Publications Authored by Daniel E Neafsey

Estimating Relatedness Between Malaria Parasites.

Authors:

Aimee R Taylor Pierre E Jacob Daniel E Neafsey Caroline O Buckee

Genetics 2019 08 17;212(4):1337-1351. Epub 2019 Jun 17.

Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, Massachusetts 02115.

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http://dx.doi.org/10.1534/genetics.119.302120	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6707449	PMC

August 2019

Detection of low-density Plasmodium falciparum infections using amplicon deep sequencing.

Authors:

Angela M Early Rachel F Daniels Timothy M Farrell Jonna Grimsby Sarah K Volkman Dyann F Wirth Bronwyn L MacInnis Daniel E Neafsey

Malar J 2019 Jul 1;18(1):219. Epub 2019 Jul 1.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

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http://dx.doi.org/10.1186/s12936-019-2856-1	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6604269	PMC

July 2019

Naturally acquired immunity against immature gametocytes.

Sci Transl Med 2019 Jun;11(495)

Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health, Boston, MA, USA.

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http://dx.doi.org/10.1126/scitranslmed.aav3963	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6653583	PMC

June 2019

Mutations in actin-binding protein coronin confer reduced artemisinin susceptibility.

Authors:

Allison R Demas Aabha I Sharma Wesley Wong Angela M Early Seth Redmond Selina Bopp Daniel E Neafsey Sarah K Volkman Daniel L Hartl Dyann F Wirth

Proc Natl Acad Sci U S A 2018 12 12;115(50):12799-12804. Epub 2018 Nov 12.

Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1812317115	Publisher Site
http://dx.doi.org/10.1073/pnas.1812317115	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6294886	PMC

December 2018

Correction to: Mapping malaria by combining parasite genomic and epidemiologic data.

Authors:

Amy Wesolowski Aimee R Taylor Hsiao-Han Chang Robert Verity Sofonias Tessema Jeffrey A Bailey T Alex Perkins Daniel E Neafsey Bryan Greenhouse Caroline O Buckee

BMC Med 2018 12 28;16(1):241. Epub 2018 Dec 28.

Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA.

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http://dx.doi.org/10.1186/s12916-018-1232-2	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6309057	PMC

December 2018

Improved reference genome of Aedes aegypti informs arbovirus vector control.

Authors:

Benjamin J Matthews Olga Dudchenko Sarah B Kingan Sergey Koren Igor Antoshechkin Jacob E Crawford William J Glassford Margaret Herre Seth N Redmond Noah H Rose Gareth D Weedall Yang Wu Sanjit S Batra Carlos A Brito-Sierra Steven D Buckingham Corey L Campbell Saki Chan Eric Cox Benjamin R Evans Thanyalak Fansiri Igor Filipović Albin Fontaine Andrea Gloria-Soria Richard Hall Vinita S Joardar Andrew K Jones Raissa G G Kay Vamsi K Kodali Joyce Lee Gareth J Lycett Sara N Mitchell Jill Muehling Michael R Murphy Arina D Omer Frederick A Partridge Paul Peluso Aviva Presser Aiden Vidya Ramasamy Gordana Rašić Sourav Roy Karla Saavedra-Rodriguez Shruti Sharan Atashi Sharma Melissa Laird Smith Joe Turner Allison M Weakley Zhilei Zhao Omar S Akbari William C Black Han Cao Alistair C Darby Catherine A Hill J Spencer Johnston Terence D Murphy Alexander S Raikhel David B Sattelle Igor V Sharakhov Bradley J White Li Zhao Erez Lieberman Aiden Richard S Mann Louis Lambrechts Jeffrey R Powell Maria V Sharakhova Zhijian Tu Hugh M Robertson Carolyn S McBride Alex R Hastie Jonas Korlach Daniel E Neafsey Adam M Phillippy Leslie B Vosshall

Nature 2018 11 14;563(7732):501-507. Epub 2018 Nov 14.

Laboratory of Neurogenetics and Behavior, The Rockefeller University, New York, NY, USA.

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http://www.nature.com/articles/s41586-018-0692-z	Publisher Site
http://dx.doi.org/10.1038/s41586-018-0692-z	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6421076	PMC

November 2018

Mapping malaria by combining parasite genomic and epidemiologic data.

Authors:

Amy Wesolowski Aimee R Taylor Hsiao-Han Chang Robert Verity Sofonias Tessema Jeffrey A Bailey T Alex Perkins Daniel E Neafsey Bryan Greenhouse Caroline O Buckee

BMC Med 2018 10 18;16(1):190. Epub 2018 Oct 18.

Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA.

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https://www.biorxiv.org/content/early/2018/03/26/288506.full	Web Search
https://bmcmedicine.biomedcentral.com/track/pdf/10.1186/s129	Web Search
https://bmcmedicine.biomedcentral.com/track/pdf/10.1186/s129	Web Search
https://bmcmedicine.biomedcentral.com/articles/10.1186/s1291	Publisher Site
http://dx.doi.org/10.1186/s12916-018-1181-9	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6193293	PMC

October 2018

Probing sexual commitment at the single-cell level.

