Publications by authors named "Daniel E Neafsey"

Vaccine 2021 Jan 8. Epub 2021 Jan 8.

Immunology Core, Malaria Biologics Branch, WRAIR, Silver Spring, MD 20910, USA. Electronic address:

PLoS Negl Trop Dis 2020 Dec 14;14(12):e0008962. Epub 2020 Dec 14.

Harvard TH Chan School of Public Health, Boston, Massachusetts, United States of America.

Proc Natl Acad Sci U S A 2020 Dec 1;117(50):31583-31590. Epub 2020 Dec 1.

Department of Biological Sciences, University of Notre Dame, South Bend, IN 46556;

Mol Ecol 2020 Nov 30. Epub 2020 Nov 30.

Harvard T.H. Chan School of Public Health, Boston, MA, USA.

PLoS Genet 2020 11 16;16(11):e1009101. Epub 2020 Nov 16.

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, Massachusetts, USA.

PLoS Negl Trop Dis 2020 10 28;14(10):e0008808. Epub 2020 Oct 28.

Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.

Sci Rep 2020 08 14;10(1):13847. Epub 2020 Aug 14.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02144, USA.

Elife 2020 05 12;9. Epub 2020 May 12.

Laboratoire de parasitologie, Centre Nationale de Référence du Paludisme, World Health Organization Collaborating Center for surveillance of antimalarial drug resistance, Institut Pasteur de la Guyane, Cayenne, French Guiana.

Malar J 2020 Mar 30;19(1):134. Epub 2020 Mar 30.

Laboratory of Parasitology and Mycology, Aristide le Dantec Hospital, Cheikh Anta Diop University, Dakar, Senegal.

BMC Biol 2020 03 12;18(1):26. Epub 2020 Mar 12.

Harvard TH Chan School of Public Health, Boston, MA, USA.

Nat Commun 2019 12 6;10(1):5595. Epub 2019 Dec 6.

Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, 10400, Thailand.

Science 2019 11;366(6465):594-599

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

Malar J 2019 Jul 1;18(1):219. Epub 2019 Jul 1.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

Genetics 2019 08 17;212(4):1337-1351. Epub 2019 Jun 17.

Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, Massachusetts 02115.

Sci Transl Med 2019 06;11(495)

Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health, Boston, MA, USA.

BMC Med 2018 12 28;16(1):241. Epub 2018 Dec 28.

Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA.

Nature 2018 11 14;563(7732):501-507. Epub 2018 Nov 14.

Laboratory of Neurogenetics and Behavior, The Rockefeller University, New York, NY, USA.

Proc Natl Acad Sci U S A 2018 12 12;115(50):12799-12804. Epub 2018 Nov 12.

Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115;

Wellcome Open Res 2018 17;3:70. Epub 2018 Oct 17.

Wellcome Centre for Molecular Parasitology, Institute of Infection, Immunity & Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.

BMC Med 2018 10 18;16(1):190. Epub 2018 Oct 18.

Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA.

Malar J 2018 May 15;17(1):196. Epub 2018 May 15.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

Int J Parasitol 2018 07 5;48(8):671-677. Epub 2018 May 5.

Department of Immunology and Infection, London School of Hygiene & Tropical Medicine, London, UK.

Mol Biol Evol 2018 07;35(7):1678-1689

Broad Institute of MIT and Harvard, Cambridge, MA.

Nat Commun 2018 04 11;9(1):1381. Epub 2018 Apr 11.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

Sci Rep 2018 02 13;8(1):2920. Epub 2018 Feb 13.

Department of Vector Biology, Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, UK.

Mol Cell Proteomics 2018 01 21;17(1):43-60. Epub 2017 Nov 21.

From the ‡Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115;

PLoS Genet 2017 Oct 27;13(10):e1007065. Epub 2017 Oct 27.

Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America.

Genome Biol 2017 04 28;18(1):78. Epub 2017 Apr 28.

Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

Cold Spring Harb Perspect Med 2017 Aug 1;7(8). Epub 2017 Aug 1.

Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115.

PLoS Comput Biol 2017 01 26;13(1):e1005348. Epub 2017 Jan 26.

Department of Medicine, University of California, San Francisco, San Francisco, California, United States.

Genome Med 2017 01 24;9(1). Epub 2017 Jan 24.

Department of Immunology and Infectious Diseases, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA.

Nature 2016 Oct 7;538(7625):344-349. Epub 2016 Sep 7.

Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, Massachusetts 02142, USA.

Annu Rev Genet 2016 Nov 3;50:447-465. Epub 2016 Oct 3.

Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland 20852; email:

Nat Genet 2016 08 27;48(8):953-8. Epub 2016 Jun 27.

Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.

Trends Parasitol 2016 08 2;32(8):585-587. Epub 2016 Jun 2.

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

Proc Natl Acad Sci U S A 2016 May 17;113(22):6271-6. Epub 2016 May 17.

Laboratory of Malaria and Vector Research, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852;

BMC Genomics 2016 Mar 5;17:187. Epub 2016 Mar 5.

Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, 415 Main St, Cambridge, MA, 02142, USA.

Proc Natl Acad Sci U S A 2015 Oct 5;112(42):13027-32. Epub 2015 Oct 5.

Malaria Research Centre, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia;

Proc Natl Acad Sci U S A 2015 Sep 10;112(37):11672-7. Epub 2015 Aug 10.

Laboratoire de parasitologie, WHO Collaborating Center for Surveillance of Anti-Malarial Drug Resistance, Centre National de Référence du paludisme, Laboratoire associé pour la région Antilles-Guyane, Institut Pasteur de la Guyane, 97300 Cayenne, French Guiana;

Elife 2015 Jul 15;4:e06974. Epub 2015 Jul 15.

Pathogen Genomics Laboratory, Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.

Am J Trop Med Hyg 2015 Oct 6;93(4):801-9. Epub 2015 Jul 6.

Department of Medicine, Division of Infectious Diseases, University of California San Diego, La Jolla, California; Laboratorio ICEMR-Amazonia, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, Perú; Instituto de Medicina Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Lima, Perú; Antigen Discovery Inc., Irvine, California; Malaria Research Group, Broad Institute of MIT and Harvard University, Cambridge, Massachusetts; Seattle Biomed, Seattle, Washington; Department of Medicine, Division of Global Public Health, University of California San Diego, La Jolla, California; Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland

Proc Natl Acad Sci U S A 2015 Jun 4;112(22):7067-72. Epub 2015 May 4.

Departments of Immunology and Infectious Diseases and Broad Institute, Cambridge, MA 02142;

PLoS Negl Trop Dis 2015 Mar 17;9(3):e0003539. Epub 2015 Mar 17.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America; Broad Institute, Cambridge, Massachusetts, United States of America; Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.

Malar J 2015 Jan 19;14. Epub 2015 Jan 19.

Broad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.

Science 2015 Jan 27;347(6217):1258522. Epub 2014 Nov 27.

Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, 317 Galvin Life Sciences Building, Notre Dame, IN 46556, USA.

Science 2015 Jan 27;347(6217):1258524. Epub 2014 Nov 27.

Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. Eck Institute for Global Health, University of Notre Dame, Notre Dame, IN 46556, USA.

Genome Biol 2014 ;15(11):511

J Infect Dis 2015 Apr 7;211(8):1342-51. Epub 2014 Nov 7.

Laboratorio de Malaria, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía Institute de Medicina Tropical, Universidad Peruana Cayetano Heredia, Lima.

Infect Immun 2015 Jan 3;83(1):276-85. Epub 2014 Nov 3.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, USA Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA

PLoS One 2014 17;9(6):e99979. Epub 2014 Jun 17.

J. Craig Venter Institute, Rockville, Maryland, and La Jolla, California, United States of America; Department of Pathology, University of California San Diego, San Diego, California, United States of America.

PLoS Pathog 2014 Mar 6;10(3):e1003897. Epub 2014 Mar 6.

Department of Life Sciences, Imperial College London, London, United Kingdom; The Cyprus Institute, Nicosia, Cyprus.

Proc Natl Acad Sci U S A 2013 Dec 20;110(50):20129-34. Epub 2013 Nov 20.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138.

PLoS One 2013 25;8(7):e69753. Epub 2013 Jul 25.

Barcelona Centre for International Health Research, CRESIB, Hospital Clínic-Universitat de Barcelona, Barcelona, Spain.

Nat Genet 2013 Jun;45(6):589-90

Broad Institute, Cambridge, Massachusetts, USA.

G3 (Bethesda) 2013 Jul 8;3(7):1191-4. Epub 2013 Jul 8.

Broad Institute, Cambridge, Massachusetts 02142, USA.

PLoS One 2013 4;8(4):e60780. Epub 2013 Apr 4.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.

Mol Ecol 2013 Jan;22(2):271-2

Broad Institute, Cambridge, MA 02142, USA.

Genetics 2013 Apr 18;193(4):1221-31. Epub 2013 Jan 18.

Medical Research Council Laboratories, Banjul, The Gambia.

