Publications by authors named "Daniel Marbach"

19 Publications

  • Page 1 of 1

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases.

Nat Methods 2016 Apr 7;13(4):366-70. Epub 2016 Mar 7.

Department of Computational Biology, University of Lausanne, Lausanne, Switzerland.

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April 2016

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.

PLoS Comput Biol 2016 Jan 25;12(1):e1004714. Epub 2016 Jan 25.

Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland.

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January 2016

Network deconvolution as a general method to distinguish direct dependencies in networks.

Nat Biotechnol 2013 Aug 14;31(8):726-33. Epub 2013 Jul 14.

Computer Science and Artificial Intelligence Laboratory (CSAIL), Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts, USA.

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August 2013

Wisdom of crowds for robust gene network inference.

Nat Methods 2012 Jul 15;9(8):796-804. Epub 2012 Jul 15.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

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July 2012

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Genome Res 2012 Jul 28;22(7):1334-49. Epub 2012 Mar 28.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

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July 2012

GeneNetWeaver: in silico benchmark generation and performance profiling of network inference methods.

Bioinformatics 2011 Aug 22;27(16):2263-70. Epub 2011 Jun 22.

Laboratory of Intelligent Systems, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

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August 2011

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Science 2010 Dec 22;330(6012):1787-97. Epub 2010 Dec 22.

Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology (MIT), Cambridge, MA 02139, USA.

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December 2010

Revealing strengths and weaknesses of methods for gene network inference.

Proc Natl Acad Sci U S A 2010 Apr 22;107(14):6286-91. Epub 2010 Mar 22.

Laboratory of Intelligent Systems, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland.

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April 2010

Replaying the evolutionary tape: biomimetic reverse engineering of gene networks.

Ann N Y Acad Sci 2009 Mar;1158:234-45

Laboratory of Intelligent Systems, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

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March 2009

Combining multiple results of a reverse-engineering algorithm: application to the DREAM five-gene network challenge.

Ann N Y Acad Sci 2009 Mar;1158:102-13

Laboratory of Intelligent Systems, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

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March 2009

Generating realistic in silico gene networks for performance assessment of reverse engineering methods.

J Comput Biol 2009 Feb;16(2):229-39

Ecole Polytechnique Fédérale de Lausanne (EPFL), Laboratory of Intelligent Systems, Lausanne, Switzerland.

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February 2009