Daniel J Weisenberger

Daniel J Weisenberger

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Daniel J Weisenberger

Publications by authors named "Daniel J Weisenberger"

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Aberrant DNA methylation of miRNAs in Fuchs endothelial corneal dystrophy.

Sci Rep 2019 Nov 8;9(1):16385. Epub 2019 Nov 8.

Department of Ophthalmology, University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1038/s41598-019-52727-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6841734PMC
November 2019

Impact of polymorphisms within genes involved in regulating DNA methylation in patients with metastatic colorectal cancer enrolled in three independent, randomised, open-label clinical trials: a meta-analysis from TRIBE, MAVERICC and FIRE-3.

Eur J Cancer 2019 Apr 7;111:138-147. Epub 2019 Mar 7.

Division of Medical Oncology, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA; Department of Preventive Medicine, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ejca.2019.01.105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436973PMC
April 2019

The Roles of Human DNA Methyltransferases and Their Isoforms in Shaping the Epigenome.

Genes (Basel) 2019 02 23;10(2). Epub 2019 Feb 23.

Department of Urology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.

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http://dx.doi.org/10.3390/genes10020172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6409524PMC
February 2019

MethyLight and Digital MethyLight.

Methods Mol Biol 2018 ;1708:497-513

Van Andel Research Institute, Center for Epigenetics, Room 5006W, 333 Bostwick Ave., N.E., Grand Rapids, MI, 49503, USA.

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http://dx.doi.org/10.1007/978-1-4939-7481-8_25DOI Listing
July 2018

DNA methylation loss in late-replicating domains is linked to mitotic cell division.

Nat Genet 2018 04 2;50(4):591-602. Epub 2018 Apr 2.

Center for Bioinformatics and Functional Genomics, Cedars-Sinai Medical Center, Los Angeles, CA, USA.

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http://dx.doi.org/10.1038/s41588-018-0073-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5893360PMC
April 2018

DNA methylation aberrancies as a guide for surveillance and treatment of human cancers.

Epigenetics 2017 06 30;12(6):416-432. Epub 2017 Mar 30.

b Department of Biochemistry and Molecular Medicine , University of Southern California, USC Norris Comprehensive Cancer Center , Los Angeles , CA , USA.

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http://dx.doi.org/10.1080/15592294.2017.1311434DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5501209PMC
June 2017

A Clinically Distinct and 'Atypical' Subgroup of Head and Neck Cancers Positive for a CpG Island Methylator Phenotype.

EBioMedicine 2017 03 6;17:22-23. Epub 2017 Mar 6.

University of Southern California, USC Norris Comprehensive Cancer Center, Department of Biochemistry and Molecular Medicine, 1450 Biggy St., NRT G511D, Los Angeles, CA 90033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2017.03.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5360595PMC
March 2017

Improving needle biopsy accuracy in small renal mass using tumor-specific DNA methylation markers.

Oncotarget 2017 Jan;8(3):5439-5448

Department of Preventive Medicine, Norris Comprehensive Cancer Center, USC Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.

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http://dx.doi.org/10.18632/oncotarget.12276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5354921PMC
January 2017

Genetic and Epigenetic Alterations in Bladder Cancer.

Int Neurourol J 2016 Nov 22;20(Suppl 2):S84-94. Epub 2016 Nov 22.

Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA.

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http://dx.doi.org/10.5213/inj.1632752.376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5169086PMC
November 2016

Insights into the Pathogenesis of Anaplastic Large-Cell Lymphoma through Genome-wide DNA Methylation Profiling.

Cell Rep 2016 10;17(2):596-608

Clinical Institute of Pathology, Medical University of Vienna, 1090 Vienna, Austria; European Research Initiative on ALK-Related Malignancies (ERIA), Cambridge CB2 0QQ, UK. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2016.09.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6066089PMC
October 2016

Effects of folylpolyglutamate synthase modulation on global and gene-specific DNA methylation and gene expression in human colon and breast cancer cells.

