Clauss Ronald J Moore Athena A Schepmoes Rui Zhao Matthew E Monroe Michael Schnaubelt Chia-Feng Tsai Samuel H Payne Chen Huang Liang-Bo Wang Steven Foltz Matthew Wyczalkowski Yige Wu Ehwang Song Molly A Brewer Mathangi Thiagarajan Christopher R Kinsinger Ana I Robles Emily S Boja Henry Rodriguez Daniel W Chan Bing Zhang Zhen Zhang Li Ding Richard D Smith Tao Liu Karin D Rodland

Cell Rep Med 2020 Apr 10;1(1). Epub 2020 Apr 10.

Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.

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April 2020

Development and evaluation of the MiCheck test for aggressive prostate cancer.

Authors:
Neal D Shore Christopher M Pieczonka R Jonathan Henderson James L Bailen Daniel R Saltzstein Raoul S Concepcion Jennifer L Beebe-Dimmer Julie J Ruterbusch Rachel A Levin Sandra Wissmueller Thao Ho Le David Gillatt Daniel W Chan Douglas H Campbell Bradley J Walsh

Urol Oncol 2020 08 16;38(8):683.e11-683.e18. Epub 2020 Apr 16.

Minomic International Ltd, NSW, Sydney, Australia.

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August 2020

Correction to: Proteomic analysis of degradation ubiquitin signaling by ubiquitin occupancy changes responding to 26S proteasome inhibition.

Authors:
Ventzislava Hristova Shisheng Sun Hui Zhang Daniel W Chan

Clin Proteomics 2020 21;17. Epub 2020 Feb 21.

Department of Pathology, Johns Hopkins University, Baltimore, MD 21231 USA.

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February 2020

Proteomic analysis of degradation ubiquitin signaling by ubiquitin occupancy changes responding to 26S proteasome inhibition.

Authors:
Ventzislava Hristova Shisheng Sun Hui Zhang Daniel W Chan

Clin Proteomics 2020 25;17. Epub 2020 Jan 25.

Department of Pathology, Johns Hopkins University, Baltimore, MD 21231 USA.

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January 2020

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.

Authors:
David J Clark Saravana M Dhanasekaran Francesca Petralia Jianbo Pan Xiaoyu Song Yingwei Hu Felipe da Veiga Leprevost Boris Reva Tung-Shing M Lih Hui-Yin Chang Weiping Ma Chen Huang Christopher J Ricketts Lijun Chen Azra Krek Yize Li Dmitry Rykunov Qing Kay Li Lin S Chen Umut Ozbek Suhas Vasaikar Yige Wu Seungyeul Yoo Shrabanti Chowdhury Matthew A Wyczalkowski Jiayi Ji Michael Schnaubelt Andy Kong Sunantha Sethuraman Dmitry M Avtonomov Minghui Ao Antonio Colaprico Song Cao Kyung-Cho Cho Selim Kalayci Shiyong Ma Wenke Liu Kelly Ruggles Anna Calinawan Zeynep H Gümüş Daniel Geiszler Emily Kawaler Guo Ci Teo Bo Wen Yuping Zhang Sarah Keegan Kai Li Feng Chen Nathan Edwards Phillip M Pierorazio Xi Steven Chen Christian P Pavlovich A Ari Hakimi Gabriel Brominski James J Hsieh Andrzej Antczak Tatiana Omelchenko Jan Lubinski Maciej Wiznerowicz W Marston Linehan Christopher R Kinsinger Mathangi Thiagarajan Emily S Boja Mehdi Mesri Tara Hiltke Ana I Robles Henry Rodriguez Jiang Qian David Fenyö Bing Zhang Li Ding Eric Schadt Arul M Chinnaiyan Zhen Zhang Gilbert S Omenn Marcin Cieslik Daniel W Chan Alexey I Nesvizhskii Pei Wang Hui Zhang

Cell 2020 Jan;180(1):207

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January 2020

An Integrated Workflow for Global, Glyco-, and Phospho-proteomic Analysis of Tumor Tissues.

Authors:
Yangying Zhou Tung-Shing Mamie Lih Ganglong Yang Shao-Yung Chen Lijun Chen Daniel W Chan Hui Zhang Qing Kay Li

Anal Chem 2020 01 3;92(2):1842-1849. Epub 2020 Jan 3.

Department of Pathology , Johns Hopkins University School of Medicine , Baltimore , Maryland 21231 , United States.

