Daniel Pinkel

Daniel Pinkel

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Daniel Pinkel

Daniel Pinkel

Publications by authors named "Daniel Pinkel"

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68Publications

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Two distinct routes to oral cancer differing in genome instability and risk for cervical node metastasis.

Clin Cancer Res 2011 Nov 8;17(22):7024-34. Epub 2011 Nov 8.

Helen Diller Family Comprehensive Cancer Center, University of California San Francisco, San Francisco, California 94158, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-11-1944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226754PMC
November 2011

Expanding the genetic spectrum of pigmentation.

Pigment Cell Melanoma Res 2008 Oct 20;21(5):507-8. Epub 2007 Aug 20.

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http://dx.doi.org/10.1111/j.1755-148X.2008.00490.xDOI Listing
October 2008

High-efficiency microarray printer using fused-silica capillary tube printing pins.

Anal Chem 2008 Oct 3;80(19):7639-42. Epub 2008 Sep 3.

University of California San Francisco, Box 0808, San Francisco, California 94143, USA.

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http://pubs.acs.org/doi/abs/10.1021/ac8010395
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http://dx.doi.org/10.1021/ac8010395DOI Listing
October 2008

Distribution and significance of occult intraepidermal tumor cells surrounding primary melanoma.

J Invest Dermatol 2008 Aug 6;128(8):2024-30. Epub 2008 Mar 6.

UCSF School of Medicine, University of California, San Francisco, California, USA.

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http://dx.doi.org/10.1038/jid.2008.41DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2825251PMC
August 2008

Improving melanoma classification by integrating genetic and morphologic features.

PLoS Med 2008 Jun;5(6):e120

Department of Dermatology, University of California San Francisco, San Francisco, California, United States of America.

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https://dx.plos.org/10.1371/journal.pmed.0050120
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http://dx.doi.org/10.1371/journal.pmed.0050120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2408611PMC
June 2008

Genome position and gene amplification.

Genome Biol 2007 ;8(6):R120

Cancer Research Institute, University of California San Francisco, San Francisco, CA 94143-0808, USA.

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http://dx.doi.org/10.1186/gb-2007-8-6-r120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2394771PMC
February 2008

Absence of PDGFRA mutations in primary melanoma.

J Invest Dermatol 2008 Feb 30;128(2):488-9. Epub 2007 Aug 30.

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http://dx.doi.org/10.1038/sj.jid.5701036DOI Listing
February 2008

Analytical description of mutational effects in competing asexual populations.

Authors:
Daniel Pinkel

Genetics 2007 Dec 18;177(4):2135-49. Epub 2007 Oct 18.

Comprehensive Cancer Center and Department of Laboratory Medicine, University of California, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1534/genetics.107.075697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2219475PMC
December 2007

Roadmap for new opportunities in melanoma research.

Semin Oncol 2007 Dec;34(6):566-76

Molecular and Cellular Oncogenesis, The Wistar Institute, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1053/j.seminoncol.2007.09.004DOI Listing
December 2007

Chromosomal aberrations in angioimmunoblastic T-cell lymphoma and peripheral T-cell lymphoma unspecified: A matrix-based CGH approach.

Genes Chromosomes Cancer 2007 Jan;46(1):37-44

Department of Pathology, German Consultation and Reference Center for Lymphomas, University Clinic Schleswig-Holstein, Campus Luebeck, Luebeck, Germany.

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http://dx.doi.org/10.1002/gcc.20386DOI Listing
January 2007

Deletion of chromosome 11q predicts response to anthracycline-based chemotherapy in early breast cancer.

Cancer Res 2007 Jan;67(2):818-26

Division of Oncology, Center for Applied Medical Research, University of Navarra, Pamplona, and Department of Hematology and Medical Oncology, Hospital Clinico, University of Valencia, Spain.

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http://cancerres.aacrjournals.org/cgi/doi/10.1158/0008-5472.
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http://dx.doi.org/10.1158/0008-5472.CAN-06-3307DOI Listing
January 2007

Somatic activation of KIT in distinct subtypes of melanoma.