J Nutr Biochem 2016 Mar 17;29:27-35. Epub 2015 Nov 17.

Department of Nutritional Sciences, University of Toronto, Toronto, ON, Canada M5S 1A8; Keenan Research Centre for Biomedical Science of St. Michael's Hospital, Toronto, ON, Canada M5B 1T8; Department of Medicine, University of Toronto, Toronto, ON, Canada M5S 1A8; Division of Gastroenterology, St. Michael's Hospital, Toronto, ON, Canada M5B 1W8.

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https://linkinghub.elsevier.com/retrieve/pii/S09552863150033
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http://dx.doi.org/10.1016/j.jnutbio.2015.10.019DOI Listing
March 2016

Clinicopathologic Risk Factor Distributions for MLH1 Promoter Region Methylation in CIMP-Positive Tumors.

Cancer Epidemiol Biomarkers Prev 2016 Jan 28;25(1):68-75. Epub 2015 Oct 28.

Department of Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center, Los Angeles, California.

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http://dx.doi.org/10.1158/1055-9965.EPI-15-0935DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4713308PMC
January 2016

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

Authors:
W Marston Linehan Paul T Spellman Christopher J Ricketts Chad J Creighton Suzanne S Fei Caleb Davis David A Wheeler Bradley A Murray Laura Schmidt Cathy D Vocke Myron Peto Abu Amar M Al Mamun Eve Shinbrot Anurag Sethi Samira Brooks W Kimryn Rathmell Angela N Brooks Katherine A Hoadley A Gordon Robertson Denise Brooks Reanne Bowlby Sara Sadeghi Hui Shen Daniel J Weisenberger Moiz Bootwalla Stephen B Baylin Peter W Laird Andrew D Cherniack Gordon Saksena Scott Haake Jun Li Han Liang Yiling Lu Gordon B Mills Rehan Akbani Mark D M Leiserson Benjamin J Raphael Pavana Anur Donald Bottaro Laurence Albiges Nandita Barnabas Toni K Choueiri Bogdan Czerniak Andrew K Godwin A Ari Hakimi Thai H Ho James Hsieh Michael Ittmann William Y Kim Bhavani Krishnan Maria J Merino Kenna R Mills Shaw Victor E Reuter Ed Reznik Carl S Shelley Brian Shuch Sabina Signoretti Ramaprasad Srinivasan Pheroze Tamboli George Thomas Satish Tickoo Kenneth Burnett Daniel Crain Johanna Gardner Kevin Lau David Mallery Scott Morris Joseph D Paulauskis Robert J Penny Candace Shelton W Troy Shelton Mark Sherman Eric Thompson Peggy Yena Melissa T Avedon Jay Bowen Julie M Gastier-Foster Mark Gerken Kristen M Leraas Tara M Lichtenberg Nilsa C Ramirez Tracie Santos Lisa Wise Erik Zmuda John A Demchok Ina Felau Carolyn M Hutter Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean C Zenklusen Jiashan Zhang Brenda Ayala Julien Baboud Sudha Chudamani Jia Liu Laxmi Lolla Rashi Naresh Todd Pihl Qiang Sun Yunhu Wan Ye Wu Adrian Ally Miruna Balasundaram Saianand Balu Rameen Beroukhim Tom Bodenheimer Christian Buhay Yaron S N Butterfield Rebecca Carlsen Scott L Carter Hsu Chao Eric Chuah Amanda Clarke Kyle R Covington Mahmoud Dahdouli Ninad Dewal Noreen Dhalla Harsha V Doddapaneni Jennifer A Drummond Stacey B Gabriel Richard A Gibbs Ranabir Guin Walker Hale Alicia Hawes D Neil Hayes Robert A Holt Alan P Hoyle Stuart R Jefferys Steven J M Jones Corbin D Jones Divya Kalra Christie Kovar Lora Lewis Jie Li Yussanne Ma Marco A Marra Michael Mayo Shaowu Meng Matthew Meyerson Piotr A Mieczkowski Richard A Moore Donna Morton Lisle E Mose Andrew J Mungall Donna Muzny Joel S Parker Charles M Perou Jeffrey Roach Jacqueline E Schein Steven E Schumacher Yan Shi Janae V Simons Payal Sipahimalani Tara Skelly Matthew G Soloway Carrie Sougnez Angela Tam Donghui Tan Nina Thiessen Umadevi Veluvolu Min Wang Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Jane Zhou Jason Bedford Fengju Chen Yao Fu Mark Gerstein David Haussler Katayoon Kasaian Phillip Lai Shiyun Ling Amie Radenbaugh David Van Den Berg John N Weinstein Jingchun Zhu Monique Albert Iakovina Alexopoulou Jeremiah J Andersen J Todd Auman John Bartlett Sheldon Bastacky Julie Bergsten Michael L Blute Lori Boice Roni J Bollag Jeff Boyd Erik Castle Ying-Bei Chen John C Cheville Erin Curley Benjamin Davies April DeVolk Rajiv Dhir Laura Dike John Eckman Jay Engel Jodi Harr Ronald Hrebinko Mei Huang Lori Huelsenbeck-Dill Mary Iacocca Bruce Jacobs Michael Lobis Jodi K Maranchie Scott McMeekin Jerome Myers Joel Nelson Jeremy Parfitt Anil Parwani Nicholas Petrelli Brenda Rabeno Somak Roy Andrew L Salner Joel Slaton Melissa Stanton R Houston Thompson Leigh Thorne Kelinda Tucker Paul M Weinberger Cynthia Winemiller Leigh Anne Zach Rosemary Zuna

