Daniel Remondini

Daniel Remondini

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Daniel Remondini

Daniel Remondini

Publications by authors named "Daniel Remondini"

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The Hippo pathway modulates resistance to BET proteins inhibitors in lung cancer cells.

Oncogene 2019 Oct 12;38(42):6801-6817. Epub 2019 Aug 12.

Laboratory of Translational Research, Azienda USL di Reggio Emilia - IRCCS, Reggio Emilia, Italy.

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http://dx.doi.org/10.1038/s41388-019-0924-1DOI Listing
October 2019

Merging 1D and 3D genomic information: Challenges in modelling and validation.

Biochim Biophys Acta Gene Regul Mech 2019 Oct 28:194415. Epub 2019 Oct 28.

Department of Physics and Astronomy (DIFA), University of Bologna, Viale Berti Pichat 6/2, Bologna 40127, Italy; INFN Sez., Bologna, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.bbagrm.2019.194415DOI Listing
October 2019

Systems Biology approaches to cancer: towards new therapeutical strategies and personalized approaches.

Authors:
Daniel Remondini

Mol Cell Oncol 2019 2;6(3):1561118. Epub 2019 Apr 2.

Department of Physics and Astronomy, Bologna University, Bologna, Italy.

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http://dx.doi.org/10.1080/23723556.2018.1561118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6512913PMC
April 2019

Quantifying the contribution of four resistance mechanisms to ciprofloxacin MIC in Escherichia coli: a systematic review.

J Antimicrob Chemother 2019 02;74(2):298-310

Amsterdam UMC, University of Amsterdam, Department of Global Health, Amsterdam Institute for Global Health and Development, Meibergdreef 9, Amsterdam, Netherlands.

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http://dx.doi.org/10.1093/jac/dky417DOI Listing
February 2019

Cognitive Decline and Alzheimer's Disease in Old Age: A Sex-Specific Cytokinome Signature.

J Alzheimers Dis 2019 ;72(3):911-918

Institute of Gerontology and Geriatrics, Department of Medicine, University of Perugia, Perugia, Italy.

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http://dx.doi.org/10.3233/JAD-190480DOI Listing
January 2019

Toward the Authentication of European Sea Bass Origin through a Combination of Biometric Measurements and Multiple Analytical Techniques.

J Agric Food Chem 2018 Jul 25;66(26):6822-6831. Epub 2018 Jun 25.

Department of Veterinary Medical Science (DIMEVET) , University of Bologna , Via Tolara di Sopra 50 , 40064 Ozzano dell'Emilia , Bologna , Italy.

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http://dx.doi.org/10.1021/acs.jafc.8b00505DOI Listing
July 2018

Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules.

Sci Rep 2016 10 12;6:34841. Epub 2016 Oct 12.

Institute of Biomedical Technologies, National Research Council, Segrate (MI), via Fratelli Cervi 93, 20090, Italy.

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http://dx.doi.org/10.1038/srep34841DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5059623PMC
October 2016

Entropy-Based Network Representation of the Individual Metabolic Phenotype.

J Proteome Res 2016 09 1;15(9):3298-307. Epub 2016 Aug 1.

Magnetic Resonance Center, University of Florence , via Luigi Sacconi 6, 59100 Sesto Fiorentino, Italy.

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http://dx.doi.org/10.1021/acs.jproteome.6b00454DOI Listing
September 2016

Quality Matters: Systematic Analysis of Endpoints Related to "Cellular Life" in Vitro Data of Radiofrequency Electromagnetic Field Exposure.

Int J Environ Res Public Health 2016 07 12;13(7). Epub 2016 Jul 12.

CNR-Institute for Electromagnetic Sensing of the Environment, Napoli 80124, Italy.

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http://dx.doi.org/10.3390/ijerph13070701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4962242PMC
July 2016

Network measures for protein folding state discrimination.

Sci Rep 2016 07 28;6:30367. Epub 2016 Jul 28.

Department of Physics and Astronomy and INFN Sez. Bologna, University of Bologna, Viale B. Pichat 6/2 40127 Bologna, Italy.

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http://dx.doi.org/10.1038/srep30367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4964642PMC
July 2016

Active Degradation Explains the Distribution of Nuclear Proteins during Cellular Senescence.

PLoS One 2015 26;10(6):e0118442. Epub 2015 Jun 26.

Department of Physics and Astronomy, Bologna University, Bologna, Italy and INFN Bologna.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0118442PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4483236PMC
April 2016

Characterization of DNA methylation as a function of biological complexity via dinucleotide inter-distances.

Philos Trans A Math Phys Eng Sci 2016 03;374(2063)

Department of Physics and Astronomy, University of Bologna, Viale B. Pichat 6/2, Bologna 40127, Italy Bologna Unit, INFN, Viale B. Pichat 6/2, Bologna 40127, Italy

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http://dx.doi.org/10.1098/rsta.2015.0227DOI Listing
March 2016

Methods for the integration of multi-omics data: mathematical aspects.

BMC Bioinformatics 2016 Jan 20;17 Suppl 2:15. Epub 2016 Jan 20.

