Daniel E Weeks

Daniel E Weeks

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Daniel E Weeks

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Genetic Variability and Trajectories of DNA Methylation May Support a Role for HAMP in Patient Outcomes After Aneurysmal Subarachnoid Hemorrhage.

Neurocrit Care 2019 Jul 25. Epub 2019 Jul 25.

Department of Health Promotion and Development, School of Nursing, University of Pittsburgh, 440 Victoria Building, 3500 Victoria Street, Pittsburgh, PA, 15261, USA.

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http://dx.doi.org/10.1007/s12028-019-00787-4DOI Listing
July 2019

Spinning convincing stories for both true and false association signals.

Genet Epidemiol 2019 06 18;43(4):356-364. Epub 2019 Jan 18.

Department of Human Genetics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania.

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http://dx.doi.org/10.1002/gepi.22189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6590226PMC
June 2019

DNA methylation in nasal epithelium, atopy, and atopic asthma in children: a genome-wide study.

Lancet Respir Med 2019 Apr 21;7(4):336-346. Epub 2018 Dec 21.

Division of Pulmonary Medicine, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, PA, USA; Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22132600183046
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http://dx.doi.org/10.1016/S2213-2600(18)30466-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6441380PMC
April 2019

Statistics for X-chromosome associations.

Genet Epidemiol 2018 09 13;42(6):539-550. Epub 2018 Jun 13.

Department of Biostatistics, University of Pittsburgh, Pittsburgh, Pennsylvania.

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http://dx.doi.org/10.1002/gepi.22132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6394852PMC
September 2018

The Mega2R package: R tools for accessing and processing genetic data in common formats.

F1000Res 2018 29;7:1352. Epub 2018 Aug 29.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, 15261, USA.

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http://dx.doi.org/10.12688/f1000research.15949.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6137409.2PMC
August 2018

Novel caries loci in children and adults implicated by genome-wide analysis of families.

BMC Oral Health 2018 06 1;18(1):98. Epub 2018 Jun 1.

Center for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Suite 500 Bridgeside Point, 100 Technology Drive, Pittsburgh, PA, 15219, USA.

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http://dx.doi.org/10.1186/s12903-018-0559-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984765PMC
June 2018

Genome-wide analysis of disease progression in age-related macular degeneration.

Hum Mol Genet 2018 03;27(5):929-940

Division of Pulmonary Medicine, Allergy and Immunology, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC University of Pittsburgh, Pittsburgh, PA 15224, USA.

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http://dx.doi.org/10.1093/hmg/ddy002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6059197PMC
March 2018

Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.

Medicine (Baltimore) 2018 Mar;97(9):e0043

Department of Population, Family and Reproductive Health, Center on the Early Life Origins of Disease, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD.

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http://dx.doi.org/10.1097/MD.0000000000010043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851764PMC
March 2018

Rare-Variant Kernel Machine Test for Longitudinal Data from Population and Family Samples.

Hum Hered 2015 29;80(3):126-38. Epub 2016 Apr 29.

Division of Pulmonary Medicine, Allergy and Immunology, Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, Pa., USA.

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http://dx.doi.org/10.1159/000445057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4940283PMC
October 2017

An epigenome-wide association study of total serum IgE in Hispanic children.

J Allergy Clin Immunol 2017 Aug 6;140(2):571-577. Epub 2017 Jan 6.

Division of Pediatric Pulmonary Medicine, Allergy, and Immunology, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh, Pittsburgh, Pa. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2016.11.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5500449PMC
August 2017

Joint Analysis of Nuclear and Mitochondrial Variants in Age-Related Macular Degeneration Identifies Novel Loci TRPM1 and ABHD2/RLBP1.

Invest Ophthalmol Vis Sci 2017 08;58(10):4027-4038

John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, United States.

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http://dx.doi.org/10.1167/iovs.17-21734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559178PMC
August 2017

Genetic risk models: Influence of model size on risk estimates and precision.