Authors:

Nicolas M B Brancucci Mariana De Niz Timothy J Straub Deepali Ravel Lauriane Sollelis Bruce W Birren Till S Voss Daniel E Neafsey Matthias Marti

Wellcome Open Res 2018 17;3:70. Epub 2018 Oct 17.

Wellcome Centre for Molecular Parasitology, Institute of Infection, Immunity & Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.

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http://dx.doi.org/10.12688/wellcomeopenres.14645.4	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143928.4	PMC

October 2018

De Novo Mutations Resolve Disease Transmission Pathways in Clonal Malaria.

Authors:

Seth N Redmond Bronwyn M MacInnis Selina Bopp Amy K Bei Daouda Ndiaye Daniel L Hartl Dyann F Wirth Sarah K Volkman Daniel E Neafsey

Mol Biol Evol 2018 07;35(7):1678-1689

Broad Institute of MIT and Harvard, Cambridge, MA.

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https://academic.oup.com/mbe/article/35/7/1678/4962453	Publisher Site
http://dx.doi.org/10.1093/molbev/msy059	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5995194	PMC

July 2018

Transmission of molecularly undetectable circulating parasite clones leads to high infection complexity in mosquitoes post feeding.

Authors:

Lynn Grignard Bronner P Gonçalves Angela M Early Rachel F Daniels Alfred B Tiono Wamdaogo M Guelbéogo Alphonse Ouédraogo Elke M van Veen Kjerstin Lanke Amidou Diarra Issa Nebie Sodiomon B Sirima Geoff A Targett Sarah K Volkman Daniel E Neafsey Dyann F Wirth Teun Bousema Chris Drakeley

Int J Parasitol 2018 07 5;48(8):671-677. Epub 2018 May 5.

Department of Immunology and Infection, London School of Hygiene & Tropical Medicine, London, UK.

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http://dx.doi.org/10.1016/j.ijpara.2018.02.005	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6018601	PMC

July 2018

hmmIBD: software to infer pairwise identity by descent between haploid genotypes.

Authors:

Stephen F Schaffner Aimee R Taylor Wesley Wong Dyann F Wirth Daniel E Neafsey

Malar J 2018 May 15;17(1):196. Epub 2018 May 15.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

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https://malariajournal.biomedcentral.com/articles/10.1186/s1	Publisher Site
http://dx.doi.org/10.1186/s12936-018-2349-7	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952413	PMC

May 2018

Host-mediated selection impacts the diversity of Plasmodium falciparum antigens within infections.

Nat Commun 2018 04 11;9(1):1381. Epub 2018 Apr 11.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

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http://dx.doi.org/10.1038/s41467-018-03807-7	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5895824	PMC

April 2018

Candidate-gene based GWAS identifies reproducible DNA markers for metabolic pyrethroid resistance from standing genetic variation in East African Anopheles gambiae.

Authors:

David Weetman Craig S Wilding Daniel E Neafsey Pie Müller Eric Ochomo Alison T Isaacs Keith Steen Emily J Rippon John C Morgan Henry D Mawejje Daniel J Rigden Loyce M Okedi Martin J Donnelly

Sci Rep 2018 02 13;8(1):2920. Epub 2018 Feb 13.

Department of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, UK.

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http://dx.doi.org/10.1038/s41598-018-21265-5	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811533	PMC

February 2018

Quantitative Proteomic Profiling Reveals Novel Surface Antigens and Possible Vaccine Candidates.

Authors:

Sandra K Nilsson Bark Rushdy Ahmad Kathleen Dantzler Amanda K Lukens Mariana De Niz Matthew J Szucs Xiaoying Jin Joanne Cotton Dietmar Hoffmann Eva Bric-Furlong Ray Oomen Mark Parrington Dan Milner Daniel E Neafsey Steven A Carr Dyann F Wirth Matthias Marti

Mol Cell Proteomics 2018 01 21;17(1):43-60. Epub 2017 Nov 21.

From the ‡Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115;

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http://dx.doi.org/10.1074/mcp.RA117.000076	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5750850	PMC

January 2018

Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent.

Authors:

Aimee R Taylor Stephen F Schaffner Gustavo C Cerqueira Standwell C Nkhoma Timothy J C Anderson Kanlaya Sriprawat Aung Pyae Phyo François Nosten Daniel E Neafsey Caroline O Buckee

PLoS Genet 2017 Oct 27;13(10):e1007065. Epub 2017 Oct 27.

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007065	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5678785	PMC

October 2017

Malaria Genomics in the Era of Eradication.

Authors:

Daniel E Neafsey Sarah K Volkman

Cold Spring Harb Perspect Med 2017 Aug 1;7(8). Epub 2017 Aug 1.

Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115.

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http://dx.doi.org/10.1101/cshperspect.a025544	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5538406	PMC

August 2017

Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance.

Authors:

Gustavo C Cerqueira Ian H Cheeseman Steve F Schaffner Shalini Nair Marina McDew-White Aung Pyae Phyo Elizabeth A Ashley Alexandre Melnikov Peter Rogov Bruce W Birren François Nosten Timothy J C Anderson Daniel E Neafsey

Genome Biol 2017 04 28;18(1):78. Epub 2017 Apr 28.

Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/s130	Publisher Site
http://dx.doi.org/10.1186/s13059-017-1204-4	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5410087	PMC

April 2017

Genetic relatedness analysis reveals the cotransmission of genetically related Plasmodium falciparum parasites in Thiès, Senegal.

Authors:

Wesley Wong Allison D Griggs Rachel F Daniels Stephen F Schaffner Daouda Ndiaye Amy K Bei Awa B Deme Bronwyn MacInnis Sarah K Volkman Daniel L Hartl Daniel E Neafsey Dyann F Wirth

Genome Med 2017 01 24;9(1). Epub 2017 Jan 24.

Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13073-017-0398-0	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5260019	PMC

January 2017

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

Authors:

Hsiao-Han Chang Colin J Worby Adoke Yeka Joaniter Nankabirwa Moses R Kamya Sarah G Staedke Grant Dorsey Maxwell Murphy Daniel E Neafsey Anna E Jeffreys Christina Hubbart Kirk A Rockett Roberto Amato Dominic P Kwiatkowski Caroline O Buckee Bryan Greenhouse

PLoS Comput Biol 2017 01 26;13(1):e1005348. Epub 2017 Jan 26.

Department of Medicine, University of California, San Francisco, San Francisco, California, United States.

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http://dx.doi.org/10.1371/journal.pcbi.1005348	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5300274	PMC

January 2017

Mosquito Vectors and the Globalization of Plasmodium falciparum Malaria.

Authors:

Alvaro Molina-Cruz Martine M Zilversmit Daniel E Neafsey Daniel L Hartl Carolina Barillas-Mury

Annu Rev Genet 2016 Nov 3;50:447-465. Epub 2016 Oct 3.

Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland 20852; email:

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http://dx.doi.org/10.1146/annurev-genet-120215-035211	DOI Listing

November 2016

Diversity-oriented synthesis yields novel multistage antimalarial inhibitors.

Authors:

Nobutaka Kato Eamon Comer Tomoyo Sakata-Kato Arvind Sharma Manmohan Sharma Micah Maetani Jessica Bastien Nicolas M Brancucci Joshua A Bittker Victoria Corey David Clarke Emily R Derbyshire Gillian L Dornan Sandra Duffy Sean Eckley Maurice A Itoe Karin M J Koolen Timothy A Lewis Ping S Lui Amanda K Lukens Emily Lund Sandra March Elamaran Meibalan Bennett C Meier Jacob A McPhail Branko Mitasev Eli L Moss Morgane Sayes Yvonne Van Gessel Mathias J Wawer Takashi Yoshinaga Anne-Marie Zeeman Vicky M Avery Sangeeta N Bhatia John E Burke Flaminia Catteruccia Jon C Clardy Paul A Clemons Koen J Dechering Jeremy R Duvall Michael A Foley Fabian Gusovsky Clemens H M Kocken Matthias Marti Marshall L Morningstar Benito Munoz Daniel E Neafsey Amit Sharma Elizabeth A Winzeler Dyann F Wirth Christina A Scherer Stuart L Schreiber

Nature 2016 Oct 7;538(7625):344-349. Epub 2016 Sep 7.

Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1038/nature19804	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5515376	PMC

October 2016

Genomic Dark Matter Illuminated: Anopheles Y Chromosomes.

Authors:

Seth N Redmond Daniel E Neafsey

Trends Parasitol 2016 08 2;32(8):585-587. Epub 2016 Jun 2.

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://dx.doi.org/10.1016/j.pt.2016.05.008	DOI Listing

August 2016

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax.

Nat Genet 2016 08 27;48(8):953-8. Epub 2016 Jun 27.

Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.

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http://www.nature.com/articles/ng.3588	Publisher Site
http://dx.doi.org/10.1038/ng.3588	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5347536	PMC

August 2016

Role of Plasmodium vivax Duffy-binding protein 1 in invasion of Duffy-null Africans.

Authors:

Karthigayan Gunalan Eugenia Lo Jessica B Hostetler Delenasaw Yewhalaw Jianbing Mu Daniel E Neafsey Guiyun Yan Louis H Miller

Proc Natl Acad Sci U S A 2016 May 17;113(22):6271-6. Epub 2016 May 17.

Laboratory of Malaria and Vector Research, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852;

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http://dx.doi.org/10.1073/pnas.1606113113	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4896682	PMC

May 2016

Evaluation of DISCOVAR de novo using a mosquito sample for cost-effective short-read genome assembly.

Authors:

R Rebecca Love Neil I Weisenfeld David B Jaffe Nora J Besansky Daniel E Neafsey

BMC Genomics 2016 Mar 5;17:187. Epub 2016 Mar 5.

Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, 415 Main St, Cambridge, MA, 02142, USA.

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http://dx.doi.org/10.1186/s12864-016-2531-7	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779211	PMC

March 2016

Genome-Scale Protein Microarray Comparison of Human Antibody Responses in Plasmodium vivax Relapse and Reinfection.