Institute of Biomedical Technologies - CNR, Via Fratelli Cervi 93, Segrate MI, 20090, Italy.

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http://dx.doi.org/10.1186/s12859-015-0857-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4959355PMC
January 2016

Statistical strategies and stochastic predictive models for the MARK-AGE data.

Mech Ageing Dev 2015 Nov 21;151:45-53. Epub 2015 Jul 21.

Interdepartmental Center Galvani "CIG", Via Selmi, 3 University of Bologna, Bologna, Italy; Physics and Astronomy Department, Viale Berti Pichat 6/2, University of Bologna, Bologna, Italy.

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http://dx.doi.org/10.1016/j.mad.2015.07.001DOI Listing
November 2015

Lifelong maintenance of composition, function and cellular/subcellular distribution of proteasomes in human liver.

Mech Ageing Dev 2014 Nov-Dec;141-142:26-34. Epub 2014 Oct 1.

Interdepartmental Centre "L. Galvani" for Integrated Studies on Biophysics, Bioinformatics and Biocomplexity (CIG), Alma Mater Studiorum, University of Bologna, 40126 Bologna, Italy; Department of Experimental, Diagnostic and Specialty Medicine (DIMES), Alma Mater Studiorum, University of Bologna, 40126 Bologna, Italy; IRCCS Institute of Neurological Sciences, 40139 Bologna, Italy; National Research Council of Italy, CNR, Institute for Organic Synthesis and Photoreactivity (ISOF), 40129 Bologna, Italy; National Research Council of Italy, CNR, Institute of Molecular Genetics, Unit of Bologna IOR, 40136 Italy. Electronic address:

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http://dx.doi.org/10.1016/j.mad.2014.09.003DOI Listing
September 2015

Weighted multiplex networks.

PLoS One 2014 6;9(6):e97857. Epub 2014 Jun 6.

School of Mathematical Sciences, Queen Mary University of London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097857PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4048161PMC
August 2015

Multiscale characterization of ageing and cancer progression by a novel network entropy measure.

Mol Biosyst 2015 Jul;11(7):1824-31

Department of Physics and Astronomy and INFN, Bologna University, Viale B. Pichat 6/2, 40127 Bologna, Italy.

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http://dx.doi.org/10.1039/c5mb00143aDOI Listing
July 2015

Entropy of a network ensemble: definitions and applications to genomic data.

Theor Biol Forum 2014 ;107(1-2):77-87

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May 2015

Correlations between weights and overlap in ensembles of weighted multiplex networks.

Phys Rev E Stat Nonlin Soft Matter Phys 2014 Dec 31;90(6):062817. Epub 2014 Dec 31.

School of Mathematical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom.

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http://dx.doi.org/10.1103/PhysRevE.90.062817DOI Listing
December 2014

Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing.

Front Genet 2014 26;5:253. Epub 2014 Aug 26.

Department of Physics and Astronomy, L. Galvani Center for Biocomplexity, Biophysics and Systems Biology, University of Bologna Bologna, Italy.

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http://dx.doi.org/10.3389/fgene.2014.00253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143968PMC
September 2014

Changes in IgG and total plasma protein glycomes in acute systemic inflammation.

Sci Rep 2014 Mar 11;4:4347. Epub 2014 Mar 11.

1] Genos Glycoscience Laboratory, Zagreb, Croatia [2] University of Zagreb, Faculty of Pharmacy and Biochemistry, Department of Biochemistry and Molecular Biology, Zagreb, Croatia [3].

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http://dx.doi.org/10.1038/srep04347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949295PMC
March 2014

The posterior iliac crest outperforms the anterior iliac crest when obtaining mesenchymal stem cells from bone marrow.

J Bone Joint Surg Am 2013 Jun;95(12):1101-7

Osteoarticular Regeneration Laboratory, 2nd Clinic of Orthopaedics and Traumatology, Rizzoli Orthopaedic Institute, Bologna, Italy.

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http://dx.doi.org/10.2106/JBJS.L.00429DOI Listing
June 2013

Efficient isolation and enrichment of mesenchymal stem cells from bone marrow.

Cytotherapy 2012 Jul 10;14(6):686-93. Epub 2012 May 10.

Bone Regeneration Laboratory, 2nd Clinic of Orthopaedics and Traumatology, Rizzoli Orthopaedic Institute, Bologna, Italy.

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http://dx.doi.org/10.3109/14653249.2012.677821DOI Listing
July 2012

Bistability in the chemical master equation for dual phosphorylation cycles.

J Chem Phys 2012 Jun;136(23):235102

Physics Department of Bologna University, Bologna 40127, Italy.

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http://dx.doi.org/10.1063/1.4725180DOI Listing
June 2012

Measures of centrality based on the spectrum of the Laplacian.

Phys Rev E Stat Nonlin Soft Matter Phys 2012 Jun 20;85(6 Pt 2):066127. Epub 2012 Jun 20.

Department of Mathematics, Dartmouth College, Hanover, New Hampshire 03755, USA.

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https://link.aps.org/doi/10.1103/PhysRevE.85.066127
Publisher Site
http://dx.doi.org/10.1103/PhysRevE.85.066127DOI Listing
June 2012

Pooled genome-wide analysis to identify novel risk loci for pediatric allergic asthma.