Promoter Methylation Analysis Reveals That KCNA5 Ion Channel Silencing Supports Ewing Sarcoma Cell Proliferation.

Mol Cancer Res 2016 Jan 16;14(1):26-34. Epub 2015 Nov 16.

Translational Oncology Program, University of Michigan, Ann Arbor, Michigan. Department of Pediatrics, University of Michigan, Ann Arbor, Michigan. Department of Pathology, University of Michigan, Ann Arbor, Michigan.

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http://dx.doi.org/10.1158/1541-7786.MCR-15-0343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4716008PMC
January 2016

Tumor Budding in Colorectal Carcinoma: Confirmation of Prognostic Significance and Histologic Cutoff in a Population-based Cohort.

Am J Surg Pathol 2015 Oct;39(10):1340-6

*Division of Anatomic Pathology †Department of Health Sciences Research ‡Division of Experimental Pathology #Division of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN §Van Andel Research Institute, Grand Rapids, MI ∥University of Southern California, USC/Norris Comprehensive Cancer Center, Los Angeles, CA ¶Department of Epidemiology, The University of Iowa, Iowa City, IA.

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http://dx.doi.org/10.1097/PAS.0000000000000504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567920PMC
October 2015

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.

Authors:
Daniel J Brat Roel G W Verhaak Kenneth D Aldape W K Alfred Yung Sofie R Salama Lee A D Cooper Esther Rheinbay C Ryan Miller Mark Vitucci Olena Morozova A Gordon Robertson Houtan Noushmehr Peter W Laird Andrew D Cherniack Rehan Akbani Jason T Huse Giovanni Ciriello Laila M Poisson Jill S Barnholtz-Sloan Mitchel S Berger Cameron Brennan Rivka R Colen Howard Colman Adam E Flanders Caterina Giannini Mia Grifford Antonio Iavarone Rajan Jain Isaac Joseph Jaegil Kim Katayoon Kasaian Tom Mikkelsen Bradley A Murray Brian Patrick O'Neill Lior Pachter Donald W Parsons Carrie Sougnez Erik P Sulman Scott R Vandenberg Erwin G Van Meir Andreas von Deimling Hailei Zhang Daniel Crain Kevin Lau David Mallery Scott Morris Joseph Paulauskis Robert Penny Troy Shelton Mark Sherman Peggy Yena Aaron Black Jay Bowen Katie Dicostanzo Julie Gastier-Foster Kristen M Leraas Tara M Lichtenberg Christopher R Pierson Nilsa C Ramirez Cynthia Taylor Stephanie Weaver Lisa Wise Erik Zmuda Tanja Davidsen John A Demchok Greg Eley Martin L Ferguson Carolyn M Hutter Kenna R Mills Shaw Bradley A Ozenberger Margi Sheth Heidi J Sofia Roy Tarnuzzer Zhining Wang Liming Yang Jean Claude Zenklusen Brenda Ayala Julien Baboud Sudha Chudamani Mark A Jensen Jia Liu Todd Pihl Rohini Raman Yunhu Wan Ye Wu Adrian Ally J Todd Auman Miruna Balasundaram Saianand Balu Stephen B Baylin Rameen Beroukhim Moiz S Bootwalla Reanne Bowlby Christopher A Bristow Denise Brooks Yaron Butterfield Rebecca Carlsen Scott Carter Lynda Chin Andy Chu Eric Chuah Kristian Cibulskis Amanda Clarke Simon G Coetzee Noreen Dhalla Tim