Daniel G Peterson

Daniel G Peterson

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Daniel G Peterson

Daniel G Peterson

Publications by authors named "Daniel G Peterson"

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Genome Sequence Assemblies of and .

G3 (Bethesda) 2019 Oct 7;9(10):3079-3085. Epub 2019 Oct 7.

Ecology, Evolution, and Organismal Biology Dept., Iowa State University, Ames, IA 50010.

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http://dx.doi.org/10.1534/g3.119.400392DOI Listing
October 2019

Evaluation of the MA-10 cell line as a model of insl3 regulation and Leydig cell function.

Anim Reprod Sci 2019 Sep 28;208:106116. Epub 2019 Jun 28.

Animal Sciences Department, California Polytechnic State University, 1 Grand Ave, San Luis Obispo, CA 93407 United States. Electronic address:

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http://dx.doi.org/10.1016/j.anireprosci.2019.106116DOI Listing
September 2019

Development of a qPCR Protocol to Detect the Cotton Bacterial Blight Pathogen, Xanthomonas citri pv. malvacearum, from Cotton Leaves and Seeds.

Plant Dis 2019 Mar 11;103(3):422-429. Epub 2019 Jan 11.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS, U.S.A.

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http://dx.doi.org/10.1094/PDIS-07-18-1150-REDOI Listing
March 2019

A genomic resource for the sedentary semi-endoparasitic reniform nematode, Linford & Oliveira.

J Nematol 2019 ;51:1-2

Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University , Starkville, MS 39759 ; USDA-ARS, Crop Science Research Laboratory , Mississippi State, Starkville, MS 39759.

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http://dx.doi.org/10.21307/jofnem-2019-013DOI Listing
January 2019

Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis.

Gene 2018 Jul 12;663:165-177. Epub 2018 Apr 12.

Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA; Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2018.04.024DOI Listing
July 2018

Quack: A quality assurance tool for high throughput sequence data.

Anal Biochem 2018 05 1;548:38-43. Epub 2018 Feb 1.

Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ab.2018.01.028DOI Listing
May 2018

Transcriptomic changes in Echinochloa colona in response to treatment with the herbicide imazamox.

Planta 2018 Feb 11;247(2):369-379. Epub 2017 Oct 11.

Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, 39762, USA.

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http://dx.doi.org/10.1007/s00425-017-2784-7DOI Listing
February 2018

Five life stage-specific transcriptome assemblies for the reniform nematode, Linford & Oliveira.

J Nematol 2018 ;50(4):1-2

Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University , MS , USA ; USDA-ARS, Crop Science Research Laboratory , MS , USA.

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http://dx.doi.org/10.21307/jofnem-2018-053DOI Listing
January 2018

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids.

Sci Rep 2017 11 10;7(1):15274. Epub 2017 Nov 10.

Department of Molecular Biosciences, Center for Computational Biology and Bioinformatics, and Institute for Cellular and Molecular Biology, University of Texas, Austin, TX, 78712, USA.

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http://dx.doi.org/10.1038/s41598-017-14885-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5681701PMC
November 2017

The genome of the cotton bacterial blight pathogen pv. strain MSCT1.

Stand Genomic Sci 2017 24;12:42. Epub 2017 Jul 24.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762 USA.

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http://standardsingenomics.biomedcentral.com/articles/10.118
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http://dx.doi.org/10.1186/s40793-017-0253-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5525278PMC
July 2017

Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems.

Microb Ecol 2017 04 26;73(3):556-569. Epub 2016 Nov 26.

Department of Plant and Soil Sciences, Mississippi State University, 117 Dorman Hall, Mississippi State, MS, 39762, USA.

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http://dx.doi.org/10.1007/s00248-016-0884-8DOI Listing
April 2017

Erratum to: Bacterial Diversity Patterns Differ in Soils Developing in Sub-tropical and Cool-Temperate Ecosystems.

Microb Ecol 2017 04;73(3):570

Department of Plant and Soil Sciences, Mississippi State University, 117 Dorman Hall, Mississippi State, MS, 39762, USA.

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http://dx.doi.org/10.1007/s00248-016-0909-3DOI Listing
April 2017

ERAIZDA: a model for holistic annotation of animal infectious and zoonotic diseases.

Database (Oxford) 2015 18;2015. Epub 2015 Nov 18.