Authors:

Raul Chuquiyauri Douglas M Molina Eli L Moss Ruobing Wang Malcolm J Gardner Kimberly C Brouwer Sonia Torres Robert H Gilman Alejandro Llanos-Cuentas Daniel E Neafsey Philip Felgner Xiaowu Liang Joseph M Vinetz

Am J Trop Med Hyg 2015 Oct 6;93(4):801-9. Epub 2015 Jul 6.

Department of Medicine, Division of Infectious Diseases, University of California San Diego, La Jolla, California; Laboratorio ICEMR-Amazonia, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, Perú; Instituto de Medicina Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Lima, Perú; Antigen Discovery Inc., Irvine, California; Malaria Research Group, Broad Institute of MIT and Harvard University, Cambridge, Massachusetts; Seattle Biomed, Seattle, Washington; Department of Medicine, Division of Global Public Health, University of California San Diego, La Jolla, California; Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland

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http://dx.doi.org/10.4269/ajtmh.15-0232	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596603	PMC

October 2015

Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi.

Authors:

Samuel Assefa Caeul Lim Mark D Preston Craig W Duffy Mridul B Nair Sabir A Adroub Khamisah A Kadir Jonathan M Goldberg Daniel E Neafsey Paul Divis Taane G Clark Manoj T Duraisingh David J Conway Arnab Pain Balbir Singh

Proc Natl Acad Sci U S A 2015 Oct 5;112(42):13027-32. Epub 2015 Oct 5.

Malaria Research Centre, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia;

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http://dx.doi.org/10.1073/pnas.1509534112	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4620865	PMC

October 2015

Adaptive evolution of malaria parasites in French Guiana: Reversal of chloroquine resistance by acquisition of a mutation in pfcrt.

Authors:

Stéphane Pelleau Eli L Moss Satish K Dhingra Béatrice Volney Jessica Casteras Stanislaw J Gabryszewski Sarah K Volkman Dyann F Wirth Eric Legrand David A Fidock Daniel E Neafsey Lise Musset

Proc Natl Acad Sci U S A 2015 Sep 10;112(37):11672-7. Epub 2015 Aug 10.

Laboratoire de parasitologie, WHO Collaborating Center for Surveillance of Anti-Malarial Drug Resistance, Centre National de Référence du paludisme, Laboratoire associé pour la région Antilles-Guyane, Institut Pasteur de la Guyane, 97300 Cayenne, French Guiana;

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http://www.pnas.org/lookup/doi/10.1073/pnas.1507142112	Publisher Site
http://dx.doi.org/10.1073/pnas.1507142112	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4577156	PMC

September 2015

A genomic and evolutionary approach reveals non-genetic drug resistance in malaria.

Authors:

Jonathan D Herman Daniel P Rice Ulf Ribacke Jacob Silterra Amy A Deik Eli L Moss Kate M Broadbent Daniel E Neafsey Michael M Desai Clary B Clish Ralph Mazitschek Dyann F Wirth

Genome Biol 2014 ;15(11):511

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http://dx.doi.org/10.1186/PREACCEPT-1067113631444973	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272547	PMC

July 2015

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Elife 2015 Jul 15;4:e06974. Epub 2015 Jul 15.

Pathogen Genomics Laboratory, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

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https://elifesciences.org/articles/06974	Publisher Site
http://dx.doi.org/10.7554/eLife.06974	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501334	PMC

July 2015

Modeling malaria genomics reveals transmission decline and rebound in Senegal.

Authors:

Rachel F Daniels Stephen F Schaffner Edward A Wenger Joshua L Proctor Hsiao-Han Chang Wesley Wong Nicholas Baro Daouda Ndiaye Fatou Ba Fall Medoune Ndiop Mady Ba Danny A Milner Terrie E Taylor Daniel E Neafsey Sarah K Volkman Philip A Eckhoff Daniel L Hartl Dyann F Wirth

Proc Natl Acad Sci U S A 2015 Jun 4;112(22):7067-72. Epub 2015 May 4.

Departments of Immunology and Infectious Diseases and Broad Institute, Cambridge, MA 02142;

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http://dx.doi.org/10.1073/pnas.1505691112	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460456	PMC

June 2015

Genome-level determination of Plasmodium falciparum blood-stage targets of malarial clinical immunity in the Peruvian Amazon.

Authors:

Katherine J Torres Carlos E Castrillon Eli L Moss Mayuko Saito Roy Tenorio Douglas M Molina Huw Davies Daniel E Neafsey Philip Felgner Joseph M Vinetz Dionicia Gamboa

J Infect Dis 2015 Apr 7;211(8):1342-51. Epub 2014 Nov 7.

Laboratorio de Malaria, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía Institute de Medicina Tropical, Universidad Peruana Cayetano Heredia, Lima.

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http://dx.doi.org/10.1093/infdis/jiu614	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4402338	PMC

April 2015

Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections.