Genome Biol Evol 2012 ;4(12):1202-12

Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA.

Nat Genet 2012 Sep 5;44(9):1046-50. Epub 2012 Aug 5.

Broad Institute, Cambridge, Massachusetts, USA.

Proc Natl Acad Sci U S A 2012 Aug 23;109(32):13052-7. Epub 2012 Jul 23.

Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

Mol Biol Evol 2012 Nov 24;29(11):3427-39. Epub 2012 Jun 24.

Department of Organismic and Evolutionary Biology, Harvard University.

Mol Biol Evol 2012 Nov 11;29(11):3249-53. Epub 2012 Jun 11.

Nat Rev Genet 2012 Apr 12;13(5):315-28. Epub 2012 Apr 12.

Department of Immunology and Infectious Disease, Harvard School of Public Health, 665 Huntington Avenue, Boston, Massachusetts 02115, USA.

Malar J 2012 Feb 7;11:35. Epub 2012 Feb 7.

Department of Pathology, Brigham and Women's Hospital, 75 Francis Street, Amory 3, Boston, MA 02115, USA.

Acta Trop 2012 Mar 13;121(3):324-32. Epub 2011 Dec 13.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115, USA.

Genome Biol 2011 Aug 11;12(8):R73. Epub 2011 Aug 11.

Genome Sequencing and Analysis Program, Broad Institute, Cambridge, MA 02142, USA.

PLoS Genet 2011 Apr 21;7(4):e1001383. Epub 2011 Apr 21.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts, United States of America.

Genome Biol 2011 18;12(3):303. Epub 2011 Mar 18.

Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA.

Genome Res 2010 Jul 1;20(7):938-46. Epub 2010 Jun 1.

Broad Institute, Cambridge, Massachusetts 02142, USA.

Infect Genet Evol 2010 Mar 30;10(2):200-6. Epub 2009 Nov 30.

Laboratory of Bacteriology and Virology, Le Dantec Hospital, and Laboratory of Parasitology, Faculty of Medicine and Pharmacy, Cheikh Anta Diop University, Dakar BP 7325, Senegal.

Genome Res 2009 Nov 10;19(11):2021-7. Epub 2009 Sep 10.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain.

Genome Res 2009 Oct 28;19(10):1722-31. Epub 2009 Aug 28.

Department of Plant and Microbial Biology, University of California, Berkeley, 94720, USA.

Proc Natl Acad Sci U S A 2009 Jul 8;106(29):12025-30. Epub 2009 Jul 8.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

Annu Rev Microbiol 2009 ;63:385-409

Department of Science and Engineering, Oregon Health & Science University, Beaverton, Oregon 97006, USA.

Genome Biol 2008 15;9(12):R171. Epub 2008 Dec 15.

Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.

Malar J 2008 Oct 29;7:223. Epub 2008 Oct 29.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.

Genome Biol 2008 5;9(3):R50. Epub 2008 Mar 5.

The Broad Institute of MIT and Harvard, Cambridge Center, Cambridge, MA 02142, USA.

Genome Biol 2008 Jan 30;9(1):R24. Epub 2008 Jan 30.

Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, CA 94720, USA.

Mol Biol Evol 2008 Feb 2;25(2):247-53. Epub 2008 Jan 2.

Microbial Analysis Group, Broad Institute of MIT and Harvard, Cambridge.

BMC Evol Biol 2007 Jul 18;7:119. Epub 2007 Jul 18.

Microbial Analysis Group, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.

Mol Biol Evol 2007 Aug 9;24(8):1744-51. Epub 2007 May 9.

Microbial Analysis Group, Broad Institute of MIT and Harvard, Cambridge, MA, USA.

Mol Biol Evol 2007 May 20;24(5):1140-8. Epub 2007 Mar 20.

Allan Wilson Centre for Molecular Ecology and Evolution, Massey University, Palmerston North, New Zealand.

Mol Biol Evol 2007 Apr 22;24(4):939-47. Epub 2007 Jan 22.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Harvard University, USA.

Nat Genet 2007 Jan 10;39(1):113-9. Epub 2006 Dec 10.

Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, Massachusetts 02115, USA.

Mol Biol Evol 2005 Jul 27;22(7):1621-6. Epub 2005 Apr 27.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.

Gene 2005 May 7;350(2):161-71. Epub 2005 Apr 7.

Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

Mol Biol Evol 2004 Dec 1;21(12):2310-8. Epub 2004 Sep 1.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA.

Genome Res 2003 May;13(5):821-30

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA.