Publications by authors named "Daniel Staines"

17Publications

Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data.

Methods Mol Biol 2017 ;1533:1-31

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1007/978-1-4939-6658-5_1DOI Listing
January 2018

Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomics Data.

Methods Mol Biol 2016 ;1374:115-40

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1007/978-1-4939-3167-5_6DOI Listing
May 2016

PhytoPath: an integrative resource for plant pathogen genomics.

Nucleic Acids Res 2016 Jan 17;44(D1):D688-93. Epub 2015 Oct 17.

The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire, CB10 1SD, UK

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http://dx.doi.org/10.1093/nar/gkv1052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702788PMC
January 2016

RSAT 2015: Regulatory Sequence Analysis Tools.

Nucleic Acids Res 2015 Jul 22;43(W1):W50-6. Epub 2015 Apr 22.

European Genomic Institute for Diabetes (EGID), F-3508, 59000 Lille, France Laboratoire de Bioinformatique des Génomes et des Réseaux (BiGRe), Université Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium

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http://dx.doi.org/10.1093/nar/gkv362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489296PMC
July 2015

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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http://dx.doi.org/10.1093/nar/gkv350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294PMC
July 2015

PomBase 2015: updates to the fission yeast database.

Nucleic Acids Res 2015 Jan 31;43(Database issue):D656-61. Epub 2014 Oct 31.

Cambridge Systems Biology and Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge, Cambridgeshire CB2 1GA, UK

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http://dx.doi.org/10.1093/nar/gku1040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383888PMC
January 2015

Ensembl Genomes 2013: scaling up access to genome-wide data.

Nucleic Acids Res 2014 Jan 25;42(Database issue):D546-52. Epub 2013 Oct 25.

The European Molecular Biology Laboratory, The European Bioinformatics Institute, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK, Wellcome Trust Sanger Centre, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK, Cold Spring Harbor Laboratory, 1 Bungtown Rd, Cold Spring Harbor, NY 11724, USA and USDA-ARS, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1093/nar/gkt979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965094PMC
January 2014

GrameneMart: the BioMart data portal for the Gramene project.

Database (Oxford) 2012 28;2012:bar056. Epub 2012 Feb 28.

Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.

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http://dx.doi.org/10.1093/database/bar056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289142PMC
June 2012

PomBase: a comprehensive online resource for fission yeast.

Nucleic Acids Res 2012 Jan 28;40(Database issue):D695-9. Epub 2011 Oct 28.

Cambridge Systems Biology Centre, Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge CB2 1GA, UK.

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http://dx.doi.org/10.1093/nar/gkr853DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245111PMC
January 2012

Ensembl BioMarts: a hub for data retrieval across taxonomic space.

Database (Oxford) 2011 23;2011:bar030. Epub 2011 Jul 23.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.

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http://dx.doi.org/10.1093/database/bar030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170168PMC
November 2011