PLoS Negl Trop Dis 2015 Mar 17;9(3):e0003539. Epub 2015 Mar 17.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America; Broad Institute, Cambridge, Massachusetts, United States of America; Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0003539	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4362761	PMC

March 2015

Standardized metadata for human pathogen/vector genomic sequences.

Authors:

Vivien G Dugan Scott J Emrich Gloria I Giraldo-Calderón Omar S Harb Ruchi M Newman Brett E Pickett Lynn M Schriml Timothy B Stockwell Christian J Stoeckert Dan E Sullivan Indresh Singh Doyle V Ward Alison Yao Jie Zheng Tanya Barrett Bruce Birren Lauren Brinkac Vincent M Bruno Elizabet Caler Sinéad Chapman Frank H Collins Christina A Cuomo Valentina Di Francesco Scott Durkin Mark Eppinger Michael Feldgarden Claire Fraser W Florian Fricke Maria Giovanni Matthew R Henn Erin Hine Julie Dunning Hotopp Ilene Karsch-Mizrachi Jessica C Kissinger Eun Mi Lee Punam Mathur Emmanuel F Mongodin Cheryl I Murphy Garry Myers Daniel E Neafsey Karen E Nelson William C Nierman Julia Puzak David Rasko David S Roos Lisa Sadzewicz Joana C Silva Bruno Sobral R Burke Squires Rick L Stevens Luke Tallon Herve Tettelin David Wentworth Owen White Rebecca Will Jennifer Wortman Yun Zhang Richard H Scheuermann

PLoS One 2014 17;9(6):e99979. Epub 2014 Jun 17.

J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America; Department of Pathology, University of California San Diego, San Diego, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0099979	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061050	PMC

February 2015

Immune characterization of Plasmodium falciparum parasites with a shared genetic signature in a region of decreasing transmission.

Authors:

Amy K Bei Ababacar Diouf Kazutoyo Miura Daniel B Larremore Ulf Ribacke Gregory Tullo Eli L Moss Daniel E Neafsey Rachel F Daniels Amir E Zeituni Iguosadolo Nosamiefan Sarah K Volkman Ambroise D Ahouidi Daouda Ndiaye Tandakha Dieye Souleymane Mboup Caroline O Buckee Carole A Long Dyann F Wirth

Infect Immun 2015 Jan 3;83(1):276-85. Epub 2014 Nov 3.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, USA Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA

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http://dx.doi.org/10.1128/IAI.01979-14	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4288878	PMC

January 2015

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics.

Authors:

Michael C Fontaine James B Pease Aaron Steele Robert M Waterhouse Daniel E Neafsey Igor V Sharakhov Xiaofang Jiang Andrew B Hall Flaminia Catteruccia Evdoxia Kakani Sara N Mitchell Yi-Chieh Wu Hilary A Smith R Rebecca Love Mara K Lawniczak Michel A Slotman Scott J Emrich Matthew W Hahn Nora J Besansky

Science 2015 Jan 27;347(6217):1258524. Epub 2014 Nov 27.

Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1126/science.1258524	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380269	PMC

January 2015

Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes.

Authors:

Daniel E Neafsey Robert M Waterhouse Mohammad R Abai Sergey S Aganezov Max A Alekseyev James E Allen James Amon Bruno Arcà Peter Arensburger Gleb Artemov Lauren A Assour Hamidreza Basseri Aaron Berlin Bruce W Birren Stephanie A Blandin Andrew I Brockman Thomas R Burkot Austin Burt Clara S Chan Cedric Chauve Joanna C Chiu Mikkel Christensen Carlo Costantini Victoria L M Davidson Elena Deligianni Tania Dottorini Vicky Dritsou Stacey B Gabriel Wamdaogo M Guelbeogo Andrew B Hall Mira V Han Thaung Hlaing Daniel S T Hughes Adam M Jenkins Xiaofang Jiang Irwin Jungreis Evdoxia G Kakani Maryam Kamali Petri Kemppainen Ryan C Kennedy Ioannis K Kirmitzoglou Lizette L Koekemoer Njoroge Laban Nicholas Langridge Mara K N Lawniczak Manolis Lirakis Neil F Lobo Ernesto Lowy Robert M MacCallum Chunhong Mao Gareth Maslen Charles Mbogo Jenny McCarthy Kristin Michel Sara N Mitchell Wendy Moore Katherine A Murphy Anastasia N Naumenko Tony Nolan Eva M Novoa Samantha O'Loughlin Chioma Oringanje Mohammad A Oshaghi Nazzy Pakpour Philippos A Papathanos Ashley N Peery Michael Povelones Anil Prakash David P Price Ashok Rajaraman Lisa J Reimer David C Rinker Antonis Rokas Tanya L Russell N'Fale Sagnon Maria V Sharakhova Terrance Shea Felipe A Simão Frederic Simard Michel A Slotman Pradya Somboon Vladimir Stegniy Claudio J Struchiner Gregg W C Thomas Marta Tojo Pantelis Topalis José M C Tubio Maria F Unger John Vontas Catherine Walton Craig S Wilding Judith H Willis Yi-Chieh Wu Guiyun Yan Evgeny M Zdobnov Xiaofan Zhou Flaminia Catteruccia George K Christophides Frank H Collins Robert S Cornman Andrea Crisanti Martin J Donnelly Scott J Emrich Michael C Fontaine William Gelbart Matthew W Hahn Immo A Hansen Paul I Howell Fotis C Kafatos Manolis Kellis Daniel Lawson Christos Louis Shirley Luckhart Marc A T Muskavitch José M Ribeiro Michael A Riehle Igor V Sharakhov Zhijian Tu Laurence J Zwiebel Nora J Besansky

Science 2015 Jan 27;347(6217):1258522. Epub 2014 Nov 27.

Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, 317 Galvin Life Sciences Building, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1126/science.1258522	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380271	PMC

January 2015

COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data.

Authors:

Kevin Galinsky Clarissa Valim Arielle Salmier Benoit de Thoisy Lise Musset Eric Legrand Aubrey Faust Mary Lynn Baniecki Daouda Ndiaye Rachel F Daniels Daniel L Hartl Pardis C Sabeti Dyann F Wirth Sarah K Volkman Daniel E Neafsey

Malar J 2015 Jan 19;14. Epub 2015 Jan 19.

Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

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http://dx.doi.org/10.1186/1475-2875-14-4	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417311	PMC

January 2015

VAR2CSA signatures of high Plasmodium falciparum parasitemia in the placenta.

Authors:

Eduard Rovira-Vallbona Isadora Monteiro Azucena Bardají Elisa Serra-Casas Daniel E Neafsey Diana Quelhas Clarissa Valim Pedro Alonso Carlota Dobaño Jaume Ordi Clara Menéndez Alfredo Mayor

PLoS One 2013 25;8(7):e69753. Epub 2013 Jul 25.

Barcelona Centre for International Health Research, CRESIB, Hospital Clínic-Universitat de Barcelona, Barcelona, Spain.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0069753	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3723727	PMC

March 2014

Genetic dissection of Anopheles gambiae gut epithelial responses to Serratia marcescens.

Authors:

Stavros Stathopoulos Daniel E Neafsey Mara K N Lawniczak Marc A T Muskavitch George K Christophides

PLoS Pathog 2014 Mar 6;10(3):e1003897. Epub 2014 Mar 6.

Department of Life Sciences, Imperial College London, London, United Kingdom; The Cyprus Institute, Nicosia, Cyprus.

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http://dx.doi.org/10.1371/journal.ppat.1003897	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3946313	PMC

March 2014

Malaria life cycle intensifies both natural selection and random genetic drift.

Authors:

Hsiao-Han Chang Eli L Moss Daniel J Park Daouda Ndiaye Souleymane Mboup Sarah K Volkman Pardis C Sabeti Dyann F Wirth Daniel E Neafsey Daniel L Hartl

Proc Natl Acad Sci U S A 2013 Dec 20;110(50):20129-34. Epub 2013 Nov 20.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138.

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http://dx.doi.org/10.1073/pnas.1319857110	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3864301	PMC

December 2013

Genetic surveillance detects both clonal and epidemic transmission of malaria following enhanced intervention in Senegal.

Authors:

Rachel Daniels Hsiao-Han Chang Papa Diogoye Séne Danny C Park Daniel E Neafsey Stephen F Schaffner Elizabeth J Hamilton Amanda K Lukens Daria Van Tyne Souleymane Mboup Pardis C Sabeti Daouda Ndiaye Dyann F Wirth Daniel L Hartl Sarah K Volkman

PLoS One 2013 4;8(4):e60780. Epub 2013 Apr 4.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0060780	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617153	PMC

November 2013

The evolution of the Anopheles 16 genomes project.

Authors:

Daniel E Neafsey George K Christophides Frank H Collins Scott J Emrich Michael C Fontaine William Gelbart Matthew W Hahn Paul I Howell Fotis C Kafatos Daniel Lawson Marc A T Muskavitch Robert M Waterhouse Louise J Williams Nora J Besansky

G3 (Bethesda) 2013 Jul 8;3(7):1191-4. Epub 2013 Jul 8.

Broad Institute, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1534/g3.113.006247	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704246	PMC

July 2013

Genome sequencing sheds light on emerging drug resistance in malaria parasites.

Authors:

Daniel E Neafsey

Nat Genet 2013 Jun;45(6):589-90

Broad Institute, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.2648	DOI Listing

June 2013

Patterns of genomic differentiation between ecologically differentiated M and S forms of Anopheles gambiae in West and Central Africa.

Authors:

Kyanne R Reidenbach Daniel E Neafsey Carlo Costantini N'fale Sagnon Frédéric Simard Gregory J Ragland Scott P Egan Jeffrey L Feder Marc A T Muskavitch Nora J Besansky

Genome Biol Evol 2012 ;4(12):1202-12

Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA.

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http://dx.doi.org/10.1093/gbe/evs095	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3542583	PMC

May 2013

Breakdown in the process of incipient speciation in Anopheles gambiae.