Genet Epidemiol 2017 05 15;41(4):282-296. Epub 2017 Feb 15.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.

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http://dx.doi.org/10.1002/gepi.22035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628612PMC
May 2017

Meta-analysis of quantitative pleiotropic traits for next-generation sequencing with multivariate functional linear models.

Eur J Hum Genet 2017 02 21;25(3):350-359. Epub 2016 Dec 21.

Biostatistics and Bioinformatics Branch, Division of Intramural Population Health Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD USA.

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http://dx.doi.org/10.1038/ejhg.2016.170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315507PMC
February 2017

A comparison study of multivariate fixed models and Gene Association with Multiple Traits (GAMuT) for next-generation sequencing.

Genet Epidemiol 2017 Jan 5;41(1):18-34. Epub 2016 Dec 5.

Biostatistics and Bioinformatics Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health (NIH), Bethesda, MD, USA.

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http://dx.doi.org/10.1002/gepi.22014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154843PMC
January 2017

A Comparison Study of Fixed and Mixed Effect Models for Gene Level Association Studies of Complex Traits.

Genet Epidemiol 2016 Dec 4;40(8):702-721. Epub 2016 Jul 4.

Human Genetics Center, University of Texas-Houston, Houston, Texas, United States of America.

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http://dx.doi.org/10.1002/gepi.21984DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5567849PMC
December 2016

Efficient Identification of Null-Allele Single Nucleotide Polymorphism Markers.

Hum Hered 2015 28;80(2):79-89. Epub 2015 Nov 28.

Department of Population Health Science and Policy, Icahn School of Medicine at Mount Sinai, New York, N.Y., USA.

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http://dx.doi.org/10.1159/000441279DOI Listing
September 2016

Epigenome-wide association study links site-specific DNA methylation changes with cow's milk allergy.

J Allergy Clin Immunol 2016 09 25;138(3):908-911.e9. Epub 2016 Apr 25.

Department of Population, Family and Reproductive Health, Center on the Early Life Origins of Disease, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Md; Division of General Pediatrics & Adolescent Medicine, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Md. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2016.01.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5392112PMC
September 2016

A thrifty variant in CREBRF strongly influences body mass index in Samoans.

Nat Genet 2016 09 25;48(9):1049-1054. Epub 2016 Jul 25.

International Health Institute, Department of Epidemiology, Brown University School of Public Health, Providence, Rhode Island, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069069PMC
http://dx.doi.org/10.1038/ng.3620DOI Listing
September 2016

The impact of genotype calling errors on family-based studies.

Sci Rep 2016 06 22;6:28323. Epub 2016 Jun 22.

Division of Pulmonary Medicine, Allergy and Immunology; Department of Pediatrics, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh, Pittsburgh, PA 15224, USA.

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http://dx.doi.org/10.1038/srep28323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4916415PMC
June 2016

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.