Fennell Sheila Fisher Stacey Gabriel Gad Getz Richard Gibbs Ranabir Guin Angela Hadjipanayis D Neil Hayes Toshinori Hinoue Katherine Hoadley Robert A Holt Alan P Hoyle Stuart R Jefferys Steven Jones Corbin D Jones Raju Kucherlapati Phillip H Lai Eric Lander Semin Lee Lee Lichtenstein Yussanne Ma Dennis T Maglinte Harshad S Mahadeshwar Marco A Marra Michael Mayo Shaowu Meng Matthew L Meyerson Piotr A Mieczkowski Richard A Moore Lisle E Mose Andrew J Mungall Angeliki Pantazi Michael Parfenov Peter J Park Joel S Parker Charles M Perou Alexei Protopopov Xiaojia Ren Jeffrey Roach Thaís S Sabedot Jacqueline Schein Steven E Schumacher Jonathan G Seidman Sahil Seth Hui Shen Janae V Simons Payal Sipahimalani Matthew G Soloway Xingzhi Song Huandong Sun Barbara Tabak Angela Tam Donghui Tan Jiabin Tang Nina Thiessen Timothy Triche David J Van Den Berg Umadevi Veluvolu Scot Waring Daniel J Weisenberger Matthew D Wilkerson Tina Wong Junyuan Wu Liu Xi Andrew W Xu Lixing Yang Travis I Zack Jianhua Zhang B Arman Aksoy Harindra Arachchi Chris Benz Brady Bernard Daniel Carlin Juok Cho Daniel DiCara Scott Frazer Gregory N Fuller JianJiong Gao Nils Gehlenborg David Haussler David I Heiman Lisa Iype Anders Jacobsen Zhenlin Ju Sol Katzman Hoon Kim Theo Knijnenburg Richard Bailey Kreisberg Michael S Lawrence William Lee Kalle Leinonen Pei Lin Shiyun Ling Wenbin Liu Yingchun Liu Yuexin Liu Yiling Lu Gordon Mills Sam Ng Michael S Noble Evan Paull Arvind Rao Sheila Reynolds Gordon Saksena Zack Sanborn Chris Sander Nikolaus Schultz Yasin Senbabaoglu Ronglai Shen Ilya Shmulevich Rileen Sinha Josh Stuart S Onur Sumer Yichao Sun Natalie Tasman Barry S Taylor Doug Voet Nils Weinhold John N Weinstein Da Yang Kosuke Yoshihara Siyuan Zheng Wei Zhang Lihua Zou Ty Abel Sara Sadeghi Mark L Cohen Jenny Eschbacher Eyas M Hattab Aditya Raghunathan Matthew J Schniederjan Dina Aziz Gene Barnett Wendi Barrett Darell D Bigner Lori Boice Cathy Brewer Chiara Calatozzolo Benito Campos Carlos Gilberto Carlotti Timothy A Chan Lucia Cuppini Erin Curley Stefania Cuzzubbo Karen Devine Francesco DiMeco Rebecca Duell J Bradley Elder Ashley Fehrenbach Gaetano Finocchiaro William Friedman Jordonna Fulop Johanna Gardner Beth Hermes Christel Herold-Mende Christine Jungk Ady Kendler Norman L Lehman Eric Lipp Ouida Liu Randy Mandt Mary McGraw Roger Mclendon Christopher McPherson Luciano Neder Phuong Nguyen Ardene Noss Raffaele Nunziata Quinn T Ostrom Cheryl Palmer Alessandro Perin Bianca Pollo Alexander Potapov Olga Potapova W Kimryn Rathmell Daniil Rotin Lisa Scarpace Cathy Schilero Kelly Senecal Kristen Shimmel Vsevolod Shurkhay Suzanne Sifri Rosy Singh Andrew E Sloan Kathy Smolenski Susan M Staugaitis Ruth Steele Leigh Thorne Daniela P C Tirapelli Andreas Unterberg Mahitha Vallurupalli Yun Wang Ronald Warnick Felicia Williams Yingli Wolinsky Sue Bell Mara Rosenberg Chip Stewart Franklin Huang Jonna L Grimsby Amie J Radenbaugh Jianan Zhang
June 2015