PLoS One 2011 Feb 16;6(2):e16912. Epub 2011 Feb 16.

Pediatric Unit, Department of Gynecologic, Obstetric and Pediatric Sciences, University of Bologna, Bologna, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016912PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040188PMC
February 2011

Complex patterns of gene expression in human T cells during in vivo aging.

Mol Biosyst 2010 Oct 5;6(10):1983-92. Epub 2010 Aug 5.

Department of Physics, University of Bologna, Viale Berti Pichat 6/2, 40127 Bologna, Italy.

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http://dx.doi.org/10.1039/c004635cDOI Listing
October 2010

Network, degeneracy and bow tie. Integrating paradigms and architectures to grasp the complexity of the immune system.

Theor Biol Med Model 2010 Aug 11;7:32. Epub 2010 Aug 11.

Interdept, Center Luigi Galvani for Bioinformatics, Biophysics and Biocomplexity (CIG), University of Bologna, Via F, Selmi 3, 40126 Bologna, Italy.

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http://dx.doi.org/10.1186/1742-4682-7-32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2927512PMC
August 2010

Trends in modeling Biomedical Complex Systems.

BMC Bioinformatics 2009 Oct 15;10 Suppl 12:I1. Epub 2009 Oct 15.

Institute of Biomedical Technology, National Research Council, Milan, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-S12-I1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2762057PMC
October 2009

Overcoming resistance to conventional drugs in Ewing sarcoma and identification of molecular predictors of outcome.

J Clin Oncol 2009 May 23;27(13):2209-16. Epub 2009 Mar 23.

Laboratory of Oncologic Research, Orthopaedic Institute Rizzoli, Via di Barbiano 1/10, 40136 Bologna, Italy.

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http://dx.doi.org/10.1200/JCO.2008.19.2542DOI Listing
May 2009

Functional models for large-scale gene regulation networks: realism and fiction.

Mol Biosyst 2009 Apr 30;5(4):335-44. Epub 2009 Jan 30.

Università degli Studi di Milano, Dip. Fisica. Via Celoria 16, 20133 Milano, Italy.

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http://dx.doi.org/10.1039/b816841pDOI Listing
April 2009

Genomic imbalances associated with secondary acute leukemias in Hodgkin lymphoma.

Oncol Rep 2007 Dec;18(6):1427-34

Istituto di Ematologia e Oncologia Medica Lorenzo e Ariosto Seràgnoli, Università di Bologna - Medical School, 40138 Bologna, Italy.

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December 2007

Effects of 50 Hz sinusoidal magnetic fields on Hsp27, Hsp70, Hsp90 expression in porcine aortic endothelial cells (PAEC).

Bioelectromagnetics 2007 Apr;28(3):231-7

Department of Veterinary Morphophysiology and Animal Production DIMORFIPA, Bologna University, Via Tolara di Sopra 50, 40064 Ozzano dell'Emilia, Bologna, Italy.

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http://dx.doi.org/10.1002/bem.20299DOI Listing
April 2007

Molecular classification of green tea catechin-sensitive and green tea catechin-resistant prostate cancer in the TRAMP mice model by quantitative real-time PCR gene profiling.

Carcinogenesis 2006 May 28;27(5):1047-53. Epub 2005 Nov 28.

Dipartimento di Medicina Sperimentale, Plesso Biotecnologico Integrato, Universita' di Parma, Via Volturno 39-43100 Parma, Italy.

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http://dx.doi.org/10.1093/carcin/bgi287DOI Listing
May 2006

Gene expression analysis of ELF-MF exposed human monocytes indicating the involvement of the alternative activation pathway.

Biochim Biophys Acta 2006 Apr 6;1763(4):402-12. Epub 2006 Apr 6.

Division of Environmental Physiology, Institute of Cell Biology and Biosystems Technology, University of Rostock, Albert-Einstein-Str. 3, D-18059 Rostock, Germany.

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http://dx.doi.org/10.1016/j.bbamcr.2006.03.003DOI Listing
April 2006

Turning on stem cell cardiogenesis with extremely low frequency magnetic fields.

FASEB J 2005 Jan 26;19(1):155-7. Epub 2004 Oct 26.

Laboratory of Molecular Biology and Stem Cell Engineering, National Institute of Biostructures and Biosystems, University of Bologna, Bologna, Italy.

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http://dx.doi.org/10.1096/fj.04-2695fjeDOI Listing
January 2005

50 Hz sinusoidal magnetic fields do not affect human lymphocyte activation and proliferation in vitro.

Phys Biol 2004 Dec;1(3-4):211-9

Department of Experimental Pathology, Via S Giacomo 12, University of Bologna, 40126 Bologna, Italy.

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http://dx.doi.org/10.1088/1478-3967/1/4/003DOI Listing
December 2004

Role of connectivity in immune and neural network models: memory development and aging.

Riv Biol 2003 May-Aug;96(2):225-39

Dipartimento di Fisica, Università di Bologna, Via Berti Pichat 6, 40127 Bologna, Italy.

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January 2004