J Clin Oncol 2006 Sep 14;24(26):4340-6. Epub 2006 Aug 14.

Comprehensive Cancer Center, University of California, San Francisco, San Francisco, CA 94143-0808, USA.

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http://dx.doi.org/10.1200/JCO.2006.06.2984DOI Listing
September 2006

MC1R germline variants confer risk for BRAF-mutant melanoma.

Science 2006 Jul 29;313(5786):521-2. Epub 2006 Jun 29.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1126/science.1127515DOI Listing
July 2006

Clinical cytogenetics and molecular cytogenetics.

J Zhejiang Univ Sci B 2006 Feb;7(2):162-3

Medical School, Tulane University, New Orleans, LA 70112-2699, USA.

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http://dx.doi.org/10.1631/jzus.2006.B0162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1363764PMC
February 2006

Ring chromosome 15: characterization by array CGH.

Hum Genet 2006 Jan 3;118(5):611-7. Epub 2005 Nov 3.

Department of Pediatrics, University of Washington, M2-9, 4800 Sand Point Way NE, Seattle, 98105, USA.

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http://link.springer.com/10.1007/s00439-005-0030-z
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http://dx.doi.org/10.1007/s00439-005-0030-zDOI Listing
January 2006

Duplication of distal 20q: clinical, cytogenetic and array CGH. Characterization of a new case.

Clin Dysmorphol 2006 Jan;15(1):19-23

Division of Genetics, Department of Pediatrics, Beth Israel Medical Center, New York, and Division of Medical Genetics, Department of Pediatrics, Division of Medical Genetics, University of California, San Francisco, USA.

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January 2006

Comparative genomic hybridization.

Annu Rev Genomics Hum Genet 2005 ;6:331-54

Comprehensive Cancer Center, Department of Laboratory Medicine, University of California, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1146/annurev.genom.6.080604.162140DOI Listing
December 2005

Interstitial deletion of chromosome 12q: genotype-phenotype correlation of two patients utilizing array comparative genomic hybridization.

Am J Med Genet A 2005 Nov;138(4):349-54

Department of Pediatrics, Division of Medical Genetics, University of California San Francisco, San Francisco, California 94115, USA.

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http://dx.doi.org/10.1002/ajmg.a.30867DOI Listing
November 2005

Fine-scale structural variation of the human genome.

Nat Genet 2005 Jul 15;37(7):727-32. Epub 2005 May 15.

Department of Genome Sciences, University of Washington School of Medicine, 1705 NE Pacific Street, Seattle, Washington 98195, USA.

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http://bioinfo.mc.vanderbilt.edu/journal_club2006/2005/05-11
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http://www.nature.com/doifinder/10.1038/ng1562
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http://dx.doi.org/10.1038/ng1562DOI Listing
July 2005

Rare amplicons implicate frequent deregulation of cell fate specification pathways in oral squamous cell carcinoma.

Oncogene 2005 Jun;24(26):4232-42

Cancer Research Institute, University of California San Francisco, Box 0808, San Francisco, CA 94143-0808, USA.

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http://www.nature.com/articles/1208601
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http://dx.doi.org/10.1038/sj.onc.1208601DOI Listing
June 2005

Xq chromosome duplication in males: clinical, cytogenetic and array CGH characterization of a new case and review.

Am J Med Genet A 2005 Jun;135(3):308-13

Department of Pediatrics, Division of Medical Genetics, University of California San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1002/ajmg.a.30613DOI Listing
June 2005

Epigenome analyses using BAC microarrays identify evolutionary conservation of tissue-specific methylation of SHANK3.

Nat Genet 2005 Jun 15;37(6):645-51. Epub 2005 May 15.

The Brain Tumor Research Center, Department of Neurological Surgery and the Biomedical Sciences Program, University of California San Francisco, San Franciso, California 94143, USA.

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http://dx.doi.org/10.1038/ng1563DOI Listing
June 2005

Array comparative genomic hybridization and its applications in cancer.

Nat Genet 2005 Jun;37 Suppl:S11-7

Department of Laboratory Medicine and Comprehensive Cancer Center, University of California San Francisco, Box 0808, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1038/ng1569DOI Listing
June 2005

Array comparative genomic hybridization identifies genetic subgroups in grade 4 human astrocytoma.