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January 2020

Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.

Authors:
David J Clark Saravana M Dhanasekaran Francesca Petralia Jianbo Pan Xiaoyu Song Yingwei Hu Felipe da Veiga Leprevost Boris Reva Tung-Shing M Lih Hui-Yin Chang Weiping Ma Chen Huang Christopher J Ricketts Lijun Chen Azra Krek Yize Li Dmitry Rykunov Qing Kay Li Lin S Chen Umut Ozbek Suhas Vasaikar Yige Wu Seungyeul Yoo Shrabanti Chowdhury Matthew A Wyczalkowski Jiayi Ji Michael Schnaubelt Andy Kong Sunantha Sethuraman Dmitry M Avtonomov Minghui Ao Antonio Colaprico Song Cao Kyung-Cho Cho Selim Kalayci Shiyong Ma Wenke Liu Kelly Ruggles Anna Calinawan Zeynep H Gümüş Daniel Geiszler Emily Kawaler Guo Ci Teo Bo Wen Yuping Zhang Sarah Keegan Kai Li Feng Chen Nathan Edwards Phillip M Pierorazio Xi Steven Chen Christian P Pavlovich A Ari Hakimi Gabriel Brominski James J Hsieh Andrzej Antczak Tatiana Omelchenko Jan Lubinski Maciej Wiznerowicz W Marston Linehan Christopher R Kinsinger Mathangi Thiagarajan Emily S Boja Mehdi Mesri Tara Hiltke Ana I Robles Henry Rodriguez Jiang Qian David Fenyö Bing Zhang Li Ding Eric Schadt Arul M Chinnaiyan Zhen Zhang Gilbert S Omenn Marcin Cieslik Daniel W Chan Alexey I Nesvizhskii Pei Wang Hui Zhang

Cell 2019 10;179(4):964-983.e31

Department of Pathology, Johns Hopkins University, Baltimore, MD 21231, USA. Electronic address:

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October 2019

Development of a glycoproteomic strategy to detect more aggressive prostate cancer using lectin-immunoassays for serum fucosylated PSA.

Authors:
Ce Wang Naseruddin Höti Tung-Shing Mamie Lih Lori J Sokoll Rui Zhang Zhen Zhang Hui Zhang Daniel W Chan

Clin Proteomics 2019 6;16:13. Epub 2019 Apr 6.

1Department of Pathology, Johns Hopkins Medicine, Smith Bldg 4013, 400 N. Broadway, Baltimore, MD 21287 USA.

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April 2019

A multiplex immunoassay of serum biomarkers for the detection of uveal melanoma.

Authors:
Jin Song Shannath L Merbs Lori J Sokoll Daniel W Chan Zhen Zhang

Clin Proteomics 2019 5;16:10. Epub 2019 Mar 5.

1Center for Biomarker Discovery and Translation, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21287 USA.

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March 2019

Proteome-wide Tyrosine Phosphorylation Analysis Reveals Dysregulated Signaling Pathways in Ovarian Tumors.

Authors:
Guang Song Li Chen Bai Zhang Qifeng Song Yu Yu Cedric Moore Tian-Li Wang Ie-Ming Shih Hui Zhang Daniel W Chan Zhen Zhang Heng Zhu

Mol Cell Proteomics 2019 Mar 22;18(3):448-460. Epub 2020 Sep 22.

Department of Pharmacology & Molecular Sciences, Johns Hopkins School of Medicine, Baltimore, Maryland 21205;. Electronic address:

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March 2019

Validation of a novel model for the early detection of hepatocellular carcinoma.

Authors:
Philip M Hemken Lori J Sokoll Xiaoqing Yang Jianliang Dai Debra Elliott Susan H Gawel Michael Lucht Ziding Feng Jorge A Marrero Sudhir Srivastava Daniel W Chan Gerard J Davis

Clin Proteomics 2019 16;16. Epub 2019 Jan 16.

1Diagnostics Discovery Research and Development, Abbott Diagnostics, Abbott Laboratories, 100 Abbott Park Road, D09GP, AP20/1, Abbott Park, IL 60064 USA.

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January 2019

Cancer biomarker discovery and translation: proteomics and beyond.

Authors:
Ventzislava A Hristova Daniel W Chan

Expert Rev Proteomics 2019 02 24;16(2):93-103. Epub 2018 Dec 24.

a Department of Pathology , Johns Hopkins University School of Medicine , Baltimore , MD , USA.

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February 2019