Association between molecular subtypes of colorectal cancer and patient survival.

Gastroenterology 2015 Jan 30;148(1):77-87.e2. Epub 2014 Sep 30.

Epidemiology Department, University of Washington, Seattle, Washington; Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington.

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http://dx.doi.org/10.1053/j.gastro.2014.09.038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4274235PMC
January 2015

A pilot genome-scale profiling of DNA methylation in sporadic pituitary macroadenomas: association with tumor invasion and histopathological subtype.

PLoS One 2014 29;9(4):e96178. Epub 2014 Apr 29.

Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America; Department of Neurosurgery, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0096178PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4004564PMC
November 2014

Genomic and transcriptome analysis revealing an oncogenic functional module in meningiomas.

Neurosurg Focus 2013 Dec;35(6):E3

Zilkha Neurogenetic Institute, Keck School of Medicine, University of Southern California, Los Angeles, California;

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https://thejns.org/view/journals/neurosurg-focus/35/6/articl
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http://dx.doi.org/10.3171/2013.10.FOCUS13326DOI Listing
December 2013

The somatic genomic landscape of glioblastoma.

Cell 2013 Oct;155(2):462-77

Human Oncology and Pathogenesis Program, Brain Tumor Center, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Neurosurgery, Memorial Sloan-Kettering Cancer Center, Department of Neurological Surgery, Weill Cornell Medical Center, New York, NY 10065, USA. Electronic address:

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https://www.genome.gov/Multimedia/Slides/TCGA2/27_Verhaak.pd
Web Search
http://linkinghub.elsevier.com/retrieve/pii/S009286741301208
Publisher Site
http://dx.doi.org/10.1016/j.cell.2013.09.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910500PMC
October 2013

Low-level processing of Illumina Infinium DNA Methylation BeadArrays.

Nucleic Acids Res 2013 Apr 9;41(7):e90. Epub 2013 Mar 9.

Department of Preventive Medicine, USC Keck School of Medicine of USC, Los Angeles, CA 90089, USA.

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http://dx.doi.org/10.1093/nar/gkt090DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627582PMC
April 2013

3-D DNA methylation phenotypes correlate with cytotoxicity levels in prostate and liver cancer cell models.

BMC Pharmacol Toxicol 2013 Feb 11;14:11. Epub 2013 Feb 11.

Translational Cytomics Group, Department of Surgery, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA.

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http://bmcpharmacoltoxicol.biomedcentral.com/articles/10.118
Publisher Site
http://dx.doi.org/10.1186/2050-6511-14-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3598242PMC
February 2013

Genome-scale analysis of aberrant DNA methylation in colorectal cancer.

Genome Res 2012 Feb 9;22(2):271-82. Epub 2011 Jun 9.