Authors:
Lars G Fritsche Wilmar Igl Jessica N Cooke Bailey Felix Grassmann Sebanti Sengupta Jennifer L Bragg-Gresham Kathryn P Burdon Scott J Hebbring Cindy Wen Mathias Gorski Ivana K Kim David Cho Donald Zack Eric Souied Hendrik P N Scholl Elisa Bala Kristine E Lee David J Hunter Rebecca J Sardell Paul Mitchell Joanna E Merriam Valentina Cipriani Joshua D Hoffman Tina Schick Yara T E Lechanteur Robyn H Guymer Matthew P Johnson Yingda Jiang Chloe M Stanton Gabriëlle H S Buitendijk Xiaowei Zhan Alan M Kwong Alexis Boleda Matthew Brooks Linn Gieser Rinki Ratnapriya Kari E Branham Johanna R Foerster John R Heckenlively Mohammad I Othman Brendan J Vote Helena Hai Liang Emmanuelle Souzeau Ian L McAllister Timothy Isaacs Janette Hall Stewart Lake David A Mackey Ian J Constable Jamie E Craig Terrie E Kitchner Zhenglin Yang Zhiguang Su Hongrong Luo Daniel Chen Hong Ouyang Ken Flagg Danni Lin Guanping Mao Henry Ferreyra Klaus Stark Claudia N von Strachwitz Armin Wolf Caroline Brandl Guenther Rudolph Matthias Olden Margaux A Morrison Denise J Morgan Matthew Schu Jeeyun Ahn Giuliana Silvestri Evangelia E Tsironi Kyu Hyung Park Lindsay A Farrer Anton Orlin Alexander Brucker Mingyao Li Christine A Curcio Saddek Mohand-Saïd José-Alain Sahel Isabelle Audo Mustapha Benchaboune Angela J Cree Christina A Rennie Srinivas V Goverdhan Michelle Grunin Shira Hagbi-Levi Peter Campochiaro Nicholas Katsanis Frank G Holz Frédéric Blond Hélène Blanché Jean-François Deleuze Robert P Igo Barbara Truitt Neal S Peachey Stacy M Meuer Chelsea E Myers Emily L Moore Ronald Klein Michael A Hauser Eric A Postel Monique D Courtenay Stephen G Schwartz Jaclyn L Kovach William K Scott Gerald Liew Ava G Tan Bamini Gopinath John C Merriam R Theodore Smith Jane C Khan Humma Shahid Anthony T Moore J Allie McGrath Reneé Laux Milam A Brantley Anita Agarwal Lebriz Ersoy Albert Caramoy Thomas Langmann Nicole T M Saksens Eiko K de Jong Carel B Hoyng Melinda S Cain Andrea J Richardson Tammy M Martin John Blangero Daniel E Weeks Bal Dhillon Cornelia M van Duijn Kimberly F Doheny Jane Romm Caroline C W Klaver Caroline Hayward Michael B Gorin Michael L Klein Paul N Baird Anneke I den Hollander Sascha Fauser John R W Yates Rando Allikmets Jie Jin Wang Debra A Schaumberg Barbara E K Klein Stephanie A Hagstrom Itay Chowers Andrew J Lotery Thierry Léveillard Kang Zhang Murray H Brilliant Alex W Hewitt Anand Swaroop Emily Y Chew Margaret A Pericak-Vance Margaret DeAngelis Dwight Stambolian Jonathan L Haines Sudha K Iyengar Bernhard H F Weber Gonçalo R Abecasis Iris M Heid

Nat Genet 2016 Feb 21;48(2):134-43. Epub 2015 Dec 21.

Department of Genetic Epidemiology, University of Regensburg, Regensburg, Germany.

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http://dx.doi.org/10.1038/ng.3448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745342PMC
February 2016

A Pipeline for Classifying Relationships Using Dense SNP/SNV Data and Putative Pedigree Information.

Genet Epidemiol 2016 Feb 28;40(2):161-71. Epub 2015 Dec 28.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.

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http://dx.doi.org/10.1002/gepi.21948DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5146993PMC
February 2016

Gene-Based Association Analysis for Censored Traits Via Fixed Effect Functional Regressions.

Genet Epidemiol 2016 Feb 18;40(2):133-43. Epub 2016 Jan 18.

Division of Pulmonary Medicine, Allergy and Immunology, Children's Hospital of Pittsburgh at The University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.

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http://dx.doi.org/10.1002/gepi.21947DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724326PMC
February 2016

Genetic ME-a visualization application for merging and editing pedigrees for genetic studies.

BMC Res Notes 2015 Jun 16;8:241. Epub 2015 Jun 16.

Department of Ophthalmology, David Geffen School of Medicine-UCLA, Los Angeles, CA, 90095, USA.

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http://dx.doi.org/10.1186/s13104-015-1131-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4478623PMC
June 2015

dbVOR: a database system for importing pedigree, phenotype and genotype data and exporting selected subsets.

BMC Bioinformatics 2015 Mar 18;16:91. Epub 2015 Mar 18.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, PittsburghPennsylvania, 15261, USA.