Clin Cancer Res 2005 Apr;11(8):2907-18

Brain Tumor Research Center, Department of Neurosurgery, University of California San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-04-0708DOI Listing
April 2005

BAC microarray-based comparative genomic hybridization.

Methods Mol Biol 2004 ;256:39-56

Comprehensive Cancer Center, University of California, San Francisco, USA.

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http://dx.doi.org/10.1385/1-59259-753-X:039DOI Listing
May 2004

A tiling resolution DNA microarray with complete coverage of the human genome.

Nat Genet 2004 Mar 15;36(3):299-303. Epub 2004 Feb 15.

British Columbia Cancer Research Centre, 601 West 10th Avenue, Vancouver, British Columbia V5Z 1L3, Canada.

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http://dx.doi.org/10.1038/ng1307DOI Listing
March 2004

Classifying melanocytic tumors based on DNA copy number changes.

Am J Pathol 2003 Nov;163(5):1765-70

Departments of Pathology and Dermatology, Dermatopathology Section, University of California-San Francisco, San Francisco, CA 94143-0808, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1892437PMC
http://dx.doi.org/10.1016/S0002-9440(10)63536-5DOI Listing
November 2003

Genomic microarrays in human genetic disease and cancer.

Hum Mol Genet 2003 Oct 5;12 Spec No 2:R145-52. Epub 2003 Aug 5.

Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA 94143-0808,USA.

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http://dx.doi.org/10.1093/hmg/ddg261DOI Listing
October 2003

Ring 21 chromosome and a satellited 1p in the same patient: novel origin for an ectopic NOR.

Am J Med Genet A 2003 Jul;120A(3):365-9

Division of Medical Genetics and Department of Pathology, Children's Hospital and Research Center, Oakland, California, USA.

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http://dx.doi.org/10.1002/ajmg.a.20236DOI Listing
July 2003

Shaping of tumor and drug-resistant genomes by instability and selection.

Oncogene 2003 Jul;22(28):4370-9

Cancer Research Institute, University of California San Francisco, San Francisco, CA 94143-0808, USA.

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http://dx.doi.org/10.1038/sj.onc.1206482DOI Listing
July 2003

Current status and future prospects of array-based comparative genomic hybridisation.

Brief Funct Genomic Proteomic 2003 Apr;2(1):37-45

University of California Comprehensive Cancer Center, USA.

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http://dx.doi.org/10.1093/bfgp/2.1.37DOI Listing
April 2003

Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization.

Genome Res 2003 Mar;13(3):347-57

Department of Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA.

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http://dx.doi.org/10.1101/gr.1003303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC430292PMC
March 2003

Genomic profiling of gastric cancer predicts lymph node status and survival.

Oncogene 2003 Mar;22(12):1872-9

Department of Gastroenterology, VU University Medical Centre, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1038/sj.onc.1206350DOI Listing
March 2003

High-resolution genomic profiling of occult micrometastatic tumor cells.

Genes Chromosomes Cancer 2003 Feb;36(2):159-66

Institut für Humangenetik, Technische Universität München, Munich, Germany.

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http://dx.doi.org/10.1002/gcc.10160DOI Listing
February 2003

Integrated genomic and epigenomic analyses pinpoint biallelic gene inactivation in tumors.

Nat Genet 2002 Nov 30;32(3):453-8. Epub 2002 Sep 30.

Comprehensive Cancer Center, University of California, San Francisco, San Francisco, California 94115, USA.

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http://dx.doi.org/10.1038/ng1007DOI Listing
November 2002

Additional patient with del(12)(q21.2q22): further evidence for a candidate region for cardio-facio-cutaneous syndrome?

Am J Med Genet 2002 Jun;110(1):51-6

Division of Medical Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1002/ajmg.10478DOI Listing
June 2002

Fully automatic quantification of microarray image data.

Genome Res 2002 Feb;12(2):325-32

Comprehensive Cancer Center, University of California, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1101/gr.210902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC155276PMC
February 2002