Institute for Genomics, Biocomputing & Biotechnology (IGBB), Mississippi State University, Mississippi State, MS 39762 USA.

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http://dx.doi.org/10.1093/database/bav110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4651161PMC
August 2016

Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois).

PLoS One 2016 20;11(1):e0147197. Epub 2016 Jan 20.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, Mississippi, 39762, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0147197PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4720363PMC
August 2016

Independent Domestication of Two Old World Cotton Species.

Genome Biol Evol 2016 07 2;8(6):1940-7. Epub 2016 Jul 2.

Department of Ecology, Evolution and Organismal Biology, Iowa State University

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http://dx.doi.org/10.1093/gbe/evw129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943200PMC
July 2016

Comparative genome-wide analysis reveals that Burkholderia contaminans MS14 possesses multiple antimicrobial biosynthesis genes but not major genetic loci required for pathogenesis.

Microbiologyopen 2016 06 14;5(3):353-69. Epub 2016 Jan 14.

Departments of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi state, Mississippi.

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http://dx.doi.org/10.1002/mbo3.333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905989PMC
June 2016

Epigenomics and bolting tolerance in sugar beet genotypes.

J Exp Bot 2016 Jan 13;67(1):207-25. Epub 2015 Oct 13.

Université d'Orléans, Faculté des Sciences, Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), UPRES EA 1207, 45067 Orléans, France INRA, USC1328 Arbres et Réponses aux Contraintes Hydriques et Environnementales (ARCHE), 45067 Orléans, France

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http://dx.doi.org/10.1093/jxb/erv449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682430PMC
January 2016

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Nat Biotechnol 2015 May 20;33(5):531-7. Epub 2015 Apr 20.

1] State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Hybrid R &D Engineering Center (the Ministry of Education), Nanjing Agricultural University, Nanjing, Jiangsu, China. [2] Department of Molecular Biosciences, Center for Computational Biology and Bioinformatics, and Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas, USA.

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http://dx.doi.org/10.1038/nbt.3207DOI Listing
May 2015

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Science 2014 Dec 11;346(6215):1254449. Epub 2014 Dec 11.

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Mississippi State, MS 39762, USA. Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA. Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409, USA.

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http://jarvislab.net/wp-content/uploads/2012/02/Green-et-al-
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http://www.sciencemag.org/cgi/doi/10.1126/science.1254449
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http://dx.doi.org/10.1126/science.1254449DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4386873PMC
December 2014

Draft Genome Sequence of Burkholderia pyrrocinia Lyc2, a Biological Control Strain That Can Suppress Multiple Plant Microbial Pathogens.

Genome Announc 2014 Oct 2;2(5). Epub 2014 Oct 2.

Department of Biochemistry, Molecular Biology Entomology and Plant Pathology, Mississippi State University, Mississippi State, Mississippi, USA

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http://dx.doi.org/10.1128/genomeA.00991-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183879PMC
October 2014

Transcriptomic dissection of the rice-Burkholderia glumae interaction.

BMC Genomics 2014 Sep 3;15:755. Epub 2014 Sep 3.

Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi, MS 39762, USA.

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http://dx.doi.org/10.1186/1471-2164-15-755DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165909PMC
September 2014

Extensive and biased intergenomic nonreciprocal DNA exchanges shaped a nascent polyploid genome, Gossypium (cotton).

Genetics 2014 Aug 6;197(4):1153-63. Epub 2014 Jun 6.

Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 Department of Plant Biology, University of Georgia, Athens, Georgia 30602 Department of Crop and Soil Science and Department of Genetics, University of Georgia, Athens, Georgia 30602

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http://dx.doi.org/10.1534/genetics.114.166124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4125390PMC
August 2014

Computational prediction of disease microRNAs in domestic animals.

BMC Res Notes 2014 Jun 27;7:403. Epub 2014 Jun 27.

Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, P, O, Box 6100, Mississippi State 39762, USA.

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http://dx.doi.org/10.1186/1756-0500-7-403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091757PMC
June 2014

Towards decoding the conifer giga-genome.

Plant Mol Biol 2012 Dec 9;80(6):555-69. Epub 2012 Sep 9.

Center for Forest Research, Institute for Integrative and Systems Biology, Université Laval, Québec, Québec G1V 0A6, Canada.

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http://dx.doi.org/10.1007/s11103-012-9961-7DOI Listing
December 2012

Transcriptome-based differentiation of closely-related Miscanthus lines.

PLoS One 2012 10;7(1):e29850. Epub 2012 Jan 10.

Institute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0029850PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3254643PMC
May 2012

Characterization of the genome of bald cypress.

BMC Genomics 2011 Nov 11;12:553. Epub 2011 Nov 11.

Mississippi Genome Exploration Laboratory and Department of Plant & Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1186/1471-2164-12-553DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228858PMC
November 2011

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.

PLoS One 2011 Jan 21;6(1):e16214. Epub 2011 Jan 21.

Mississippi Genome Exploration Laboratory and Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America. zvm2@ msstate.edu

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016214PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3025025PMC
January 2011

Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus.

BMC Genomics 2010 Jun 11;11:374. Epub 2010 Jun 11.

USDA-ARS, Knipling-Bushland U,S, Livestock Insects Research Laboratory, 2700 Fredericksburg Rd,, Kerrville, TX 78028, USA.

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http://dx.doi.org/10.1186/1471-2164-11-374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2893602PMC
June 2010

Growth hormone alters lipid composition and increases the abundance of casein and lactalbumin mRNA in the MAC-T cell line.

J Dairy Res 2010 May;77(2):199-204

Animal Science Department, California Polytechnic State University, San Luis Obispo 93407, USA.

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http://www.journals.cambridge.org/abstract_S0022029910000087
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http://dx.doi.org/10.1017/S0022029910000087DOI Listing
May 2010

A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization.

BMC Genomics 2009 Jul 14;10 Suppl 2:S9. Epub 2009 Jul 14.

Mississippi Genome Exploration Laboratory, Department of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS, USA.

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http://dx.doi.org/10.1186/1471-2164-10-S2-S9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2966330PMC
July 2009

CotQuest: improved algorithm and software for nonlinear regression analysis of DNA reassociation kinetics data.

Anal Biochem 2009 May 12;388(2):322-30. Epub 2009 Mar 12.

Department of Statistical Science, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/j.ab.2009.03.007DOI Listing
May 2009

Empirical comparison of ab initio repeat finding programs.

Nucleic Acids Res 2008 Apr 20;36(7):2284-94. Epub 2008 Feb 20.

Department of Computer Science and Engineering, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1093/nar/gkn064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367713PMC
April 2008

Moderate zinc restriction affects intestinal health and immune function in lipopolysaccharide-challenged mice.

J Nutr Biochem 2008 Mar 6;19(3):193-9. Epub 2007 Jul 6.

Animal Science Department, California Polytechnic State University, San Luis Obispo, CA 93407, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S095528630700081
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http://dx.doi.org/10.1016/j.jnutbio.2007.02.011DOI Listing
March 2008

An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.

Anal Biochem 2008 Feb 10;373(1):78-87. Epub 2007 Aug 10.

Mississippi Genome Exploration Laboratory, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1016/j.ab.2007.08.008DOI Listing
February 2008

Comment on "Computational improvements reveal great bacterial diversity and high metal toxicity in soil".

Science 2006 Aug;313(5789):918; author reply 918

Department of Statistical Science, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1126/science.1126593DOI Listing
August 2006

The efficacy of Cot-based gene enrichment in wheat (Triticum aestivum L.).

Genome 2005 Dec;48(6):1120-6

Wheat Genetics Resource Center, Department of Plant Pathology, Kansas State University, Manhattan 66506, USA.

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http://www.nrcresearchpress.com/doi/10.1139/g05-080
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http://dx.doi.org/10.1139/g05-080DOI Listing
December 2005

The repetitive landscape of the chicken genome.

Genome Res 2005 Jan 15;15(1):126-36. Epub 2004 Jul 15.

Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1101/gr.2438004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540276PMC
January 2005

Structure and evolution of cereal genomes.

Curr Opin Genet Dev 2003 Dec;13(6):644-50

Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1016/j.gde.2003.10.002DOI Listing
December 2003

Efficient capture of unique sequences from eukaryotic genomes.

Trends Genet 2002 Nov;18(11):547-50

Dept of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1016/s0168-9525(02)02764-6DOI Listing
November 2002