Department of Surgery and Department of Biochemistry and Molecular Biology, University of Southern California, USC Epigenome Center, Los Angeles, California 90089-9601, USA.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.117523.110
Publisher Site
http://dx.doi.org/10.1101/gr.117523.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266034PMC
February 2012

Cancer risks for the relatives of colorectal cancer cases with a methylated MLH1 promoter region: data from the Colorectal Cancer Family Registry.

Cancer Prev Res (Phila) 2012 Feb 5;5(2):328-35. Epub 2011 Dec 5.

Department of Preventive Medicine, Genetic Epidemiology, Keck School of Medicine, University of Southern California, Los Angeles, California 90033, USA.

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http://dx.doi.org/10.1158/1940-6207.CAPR-11-0419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273599PMC
February 2012

Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage.

Authors:
Katherine Amps Peter W Andrews George Anyfantis Lyle Armstrong Stuart Avery Hossein Baharvand Julie Baker Duncan Baker Maria B Munoz Stephen Beil Nissim Benvenisty Dalit Ben-Yosef Juan-Carlos Biancotti Alexis Bosman Romulo Martin Brena Daniel Brison Gunilla Caisander María V Camarasa Jieming Chen Eric Chiao Young Min Choi Andre B H Choo Daniel Collins Alan Colman Jeremy M Crook George Q Daley Anne Dalton Paul A De Sousa Chris Denning Janet Downie Petr Dvorak Karen D Montgomery Anis Feki Angela Ford Victoria Fox Ana M Fraga Tzvia Frumkin Lin Ge Paul J Gokhale Tamar Golan-Lev Hamid Gourabi Michal Gropp Guangxiu Lu Ales Hampl Katie Harron Lyn Healy Wishva Herath Frida Holm Outi Hovatta Johan Hyllner Maneesha S Inamdar Astrid Kresentia Irwanto Tetsuya Ishii Marisa Jaconi Ying Jin Susan Kimber Sergey Kiselev Barbara B Knowles Oded Kopper Valeri Kukharenko Anver Kuliev Maria A Lagarkova Peter W Laird Majlinda Lako Andrew L Laslett Neta Lavon Dong Ryul Lee Jeoung Eun Lee Chunliang Li Linda S Lim Tenneille E Ludwig Yu Ma Edna Maltby Ileana Mateizel Yoav Mayshar Maria Mileikovsky Stephen L Minger Takamichi Miyazaki Shin Yong Moon Harry Moore Christine Mummery Andras Nagy Norio Nakatsuji Kavita Narwani Steve K W Oh Sun Kyung Oh Cia Olson Timo Otonkoski Fei Pan In-Hyun Park Steve Pells Martin F Pera Lygia V Pereira Ouyang Qi Grace Selva Raj Benjamin Reubinoff Alan Robins Paul Robson Janet Rossant Ghasem H Salekdeh Thomas C Schulz Karen Sermon Jameelah Sheik Mohamed Hui Shen Eric Sherrer Kuldip Sidhu Shirani Sivarajah Heli Skottman Claudia Spits Glyn N Stacey Raimund Strehl Nick Strelchenko Hirofumi Suemori Bowen Sun Riitta Suuronen Kazutoshi Takahashi Timo Tuuri Parvathy Venu Yuri Verlinsky Dorien Ward-van Oostwaard Daniel J Weisenberger Yue Wu Shinya Yamanaka Lorraine Young Qi Zhou

Nat Biotechnol 2011 Nov 27;29(12):1132-44. Epub 2011 Nov 27.

Centre for Stem Cell Biology, Department of Biomedical Science, The University of Sheffield, Sheffield, UK.

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http://www.nature.com/articles/nbt.2051
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http://dx.doi.org/10.1038/nbt.2051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3454460PMC
November 2011

Modeling measurement error in tumor characterization studies.

BMC Bioinformatics 2011 Jul 13;12:284. Epub 2011 Jul 13.

Department of Preventive Medicine, USC Keck School of Medicine, Los Angeles, California 90089-9176, USA.

