Publications by authors named "Daniel M Gatti"

54Publications

Nine quick tips for efficient bioinformatics curriculum development and training.

PLoS Comput Biol 2020 07 23;16(7):e1008007. Epub 2020 Jul 23.

The Jackson Laboratory, Bar Harbor, Maine, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1008007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377369PMC
July 2020

Nitrosative Stress and Lipid Homeostasis as a Mechanism for Zileuton Hepatotoxicity and Resistance in Genetically Sensitive Mice.

Toxicol Sci 2020 06;175(2):220-235

Division of the National Toxicology Program, The National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709.

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http://dx.doi.org/10.1093/toxsci/kfaa037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7253212PMC
June 2020

Cleaning Genotype Data from Diversity Outbred Mice.

G3 (Bethesda) 2019 05 7;9(5):1571-1579. Epub 2019 May 7.

The Jackson Laboratory, Bar Harbor, Maine 04609.

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http://dx.doi.org/10.1534/g3.119.400165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505173PMC
May 2019

Correction to: Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size.

Mamm Genome 2019 02;30(1-2):42

Division of Cardiology, Department of Medicine, University of North Carolina, 6012 Burnett-Womack Building, Chapel Hill, NC, 27599, USA.

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http://dx.doi.org/10.1007/s00335-018-9789-9DOI Listing
February 2019

Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size.

Mamm Genome 2018 02 26;29(1-2):80-89. Epub 2017 Dec 26.

Division of Cardiology, Department of Medicine, University of North Carolina, 6012 Burnett-Womack Building, Chapel Hill, NC, 27599, USA.

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http://dx.doi.org/10.1007/s00335-017-9730-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6340297PMC
February 2018

CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.

Bioinformatics 2017 Oct;33(19):3110-3112

The Jackson Laboratory for Genomic Medicine, Farmington, CT 06030, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870764PMC
October 2017

Block network mapping approach to quantitative trait locus analysis.

BMC Bioinformatics 2016 Dec 22;17(1):544. Epub 2016 Dec 22.

Laboratory of Biological Modeling, NIDDK, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1186/s12859-016-1351-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5178092PMC
December 2016

A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.

PLoS Genet 2015 Feb 13;11(2):e1004850. Epub 2015 Feb 13.

Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America; Carolina Center for Genome Science, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.

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https://dx.plos.org/10.1371/journal.pgen.1004850
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http://dx.doi.org/10.1371/journal.pgen.1004850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4334553PMC
February 2015

Diet dominates host genotype in shaping the murine gut microbiota.

Cell Host Microbe 2015 Jan 18;17(1):72-84. Epub 2014 Dec 18.

FAS Center for Systems Biology, Harvard University, 52 Oxford Street, Cambridge, MA 02138, USA; Department of Microbiology and Immunology, Hooper Foundation, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S19313128140042
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http://dx.doi.org/10.1016/j.chom.2014.11.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4297240PMC
January 2015

Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity.

Environ Health Perspect 2015 Mar 6;123(3):237-45. Epub 2014 Nov 6.

Division of the National Toxicology Program, National Institute of Environmental Health Sciences (NIEHS), National Institutes of Health (NIH), Department of Health and Human Resources (DHHS), Research Triangle Park, North Carolina, USA.

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http://dx.doi.org/10.1289/ehp.1408202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4348743PMC
March 2015

High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis.

G3 (Bethesda) 2014 Oct 23;4(12):2353-63. Epub 2014 Oct 23.

Department of Genetics, University of North Carolina Chapel Hill, North Carolina 27599 Nutrition Research Institute, University of North Carolina Kannapolis, North Carolina 28081 Department of Nutrition, University of North Carolina Chapel Hill, North Carolina 27599

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http://g3journal.org/lookup/doi/10.1534/g3.114.014704
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http://dx.doi.org/10.1534/g3.114.014704DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4267931PMC
October 2014

Rapid identification of major-effect genes using the collaborative cross.

Genetics 2014 Sep;198(1):75-86

Centre for Diabetes Research, Harry Perkins Institute of Medical Research, Nedlands 6009, WA, Australia Centre of Medical Research, University of Western Australia, Nedlands 6009, WA, Australia

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http://dx.doi.org/10.1534/genetics.114.163014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174955PMC
September 2014

Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene.

Mamm Genome 2014 Jun 5;25(5-6):211-22. Epub 2014 Apr 5.

IGERT Program in Functional Genomics, Graduate School of Biomedical Sciences and Engineering, The University of Maine, Orono, ME, 04469, USA,

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http://dx.doi.org/10.1007/s00335-014-9508-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4032469PMC
June 2014

The Diversity Outbred mouse population.

Mamm Genome 2012 Oct 15;23(9-10):713-8. Epub 2012 Aug 15.

The Jackson Laboratory, 600 Main Street, Bar Harbor, ME 04609, USA.

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http://dx.doi.org/10.1007/s00335-012-9414-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3524832PMC
October 2012

MicroRNA expression in the livers of inbred mice.

Mutat Res 2011 Sep 14;714(1-2):126-33. Epub 2011 May 14.

Department of Environmental Sciences & Engineering, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S002751071100116
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http://dx.doi.org/10.1016/j.mrfmmm.2011.05.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166582PMC
September 2011

Heading down the wrong pathway: on the influence of correlation within gene sets.

BMC Genomics 2010 Oct 18;11:574. Epub 2010 Oct 18.

Department of Environmental Sciences & Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1186/1471-2164-11-574DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091509PMC
October 2010

Toxicogenetics: population-based testing of drug and chemical safety in mouse models.

Pharmacogenomics 2010 Aug;11(8):1127-36

Department of Environmental Sciences & Engineering, 0031 Michael Hooker Research Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.2217/pgs.10.100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035927PMC
August 2010

Sex-specific gene expression in the BXD mouse liver.

Physiol Genomics 2010 Aug 15;42(3):456-68. Epub 2010 Jun 15.

Department of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1152/physiolgenomics.00110.2009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929887PMC
August 2010

Replication and narrowing of gene expression quantitative trait loci using inbred mice.

Mamm Genome 2009 Jul 17;20(7):437-46. Epub 2009 Jul 17.

Department of Environmental Sciences & Engineering, University of North Carolina, CB 7431, Chapel Hill, NC 27599, USA.

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http://link.springer.com/10.1007/s00335-009-9199-0
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http://dx.doi.org/10.1007/s00335-009-9199-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745627PMC
July 2009

Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel.

Toxicol Sci 2009 Jul 6;110(1):235-43. Epub 2009 May 6.

Department of Environmental Sciences and Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1093/toxsci/kfp096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2696330PMC
July 2009

Time-course comparison of xenobiotic activators of CAR and PPARalpha in mouse liver.

Toxicol Appl Pharmacol 2009 Mar 24;235(2):199-207. Epub 2008 Dec 24.

Department of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, NC 27599-7431, USA.

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http://dx.doi.org/10.1016/j.taap.2008.12.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2654411PMC
March 2009

SAFEGUI: resampling-based tests of categorical significance in gene expression data made easy.

Bioinformatics 2009 Feb 19;25(4):541-2. Epub 2008 Dec 19.

Department of Environmental Sciences & Engineering, Department of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btn655DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642635PMC
February 2009

FastMap: fast eQTL mapping in homozygous populations.

Bioinformatics 2009 Feb 17;25(4):482-9. Epub 2008 Dec 17.

Department of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn648DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642639PMC
February 2009