Daniel E Zak

Daniel E Zak

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Daniel E Zak

Daniel E Zak

Publications by authors named "Daniel E Zak"

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39Publications

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Multinomial modelling of TB/HIV co-infection yields a robust predictive signature and generates hypotheses about the HIV+TB+ disease state.

PLoS One 2019 15;14(7):e0219322. Epub 2019 Jul 15.

Center for Infectious Disease Research (formerly Seattle Biomedical Research Institute), Seattle, WA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0219322PLOS
July 2019

A Serum Circulating miRNA Signature for Short-Term Risk of Progression to Active Tuberculosis Among Household Contacts.

Front Immunol 2018 13;9:661. Epub 2018 Apr 13.

DST/NRF Centre of Excellence for Biomedical TB Research and MRC Centre for TB Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, South Africa.

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http://dx.doi.org/10.3389/fimmu.2018.00661DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5908968PMC
June 2019

Discovery and validation of a prognostic proteomic signature for tuberculosis progression: A prospective cohort study.

PLoS Med 2019 04 16;16(4):e1002781. Epub 2019 Apr 16.

South African Tuberculosis Vaccine Initiative, Division of Immunology, Department of Pathology and Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa.

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http://dx.doi.org/10.1371/journal.pmed.1002781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467365PMC
April 2019

Batf2 differentially regulates tissue immunopathology in Type 1 and Type 2 diseases.

Mucosal Immunol 2019 03 12;12(2):390-402. Epub 2018 Dec 12.

International Centre for Genetic Engineering and Biotechnology (ICGEB), Cape Town Component, Cape Town, 7925, South Africa.

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http://www.nature.com/articles/s41385-018-0108-2
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http://dx.doi.org/10.1038/s41385-018-0108-2DOI Listing
March 2019

Considerations for biomarker-targeted intervention strategies for tuberculosis disease prevention.

Tuberculosis (Edinb) 2018 03 22;109:61-68. Epub 2017 Nov 22.

South African Tuberculosis Vaccine Initiative, Institute of Infectious Disease and Molecular Medicine, Division of Immunology, Department of Pathology, University of Cape Town, South Africa. Electronic address:

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http://dx.doi.org/10.1016/j.tube.2017.11.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884308PMC
March 2018

Diagnostic performance of an optimized transcriptomic signature of risk of tuberculosis in cryopreserved peripheral blood mononuclear cells.

Tuberculosis (Edinb) 2018 01 6;108:124-126. Epub 2017 Nov 6.

South African Tuberculosis Vaccine Initiative, Institute of Infectious Disease and Molecular Medicine and Division of Immunology, Department of Pathology, University of Cape Town, 7925, Cape Town, South Africa. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S14729792173032
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http://dx.doi.org/10.1016/j.tube.2017.11.001DOI Listing
January 2018

Systems integration of innate and adaptive immunity.

Vaccine 2015 Sep 21;33(40):5241-8. Epub 2015 Jun 21.

The Center for Infectious Disease Research, formerly Seattle Biomedical Research Institute, 307 Westlake Ave N, Suite 500, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.vaccine.2015.05.098DOI Listing
September 2015

Systems-level analysis of innate immunity.

Annu Rev Immunol 2014 ;32:547-77

Seattle BioMed, Seattle, Washington 98109; email:

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http://dx.doi.org/10.1146/annurev-immunol-032713-120254DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4084718PMC
November 2014

Cutting edge: Mouse NAIP1 detects the type III secretion system needle protein.

J Immunol 2013 Oct 16;191(8):3986-9. Epub 2013 Sep 16.

Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599;

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http://dx.doi.org/10.4049/jimmunol.1301549DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3819181PMC
October 2013

Caspase-11 protects against bacteria that escape the vacuole.

Science 2013 Feb 24;339(6122):975-8. Epub 2013 Jan 24.

Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1126/science.1230751DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697099PMC
February 2013

Overcoming limitations in the systems vaccinology approach: a pathway for accelerated HIV vaccine development.

Curr Opin HIV AIDS 2012 Jan;7(1):58-63

Seattle Biomedical Research Institute, Seattle, Washington, USA.

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http://dx.doi.org/10.1097/COH.0b013e32834ddd31DOI Listing
January 2012

A systems view of host defense.

Nat Biotechnol 2009 Nov;27(11):999-1001

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http://dx.doi.org/10.1038/nbt1109-999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3076594PMC
November 2009

Systems biology of innate immunity.

Immunol Rev 2009 Jan;227(1):264-82

Institute for Systems Biology, Seattle, WA 98103, USA.

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http://dx.doi.org/10.1111/j.1600-065X.2008.00721.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2697920PMC
January 2009

Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling.

Genome Biol 2006 ;7(6):R48

Daniel Baugh Institute for Functional Genomics and Computational Biology, Department of Pathology, Thomas Jefferson University, Locust St, Philadelphia, PA 19107, USA.

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http://link.springer.com/content/pdf/10.1186/gb-2006-7-6-r48
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http://genomebiology.com/2006/7/6/R48
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http://dx.doi.org/10.1186/gb-2006-7-6-r48DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1779538PMC
October 2006

Modeling the VPAC2-activated cAMP/PKA signaling pathway: from receptor to circadian clock gene induction.

Biophys J 2006 Mar 9;90(5):1560-71. Epub 2005 Dec 9.

Department of Chemical Engineering and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19176, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000634950672345
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http://dx.doi.org/10.1529/biophysj.105.065250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1367307PMC
March 2006

Continuous-time identification of gene expression models.

OMICS 2003 ;7(4):373-86

Department of Chemical Engineering, University of Delaware, Newark, Delaware, USA.

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http://dx.doi.org/10.1089/153623103322637689DOI Listing
October 2004

PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification.

OMICS 2003 ;7(3):235-52

Baugh Institute for Functional Genomics and Computational Biology, Department of Pathology, Thomas Jefferson University, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1089/153623103322452378DOI Listing
May 2004