Authors:

Davis C Nwakanma Daniel E Neafsey Musa Jawara Majidah Adiamoh Emily Lund Amabelia Rodrigues Kovana M Loua Lassana Konate Ngayo Sy Ibrahima Dia T Samson Awolola Marc A T Muskavitch David J Conway

Genetics 2013 Apr 18;193(4):1221-31. Epub 2013 Jan 18.

Medical Research Council Laboratories, Banjul, The Gambia.

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http://www.genetics.org/cgi/doi/10.1534/genetics.112.148718	Publisher Site
http://dx.doi.org/10.1534/genetics.112.148718	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3606099	PMC

April 2013

‘Big data’ from shrinking pathogen populations.

Authors:

Daniel E Neafsey

Mol Ecol 2013 Jan;22(2):271-2

Broad Institute, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1111/mec.12175	DOI Listing

January 2013

SNP genotyping identifies new signatures of selection in a deep sample of West African Plasmodium falciparum malaria parasites.

Authors:

Alfred Amambua-Ngwa Daniel J Park Sarah K Volkman Kayla G Barnes Amy K Bei Amanda K Lukens Papa Sene Daria Van Tyne Daouda Ndiaye Dyann F Wirth David J Conway Daniel E Neafsey Stephen F Schaffner

Mol Biol Evol 2012 Nov 11;29(11):3249-53. Epub 2012 Jun 11.

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http://dx.doi.org/10.1093/molbev/mss151	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472499	PMC

November 2012

Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population.

Authors:

Hsiao-Han Chang Daniel J Park Kevin J Galinsky Stephen F Schaffner Daouda Ndiaye Omar Ndir Souleymane Mboup Roger C Wiegand Sarah K Volkman Pardis C Sabeti Dyann F Wirth Daniel E Neafsey Daniel L Hartl

Mol Biol Evol 2012 Nov 24;29(11):3427-39. Epub 2012 Jun 24.

Department of Organismic and Evolutionary Biology, Harvard University.

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http://dx.doi.org/10.1093/molbev/mss161	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3472501	PMC

November 2012

The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum.

Authors:

Daniel E Neafsey Kevin Galinsky Rays H Y Jiang Lauren Young Sean M Sykes Sakina Saif Sharvari Gujja Jonathan M Goldberg Sarah Young Qiandong Zeng Sinéad B Chapman Aditya P Dash Anupkumar R Anvikar Patrick L Sutton Bruce W Birren Ananias A Escalante John W Barnwell Jane M Carlton

Nat Genet 2012 Sep 5;44(9):1046-50. Epub 2012 Aug 5.

Broad Institute, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/ng.2373	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3432710	PMC

September 2012

Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite.

Authors:

Daniel J Park Amanda K Lukens Daniel E Neafsey Stephen F Schaffner Hsiao-Han Chang Clarissa Valim Ulf Ribacke Daria Van Tyne Kevin Galinsky Meghan Galligan Justin S Becker Daouda Ndiaye Souleymane Mboup Roger C Wiegand Daniel L Hartl Pardis C Sabeti Dyann F Wirth Sarah K Volkman

Proc Natl Acad Sci U S A 2012 Aug 23;109(32):13052-7. Epub 2012 Jul 23.

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1073/pnas.1210585109	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3420184	PMC

August 2012

Harnessing genomics and genome biology to understand malaria biology.

Authors:

Sarah K Volkman Daniel E Neafsey Stephen F Schaffner Daniel J Park Dyann F Wirth

Nat Rev Genet 2012 Apr 12;13(5):315-28. Epub 2012 Apr 12.

Department of Immunology and Infectious Disease, Harvard School of Public Health, 665 Huntington Avenue, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nrg3187	DOI Listing

April 2012

Application of genomics to field investigations of malaria by the international centers of excellence for malaria research.

Authors:

Sarah K Volkman Daouda Ndiaye Mahamadou Diakite Ousmane A Koita Davis Nwakanma Rachel F Daniels Daniel J Park Daniel E Neafsey Marc A T Muskavitch Donald J Krogstad Pardis C Sabeti Daniel L Hartl Dyann F Wirth

Acta Trop 2012 Mar 13;121(3):324-32. Epub 2011 Dec 13.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.actatropica.2011.12.002	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294120	PMC

March 2012

Human cerebral malaria and Plasmodium falciparum genotypes in Malawi.

Malar J 2012 Feb 7;11:35. Epub 2012 Feb 7.

Department of Pathology, Brigham and Women's Hospital, 75 Francis Street, Amory 3, Boston, MA 02115, USA.

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http://dx.doi.org/10.1186/1475-2875-11-35	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3295736	PMC

February 2012

'Next-generation' sequencing becomes 'now-generation'.

Authors:

Daniel E Neafsey Brian J Haas

Genome Biol 2011 18;12(3):303. Epub 2011 Mar 18.

Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1186/gb-2011-12-3-303	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129669	PMC

January 2012

Hybrid selection for sequencing pathogen genomes from clinical samples.