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http://dx.doi.org/10.1186/1471-2105-12-284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3213130PMC
July 2011

Unique DNA methylation patterns distinguish noninvasive and invasive urothelial cancers and establish an epigenetic field defect in premalignant tissue.

Cancer Res 2010 Oct 14;70(20):8169-78. Epub 2010 Sep 14.

Department of Urology, USC Epigenome Center, and Department of Preventive Medicine, USC Norris Comprehensive Cancer Center, University of Southern California, Keck School of Medicine, Los Angeles, CA 90089, USA.

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http://cancerres.aacrjournals.org/content/early/2010/10/07/0
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http://cancerres.aacrjournals.org/cgi/doi/10.1158/0008-5472.
Publisher Site
http://dx.doi.org/10.1158/0008-5472.CAN-10-1335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2955801PMC
October 2010

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns.

Hum Mol Genet 2009 Dec 23;18(24):4808-17. Epub 2009 Sep 23.

Jane Anne Nohl Division of Hematology, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA.

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https://academic.oup.com/hmg/article-lookup/doi/10.1093/hmg/
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http://dx.doi.org/10.1093/hmg/ddp445DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4481584PMC
December 2009

The relationship of DNA methylation with age, gender and genotype in twins and healthy controls.

PLoS One 2009 Aug 26;4(8):e6767. Epub 2009 Aug 26.

Rudolf Magnus Institute of Neuroscience, Department of Psychiatry, University Medical Center Utrecht, Utrecht, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006767PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747671PMC
August 2009

Locking in on the human methylome.

Nat Biotechnol 2009 Apr;27(4):341-2

USC Epigenome Center, University of Southern California, Keck School of Medicine, Los Angeles, CA, USA.

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http://dx.doi.org/10.1038/nbt0409-341DOI Listing
April 2009

MethyLight.

Methods Mol Biol 2009 ;507:325-37

Department of Surgery, University of Southern California, Keck School of Medicine, Norris Comprehensive Cancer Center, Los Angeles, CA, USA.

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http://link.springer.com/10.1007/978-1-59745-522-0_23
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http://dx.doi.org/10.1007/978-1-59745-522-0_23DOI Listing
March 2009

DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight.

Nucleic Acids Res 2008 Aug 15;36(14):4689-98. Epub 2008 Jul 15.

Department of Surgery, University of Southern California/Norris Comprehensive Cancer Center, Los Angeles, CA 90033, USA.

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http://dx.doi.org/10.1093/nar/gkn455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2504308PMC
August 2008

Identification of a panel of sensitive and specific DNA methylation markers for squamous cell lung cancer.

Mol Cancer 2008 Jul 10;7:62. Epub 2008 Jul 10.

Department of Surgery, Norris Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089-9176, USA.

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http://dx.doi.org/10.1186/1476-4598-7-62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2483990PMC
July 2008

DNA methylation profiles of gastric carcinoma characterized by quantitative DNA methylation analysis.

Lab Invest 2008 Feb 24;88(2):161-70. Epub 2007 Dec 24.

Department of Pathology, Cancer Research Institute, Seoul National University College of Medicine, Seoul, Korea.

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http://dx.doi.org/10.1038/labinvest.3700707DOI Listing
February 2008

Epigenetic stem cell signature in cancer.

Nat Genet 2007 Feb 31;39(2):157-8. Epub 2006 Dec 31.

Department of Gynecological Oncology, Institute for Women's Health, University College London, London WC1E 6DH, UK.

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http://dx.doi.org/10.1038/ng1941DOI Listing
February 2007

Analysis of repetitive element DNA methylation by MethyLight.

Nucleic Acids Res 2005 2;33(21):6823-36. Epub 2005 Dec 2.

Department of Surgery, Keck School of Medicine, USC/Norris Comprehensive Cancer Center, University of Southern California Los Angeles, CA, USA.

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http://dx.doi.org/10.1093/nar/gki987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1301596PMC
December 2005

Prognostic relevance of methylation markers in patients with non-muscle invasive bladder carcinoma.