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http://dx.doi.org/10.1186/s12859-015-0505-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4407391PMC
March 2015

Identification of epidermal growth factor receptor (EGFR) genetic variants that modify risk for head and neck squamous cell carcinoma.

Cancer Lett 2015 Feb 12;357(2):549-56. Epub 2014 Dec 12.

Department of Otolaryngology, University of Pittsburgh, Pittsburgh, PA, USA; Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, PA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.canlet.2014.12.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4295492PMC
February 2015

Mega2: validated data-reformatting for linkage and association analyses.

Source Code Biol Med 2014 5;9(1):26. Epub 2014 Dec 5.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261 USA ; Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261 USA.

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http://dx.doi.org/10.1186/s13029-014-0026-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4269913PMC
February 2015

Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.

Nat Commun 2015 Feb 24;6:6304. Epub 2015 Feb 24.

1] Department of Population, Family and Reproductive Health, Center on the Early Life Origins of Disease, Johns Hopkins University Bloomberg School of Public Health, 615 North Wolfe Street, E4132, Baltimore, Maryland 21205, USA [2] Division of General Pediatrics and Adolescent Medicine, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, USA.

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http://dx.doi.org/10.1038/ncomms7304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340086PMC
February 2015

Prevalence of adiposity and associated cardiometabolic risk factors in the Samoan genome-wide association study.

Am J Hum Biol 2014 Jul-Aug;26(4):491-501. Epub 2014 May 5.

Weight Control and Diabetes Research Center, The Miriam Hospital, Providence, Rhode Island; The Alpert Medical School, Brown University, Providence, Rhode Island.

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http://dx.doi.org/10.1002/ajhb.22553DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4292846PMC
January 2015

Generalized functional linear models for gene-based case-control association studies.

Genet Epidemiol 2014 Nov 9;38(7):622-637. Epub 2014 Sep 9.

Human Genetics Center, University of Texas - Houston P.O. Box 20334, Houston, Texas 77225.

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http://dx.doi.org/10.1002/gepi.21840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189986PMC
November 2014

Endophenotypes for Age-Related Macular Degeneration: Extending Our Reach into the Preclinical Stages of Disease.

J Clin Med 2014 Nov;3(4):1335-56

Department of Ophthalmology, David Geffen School of Medicine-UCLA, Stein Eye Institute, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.3390/jcm3041335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284143PMC
November 2014

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale.

Front Genet 2014 13;5:354. Epub 2014 Oct 13.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh Pittsburgh, PA, USA ; Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh Pittsburgh, PA, USA.

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http://dx.doi.org/10.3389/fgene.2014.00354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4195366PMC
October 2014

Genome-wide association study of periodontal health measured by probing depth in adults ages 18-49 years.

G3 (Bethesda) 2014 Feb 19;4(2):307-14. Epub 2014 Feb 19.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania 15261.

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http://dx.doi.org/10.1534/g3.113.008755DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3931564PMC
February 2014

Seven new loci associated with age-related macular degeneration.