Authors:

Alexandre Melnikov Kevin Galinsky Peter Rogov Timothy Fennell Daria Van Tyne Carsten Russ Rachel Daniels Kayla G Barnes James Bochicchio Daouda Ndiaye Papa D Sene Dyann F Wirth Chad Nusbaum Sarah K Volkman Bruce W Birren Andreas Gnirke Daniel E Neafsey

Genome Biol 2011 Aug 11;12(8):R73. Epub 2011 Aug 11.

Genome Sequencing and Analysis Program, Broad Institute, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1186/gb-2011-12-8-r73	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245613	PMC

August 2011

Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum.

PLoS Genet 2011 Apr 21;7(4):e1001383. Epub 2011 Apr 21.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1001383	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3080868	PMC

April 2011

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control.

Genome Res 2010 Jul 1;20(7):938-46. Epub 2010 Jun 1.

Broad Institute, Cambridge, Massachusetts 02142, USA.

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http://dx.doi.org/10.1101/gr.103911.109	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2892095	PMC

July 2010

Population genetic analysis of large sequence polymorphisms in Plasmodium falciparum blood-stage antigens.

Authors:

Ambroise D Ahouidi Amy K Bei Daniel E Neafsey Ousmane Sarr Sarah Volkman Dan Milner Janet Cox-Singh Marcelo U Ferreira Omar Ndir Zul Premji Souleymane Mboup Manoj T Duraisingh

Infect Genet Evol 2010 Mar 30;10(2):200-6. Epub 2009 Nov 30.

Laboratory of Bacteriology and Virology, Le Dantec Hospital, and Laboratory of Parasitology, Faculty of Medicine and Pharmacy, Cheikh Anta Diop University, Dakar BP 7325, Senegal.

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https://linkinghub.elsevier.com/retrieve/pii/S15671348090026	Publisher Site
http://dx.doi.org/10.1016/j.meegid.2009.11.008	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829370	PMC

March 2010

Complex selection on 5' splice sites in intron-rich organisms.

Authors:

Manuel Irimia Scott William Roy Daniel E Neafsey Josep F Abril Jordi Garcia-Fernandez Eugene V Koonin

Genome Res 2009 Nov 10;19(11):2021-7. Epub 2009 Sep 10.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1101/gr.089276.108	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775602	PMC

November 2009

Evolutionary roles of upstream open reading frames in mediating gene regulation in fungi.

Authors:

Heather M Hood Daniel E Neafsey James Galagan Matthew S Sachs

Annu Rev Microbiol 2009 ;63:385-409

Department of Science and Engineering, Oregon Health & Science University, Beaverton, Oregon 97006, USA.

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http://dx.doi.org/10.1146/annurev.micro.62.081307.162835	DOI Listing

October 2009

Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.

Genome Res 2009 Oct 28;19(10):1722-31. Epub 2009 Aug 28.

Department of Plant and Microbial Biology, University of California, Berkeley, 94720, USA.

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http://dx.doi.org/10.1101/gr.087551.108	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765278	PMC

October 2009

Stepwise acquisition of pyrimethamine resistance in the malaria parasite.

Authors:

Elena R Lozovsky Thanat Chookajorn Kyle M Brown Mallika Imwong Philip J Shaw Sumalee Kamchonwongpaisan Daniel E Neafsey Daniel M Weinreich Daniel L Hartl

Proc Natl Acad Sci U S A 2009 Jul 8;106(29):12025-30. Epub 2009 Jul 8.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1073/pnas.0905922106	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2715478	PMC

July 2009

Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence.

Genome Biol 2008 15;9(12):R171. Epub 2008 Dec 15.

Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1186/gb-2008-9-12-r171	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2646275	PMC

March 2009

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking.

Authors:

Rachel Daniels Sarah K Volkman Danny A Milner Nira Mahesh Daniel E Neafsey Daniel J Park David Rosen Elaine Angelino Pardis C Sabeti Dyann F Wirth Roger C Wiegand

Malar J 2008 Oct 29;7:223. Epub 2008 Oct 29.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1186/1475-2875-7-223	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2584654	PMC

October 2008

Cross-kingdom patterns of alternative splicing and splice recognition.

Authors:

Abigail M McGuire Matthew D Pearson Daniel E Neafsey James E Galagan

Genome Biol 2008 5;9(3):R50. Epub 2008 Mar 5.

The Broad Institute of MIT and Harvard, Cambridge Center, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1186/gb-2008-9-3-r50	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2397502	PMC

June 2008

Complex selection on intron size in Cryptococcus neoformans.

Authors:

Stephanie S Hughes Cedric O Buckley Daniel E Neafsey

Mol Biol Evol 2008 Feb 2;25(2):247-53. Epub 2008 Jan 2.

Microbial Analysis Group, Broad Institute of MIT and Harvard, Cambridge.

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http://dx.doi.org/10.1093/molbev/msm220	DOI Listing

February 2008

Mechanisms of intron gain and loss in Cryptococcus.

Authors:

Thomas J Sharpton Daniel E Neafsey James E Galagan John W Taylor

Genome Biol 2008 Jan 30;9(1):R24. Epub 2008 Jan 30.

Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, CA 94720, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2	Publisher Site
http://dx.doi.org/10.1186/gb-2008-9-1-r24	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2395259	PMC