Eur J Cancer 2005 Nov 19;41(17):2769-78. Epub 2005 Oct 19.

Department of Urology, University of Southern California, 1441 Eastlake Avenue, Los Angeles, CA 90089-9176, USA.

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http://dx.doi.org/10.1016/j.ejca.2005.07.019DOI Listing
November 2005

Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level.

Nucleic Acids Res 2005 Nov 27;33(20):e176. Epub 2005 Nov 27.

Department of Urology, Biochemistry and Molecular Biology, USC/Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California Los Angeles, CA 90089-9181, USA.

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http://dx.doi.org/10.1093/nar/gni180DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1292996PMC
November 2005

Gene-specific methylation and subsequent risk of colorectal adenomas among participants of the polyp prevention trial.

Cancer Epidemiol Biomarkers Prev 2005 May;14(5):1219-23

Cancer Prevention Studies Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-04-0726DOI Listing
May 2005

Detection of methylated apoptosis-associated genes in urine sediments of bladder cancer patients.

Clin Cancer Res 2004 Nov;10(22):7457-65

Departments of Urology, Clinical Pathology, and Preventive Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, California 90089-9176, USA.

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http://dx.doi.org/10.1158/1078-0432.CCR-04-0930DOI Listing
November 2004

Preferential response of cancer cells to zebularine.

Cancer Cell 2004 Aug;6(2):151-8

USC/Norris Comprehensive Cancer Center, Departments of Urology, Biochemistry, and Molecular Biology, Keck School of Medicine, University of Southern California, 1441 Eastlake Avenue, Los Angeles, CA 90089, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153561080400209
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http://dx.doi.org/10.1016/j.ccr.2004.06.023DOI Listing
August 2004

Distinct localization of histone H3 acetylation and H3-K4 methylation to the transcription start sites in the human genome.

Proc Natl Acad Sci U S A 2004 May 3;101(19):7357-62. Epub 2004 May 3.

Department of Urology, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, 1441 Eastlake Avenue, MS 8302L, Los Angeles, CA 90089-9181.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0401866101
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http://dx.doi.org/10.1073/pnas.0401866101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC409923PMC
May 2004

Continuous zebularine treatment effectively sustains demethylation in human bladder cancer cells.

Mol Cell Biol 2004 Feb;24(3):1270-8

Department of Urology, USC/Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, California 90089-9181, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC321446PMC
http://dx.doi.org/10.1128/mcb.24.3.1270-1278.2004DOI Listing
February 2004

Role of the DNA methyltransferase variant DNMT3b3 in DNA methylation.

Mol Cancer Res 2004 Jan;2(1):62-72

Urologic Cancer Research Laboratory, Department of Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center, Keck School of Medicine, 1441 Eastlake Avenue, Los Angeles, CA 90089-9181, USA.

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January 2004

Histone H3-lysine 9 methylation is associated with aberrant gene silencing in cancer cells and is rapidly reversed by 5-aza-2'-deoxycytidine.

Cancer Res 2002 Nov;62(22):6456-61

Department of Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center and Hospital, University of Southern California, Keck School of Medicine, Los Angeles, California 90089, USA.

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November 2002

Identification and characterization of alternatively spliced variants of DNA methyltransferase 3a in mammalian cells.

Gene 2002 Sep;298(1):91-9

Urologic Cancer Research Laboratory, Department of Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center, Keck School of Medicine, 1441 Eastlake Avenue, Room 8302L, Los Angeles, CA 90089-9181, USA.

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http://dx.doi.org/10.1016/s0378-1119(02)00976-9DOI Listing
September 2002

Cell division is required for de novo methylation of CpG islands in bladder cancer cells.

Cancer Res 2002 Apr;62(8):2378-84

Urologic Cancer Research Laboratory, Department of Biochemistry and Molecular Biology, University of Southern California/Norris Comprehensive Cancer Center, 1441 Eastlake Avenue, Los Angeles, CA 90089-9181, USA.

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April 2002