Authors:
Lars G Fritsche Wei Chen Matthew Schu Brian L Yaspan Yi Yu Gudmar Thorleifsson Donald J Zack Satoshi Arakawa Valentina Cipriani Stephan Ripke Robert P Igo Gabriëlle H S Buitendijk Xueling Sim Daniel E Weeks Robyn H Guymer Joanna E Merriam Peter J Francis Gregory Hannum Anita Agarwal Ana Maria Armbrecht Isabelle Audo Tin Aung Gaetano R Barile Mustapha Benchaboune Alan C Bird Paul N Bishop Kari E Branham Matthew Brooks Alexander J Brucker William H Cade Melinda S Cain Peter A Campochiaro Chi-Chao Chan Ching-Yu Cheng Emily Y Chew Kimberly A Chin Itay Chowers David G Clayton Radu Cojocaru Yvette P Conley Belinda K Cornes Mark J Daly Baljean Dhillon Albert O Edwards Evangelos Evangelou Jesen Fagerness Henry A Ferreyra James S Friedman Asbjorg Geirsdottir Ronnie J George Christian Gieger Neel Gupta Stephanie A Hagstrom Simon P Harding Christos Haritoglou John R Heckenlively Frank G Holz Guy Hughes John P A Ioannidis Tatsuro Ishibashi Peronne Joseph Gyungah Jun Yoichiro Kamatani Nicholas Katsanis Claudia N Keilhauer Jane C Khan Ivana K Kim Yutaka Kiyohara Barbara E K Klein Ronald Klein Jaclyn L Kovach Igor Kozak Clara J Lee Kristine E Lee Peter Lichtner Andrew J Lotery Thomas Meitinger Paul Mitchell Saddek Mohand-Saïd Anthony T Moore Denise J Morgan Margaux A Morrison Chelsea E Myers Adam C Naj Yusuke Nakamura Yukinori Okada Anton Orlin M Carolina Ortube Mohammad I Othman Chris Pappas Kyu Hyung Park Gayle J T Pauer Neal S Peachey Olivier Poch Rinki Ratna Priya Robyn Reynolds Andrea J Richardson Raymond Ripp Guenther Rudolph Euijung Ryu José-Alain Sahel Debra A Schaumberg Hendrik P N Scholl Stephen G Schwartz William K Scott Humma Shahid Haraldur Sigurdsson Giuliana Silvestri Theru A Sivakumaran R Theodore Smith Lucia Sobrin Eric H Souied Dwight E Stambolian Hreinn Stefansson Gwen M Sturgill-Short Atsushi Takahashi Nirubol Tosakulwong Barbara J Truitt Evangelia E Tsironi André G Uitterlinden Cornelia M van Duijn Lingam Vijaya Johannes R Vingerling Eranga N Vithana Andrew R Webster H-Erich Wichmann Thomas W Winkler Tien Y Wong Alan F Wright Diana Zelenika Ming Zhang Ling Zhao Kang Zhang Michael L Klein Gregory S Hageman G Mark Lathrop Kari Stefansson Rando Allikmets Paul N Baird Michael B Gorin Jie Jin Wang Caroline C W Klaver Johanna M Seddon Margaret A Pericak-Vance Sudha K Iyengar John R W Yates Anand Swaroop Bernhard H F Weber Michiaki Kubo Margaret M Deangelis Thierry Léveillard Unnur Thorsteinsdottir Jonathan L Haines Lindsay A Farrer Iris M Heid Gonçalo R Abecasis

Nat Genet 2013 Apr 3;45(4):433-9, 439e1-2. Epub 2013 Mar 3.

Institute of Human Genetics, University of Regensburg, Regensburg, Germany.

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http://dx.doi.org/10.1038/ng.2578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739472PMC
April 2013

ADCYAP1R1 and asthma in Puerto Rican children.

Am J Respir Crit Care Med 2013 Mar 17;187(6):584-8. Epub 2013 Jan 17.

Division of Pediatric Pulmonary Medicine, Allergy and Immunology, Children's Hospital of Pittsburgh of UPMC, 4401 Penn Avenue, Pittsburgh, PA 15224, USA.

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http://dx.doi.org/10.1164/rccm.201210-1789OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733434PMC
March 2013

Effects of smoking and genotype on the PSR index of periodontal disease in adults aged 18-49.

Int J Environ Res Public Health 2012 08 10;9(8):2839-50. Epub 2012 Aug 10.

Department of Dental Public Health and Information Management, University of Pittsburgh, School of Dental Medicine, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.3390/ijerph9082839DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3447590PMC
August 2012

ASTN1 and alcohol dependence: family-based association analysis in multiplex alcohol dependence families.

Am J Med Genet B Neuropsychiatr Genet 2012 Jun 9;159B(4):445-55. Epub 2012 Apr 9.

Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15213, USA.

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http://dx.doi.org/10.1002/ajmg.b.32048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3623684PMC
June 2012

Coordinated conditional simulation with SLINK and SUP of many markers linked or associated to a trait in large pedigrees.

