Dan Maclean

Dan Maclean

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Dan Maclean

Dan Maclean

Publications by authors named "Dan Maclean"

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High-resolution expression profiling of selected gene sets during plant immune activation.

Plant Biotechnol J 2020 Jan 8. Epub 2020 Jan 8.

The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.

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http://dx.doi.org/10.1111/pbi.13327DOI Listing
January 2020

A workflow for simplified analysis of ATAC-cap-seq data in R.

Gigascience 2018 07;7(7)

Sainsbury Laboratory, Norwich Research Park, Norwich, UK, NR4 7UH.

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http://dx.doi.org/10.1093/gigascience/giy080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047409PMC
July 2018

An automated quantitative image analysis tool for the identification of microtubule patterns in plants.

Traffic 2017 10 16;18(10):683-693. Epub 2017 Aug 16.

Norwich Research Park, The Sainsbury Laboratory, Norwich, UK.

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http://dx.doi.org/10.1111/tra.12505DOI Listing
October 2017

blastjs: a BLAST+ wrapper for Node.js.

BMC Res Notes 2016 Feb 27;9:130. Epub 2016 Feb 27.

Bioinformatics Group, The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.

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http://dx.doi.org/10.1186/s13104-016-1938-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4769840PMC
February 2016

bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby.

Bioinformatics 2015 Aug 29;31(15):2565-7. Epub 2015 Mar 29.

The Sainsbury Laboratory and.

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http://dx.doi.org/10.1093/bioinformatics/btv178DOI Listing
August 2015

Physical and chemical properties of pomegranate fruit accessions from Croatia.

Food Chem 2015 Jun 5;177:53-60. Epub 2015 Jan 5.

Department of Horticulture, University of Georgia, 2360 Rainwater Road, Tifton, GA 31793, USA. Electronic address:

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http://dx.doi.org/10.1016/j.foodchem.2014.12.102DOI Listing
June 2015

Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs.

Bioinformatics 2015 Mar 24;31(5):642-6. Epub 2014 Oct 24.

The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK.

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http://dx.doi.org/10.1093/bioinformatics/btu706DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341063PMC
March 2015

Mapping mutations in plant genomes with the user-friendly web application CandiSNP.

Plant Methods 2014 30;10(1):41. Epub 2014 Dec 30.

The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH UK.

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http://dx.doi.org/10.1186/s13007-014-0041-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4301057PMC
January 2015

The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.

Cell Host Microbe 2014 Nov 12;16(5):605-15. Epub 2014 Nov 12.

The Sainsbury Laboratory, Norwich Research Park, NR4 7UH Norwich, UK. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2014.10.007DOI Listing
November 2014

Out of the woods. Ash dieback and the future of emergent pathogenomics.

Authors:
Dan MacLean

Mol Plant Pathol 2014 Jan;15(1):1-4

The Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.

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http://dx.doi.org/10.1111/mpp.12086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6638840PMC
January 2014

Using false discovery rates to benchmark SNP-callers in next-generation sequencing projects.

Sci Rep 2013 ;3:1512

Department of Infectious Disease Epidemiology, St Mary's Hospital, Imperial College London, London, UK.

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http://dx.doi.org/10.1038/srep01512DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3604800PMC
September 2013

Changing the rules of the game.

Authors:
Dan Maclean

Elife 2013 Aug 13;2:e01294. Epub 2013 Aug 13.

is the head of bioinformatics at the Sainsbury Laboratory , Norwich , United Kingdom , and an honorary senior lecturer in the Department of Computer Science , University of East Anglia , Norwich , United Kingdom

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http://dx.doi.org/10.7554/eLife.01294DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3743132PMC
August 2013

A novel instrument to delineate varietal and harvest effects on blueberry fruit texture during storage.

J Sci Food Agric 2011 Jul 28;91(9):1653-8. Epub 2011 Mar 28.

University of Georgia, Department of Biological and Agricultural Engineering, 2329 Rainwater Road, Tifton, GA 31794, USA.

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http://dx.doi.org/10.1002/jsfa.4362DOI Listing
July 2011

High-throughput confocal imaging of intact live tissue enables quantification of membrane trafficking in Arabidopsis.

Plant Physiol 2010 Nov 14;154(3):1096-104. Epub 2010 Sep 14.

Department of Plant Microbe Interactions, Max-Planck Institut für Pflanzenzüchtungsforschung, Cologne, Germany.

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http://dx.doi.org/10.1104/pp.110.160325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2971591PMC
November 2010

A toolkit for analysing large-scale plant small RNA datasets.

Bioinformatics 2008 Oct 19;24(19):2252-3. Epub 2008 Aug 19.

School of Computing Sciences, School of Biological Sciences, University of East Anglia, Norwich NR47TJ, UK.

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http://dx.doi.org/10.1093/bioinformatics/btn428DOI Listing
October 2008

Postharvest variation in apple (Malus x domestica Borkh.) Flavonoids following harvest, storage, and 1-MCP treatment.

J Agric Food Chem 2006 Feb;54(3):870-8

Department of Plant Agriculture, University of Guelph, Guelph, Ontario, N1G 2W1, Canada.

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http://dx.doi.org/10.1021/jf0525075DOI Listing
February 2006

Oxidative stress and bioindicators of reproductive function in pulp and paper mill effluent exposed white sucker.

Toxicol Sci 2003 Jul 2;74(1):51-65. Epub 2003 May 2.

Department of Zoology, University of Guelph, Guelph, Ontario, Canada N1G 2W1.

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http://dx.doi.org/10.1093/toxsci/kfg114DOI Listing
July 2003