Hum Hered 2011 6;71(2):126-34. Epub 2011 Jul 6.

National Center for Biotechnology Information, National Institutes of Health, DHHS, Bethesda 20894, MD, USA. schaffer @ helix.nih.gov

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http://dx.doi.org/10.1159/000324177DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3136384PMC
January 2012

Role of African ancestry and gene-environment interactions in predicting preterm birth.

Obstet Gynecol 2011 Nov;118(5):1081-9

Mary Ann and J. Milburn Smith Child Health Research Program, Children's Memorial Hospital and Children's Memorial Research Center, Chicago, Illinois, USA.

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http://dx.doi.org/10.1097/AOG.0b013e31823389bbDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3218119PMC
November 2011

Enhanced genetic maps from family-based disease studies: population-specific comparisons.

BMC Med Genet 2011 Jan 19;12:15. Epub 2011 Jan 19.

Department of Genetics, Rutgers University, Piscataway, NJ, USA.

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http://dx.doi.org/10.1186/1471-2350-12-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3037840PMC
January 2011

Association tests using kernel-based measures of multi-locus genotype similarity between individuals.

Genet Epidemiol 2010 Apr;34(3):213-21

Human Genetics Unit, Indian Statistical Institute, Kolkata, West Bengal, India.

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http://dx.doi.org/10.1002/gepi.20451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3272581PMC
April 2010

Genetic variants near TIMP3 and high-density lipoprotein-associated loci influence susceptibility to age-related macular degeneration.

Proc Natl Acad Sci U S A 2010 Apr 12;107(16):7401-6. Epub 2010 Apr 12.

Center for Statistical Genetics, Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.1073/pnas.0912702107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867722PMC
April 2010

Two-dimensional linkage analyses of rheumatoid arthritis.

BMC Proc 2007 18;1 Suppl 1:S68. Epub 2007 Dec 18.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, A300 Crabtree Hall, 130 DeSoto Street, Pittsburgh, Pennsylvania 15261, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367460PMC
http://dx.doi.org/10.1186/1753-6561-1-s1-s68DOI Listing
December 2009

A tagging SNP in INSIG2 is associated with obesity-related phenotypes among Samoans.

BMC Med Genet 2009 Dec 22;10:143. Epub 2009 Dec 22.

Center for Genome Information, Department of Environmental Health, University of Cincinnati College of Medicine, 3223 Eden Avenue, Cincinnati, OH 45267, USA.

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http://dx.doi.org/10.1186/1471-2350-10-143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2804583PMC
December 2009

Suggestive linkage detected for blood pressure related traits on 2q and 22q in the population on the Samoan islands.

BMC Med Genet 2009 Oct 23;10:107. Epub 2009 Oct 23.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, 130 Desoto St, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1186/1471-2350-10-107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2770055PMC
October 2009

Casares' map function: no need for a 'corrected' Haldane's map function.

Genetica 2009 Apr 5;135(3):305-7. Epub 2008 Jul 5.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Crabtree Hall, Room A303, 130 DeSoto Street, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1007/s10709-008-9287-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704907PMC
April 2009

Interpretation of genetic association studies: markers with replicated highly significant odds ratios may be poor classifiers.

PLoS Genet 2009 Feb 6;5(2):e1000337. Epub 2009 Feb 6.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

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http://dx.doi.org/10.1371/journal.pgen.1000337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629574PMC
February 2009

Dopaminergic mutations: within-family association and linkage in multiplex alcohol dependence families.

Am J Med Genet B Neuropsychiatr Genet 2008 Jun;147B(4):517-26

Department of Psychiatry, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA.

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http://doi.wiley.com/10.1002/ajmg.b.30630
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http://dx.doi.org/10.1002/ajmg.b.30630DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3280909PMC
June 2008

Relationship uncertainty linkage statistics (RULS): affected relative pair statistics that model relationship uncertainty.

Genet Epidemiol 2008 May;32(4):313-24

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, USA.

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http://dx.doi.org/10.1002/gepi.20306DOI Listing
May 2008

C2 and CFB genes in age-related maculopathy and joint action with CFH and LOC387715 genes.

PLoS One 2008 May 21;3(5):e2199. Epub 2008 May 21.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002199PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374901PMC
May 2008

Robust score statistics for QTL linkage analysis.

Am J Hum Genet 2008 Mar 21;82(3):567-82. Epub 2008 Feb 21.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1016/j.ajhg.2007.11.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427220PMC
March 2008

A hierarchical model for estimating significance levels of non-parametric linkage statistics for large pedigrees.

Genet Epidemiol 2007 Jul;31(5):417-30

Department of Bioinformatics and Biostatistics, School of Public Health and Information Sciences, Universtiy of Louisville, Louisville, Kentucky 40292, USA.

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http://dx.doi.org/10.1002/gepi.20222DOI Listing
July 2007

Mapping autism risk loci using genetic linkage and chromosomal rearrangements.

Authors:
Peter Szatmari Andrew D Paterson Lonnie Zwaigenbaum Wendy Roberts Jessica Brian Xiao-Qing Liu John B Vincent Jennifer L Skaug Ann P Thompson Lili Senman Lars Feuk Cheng Qian Susan E Bryson Marshall B Jones Christian R Marshall Stephen W Scherer Veronica J Vieland Christopher Bartlett La Vonne Mangin Rhinda Goedken Alberto Segre Margaret A Pericak-Vance Michael L Cuccaro John R Gilbert Harry H Wright Ruth K Abramson Catalina Betancur Thomas Bourgeron Christopher Gillberg Marion Leboyer Joseph D Buxbaum Kenneth L Davis Eric Hollander Jeremy M Silverman Joachim Hallmayer Linda Lotspeich James S Sutcliffe Jonathan L Haines Susan E Folstein Joseph Piven Thomas H Wassink Val Sheffield Daniel H Geschwind Maja Bucan W Ted Brown Rita M Cantor John N Constantino T Conrad Gilliam Martha Herbert Clara Lajonchere David H Ledbetter Christa Lese-Martin Janet Miller Stan Nelson Carol A Samango-Sprouse Sarah Spence Matthew State Rudolph E Tanzi Hilary Coon Geraldine Dawson Bernie Devlin Annette Estes Pamela Flodman Lambertus Klei William M McMahon Nancy Minshew Jeff Munson Elena Korvatska Patricia M Rodier Gerard D Schellenberg Moyra Smith M Anne Spence Chris Stodgell Ping Guo Tepper Ellen M Wijsman Chang-En Yu Bernadette Rogé Carine Mantoulan Kerstin Wittemeyer Annemarie Poustka Bärbel Felder Sabine M Klauck Claudia Schuster Fritz Poustka Sven Bölte Sabine Feineis-Matthews Evelyn Herbrecht Gabi Schmötzer John Tsiantis Katerina Papanikolaou Elena Maestrini Elena Bacchelli Francesca Blasi Simona Carone Claudio Toma Herman Van Engeland Maretha de Jonge Chantal Kemner Frederieke Koop Frederike Koop Marjolein Langemeijer Marjolijn Langemeijer Channa Hijmans Channa Hijimans Wouter G Staal Gillian Baird Patrick F Bolton Michael L Rutter Emma Weisblatt Jonathan Green Catherine Aldred Julie-Anne Wilkinson Andrew Pickles Ann Le Couteur Tom Berney Helen McConachie Anthony J Bailey Kostas Francis Gemma Honeyman Aislinn Hutchinson Jeremy R Parr Simon Wallace Anthony P Monaco Gabrielle Barnby Kazuhiro Kobayashi Janine A Lamb Ines Sousa Nuala Sykes Edwin H Cook Stephen J Guter Bennett L Leventhal Jeff Salt Catherine Lord Christina Corsello Vanessa Hus Daniel E Weeks Fred Volkmar Maïté Tauber Eric Fombonne Andy Shih Kacie J Meyer

Nat Genet 2007 Mar 18;39(3):319-28. Epub 2007 Feb 18.

Department of Psychiatry and Behavioural Neurosciences, McMaster University, Hamilton, Ontario L8N 3Z5, Canada.

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http://dx.doi.org/10.1038/ng1985DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4867008PMC
March 2007

The elusive goal of pedigree weights.

Genet Epidemiol 2007 Jan;31(1):51-65

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1002/gepi.20188DOI Listing
January 2007

Gene-dropping vs. empirical variance estimation for allele-sharing linkage statistics.

Genet Epidemiol 2006 Dec;30(8):652-65

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, PA 15261, USA.

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http://doi.wiley.com/10.1002/gepi.20177
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December 2006

Treatment of uninformative families in mean allele sharing tests for linkage.

Stat Appl Genet Mol Biol 2006 12;5:Article13. Epub 2006 May 12.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.

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http://dx.doi.org/10.2202/1544-6115.1206DOI Listing
December 2006

CFH, ELOVL4, PLEKHA1 and LOC387715 genes and susceptibility to age-related maculopathy: AREDS and CHS cohorts and meta-analyses.

Hum Mol Genet 2006 Nov 25;15(21):3206-18. Epub 2006 Sep 25.

Department of Health Promotion and Development, School of Nursing, University of Pittsburgh, The Eye and Ear Institute Building, 203 Lothrop Street, Pittsburgh, PA 15261, USA

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http://dx.doi.org/10.1093/hmg/ddl396DOI Listing
November 2006

Ordered genotypes: an extended ITO method and a general formula for genetic covariance.

Am J Hum Genet 2006 Jun 25;78(6):1035-45. Epub 2006 Apr 25.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000292970763924
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http://dx.doi.org/10.1086/504045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474083PMC
June 2006

The Khatri Sikh Diabetes Study (SDS): study design, methodology, sample collection, and initial results.

Hum Biol 2006 Feb;78(1):43-63

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1353/hub.2006.0027DOI Listing
February 2006

Comparison of methods incorporating quantitative covariates into affected sib pair linkage analysis.

Genet Epidemiol 2006 Jan;30(1):77-93

Department of Human Genetics, University of Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1002/gepi.20126DOI Listing
January 2006

Analysis of alcohol dependence phenotype in the COGA families using covariates to detect linkage.

BMC Genet 2005 Dec 30;6 Suppl 1:S143. Epub 2005 Dec 30.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1186/1471-2156-6-S1-S143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866792PMC
December 2005

A comparison between microsatellite and single-nucleotide polymorphism markers with respect to two measures of information content.

BMC Genet 2005 Dec 30;6 Suppl 1:S27. Epub 2005 Dec 30.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1186/1471-2156-6-S1-S27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1866759PMC
December 2005

Susceptibility genes for age-related maculopathy on chromosome 10q26.

Am J Hum Genet 2005 Sep 26;77(3):389-407. Epub 2005 Jul 26.

Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15213, USA.

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http://dx.doi.org/10.1086/444437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1226205PMC
September 2005

Candidate gene analysis suggests a role for fatty acid biosynthesis and regulation of the complement system in the etiology of age-related maculopathy.

Hum Mol Genet 2005 Jul 1;14(14):1991-2002. Epub 2005 Jun 1.

Department of Health Promotion and Development, School of Nursing, University of Pittsburgh, PA, USA.

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http://dx.doi.org/10.1093/hmg/ddi204DOI Listing
July 2005

Comparative study of multipoint methods for genotype error detection.

Hum Hered 2004 ;58(3-4):175-89

Department of Human Genetic, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1159/000083545DOI Listing
June 2005

Mega2: data-handling for facilitating genetic linkage and association analyses.

Bioinformatics 2005 May 3;21(10):2556-7. Epub 2005 Mar 3.

Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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May 2005