Daming Zhu

Daming Zhu

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Daming Zhu

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In Situ Formation of Hierarchical Bismuth Nanodots/Graphene Nanoarchitectures for Ultrahigh-Rate and Durable Potassium-Ion Storage.

Small 2020 Jan 11;16(2):e1905789. Epub 2019 Dec 11.

Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.

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http://dx.doi.org/10.1002/smll.201905789DOI Listing
January 2020

Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear Linear Programming-Rounding.

J Comput Biol 2020 Jan 3. Epub 2020 Jan 3.

School of Computer Science and Technology, Shandong University, Qingdao, China.

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http://dx.doi.org/10.1089/cmb.2019.0288DOI Listing
January 2020

DTA-SiST: de novo transcriptome assembly by using simplified suffix trees.

BMC Bioinformatics 2019 Dec 24;20(Suppl 25):698. Epub 2019 Dec 24.

Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA.

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http://dx.doi.org/10.1186/s12859-019-3272-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929406PMC
December 2019

PASA: IDENTIFYING MORE CREDIBLE STRUCTURAL VARIANTS OF HEDOU12.

IEEE/ACM Trans Comput Biol Bioinform 2019 Aug 14. Epub 2019 Aug 14.

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http://dx.doi.org/10.1109/TCBB.2019.2934463DOI Listing
August 2019

In Situ Studies of 30% Li-Doped BiFeO Conversion Type Lithium Battery Electrodes.

ACS Omega 2019 Jan 30;4(1):2344-2352. Epub 2019 Jan 30.

Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Pudong New Area, Shanghai 201204, People's Republic of China.

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http://dx.doi.org/10.1021/acsomega.8b02418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6648275PMC
January 2019

A 2-approximation algorithm for the contig-based genomic scaffold filling problem.

J Bioinform Comput Biol 2018 12;16(6):1850022

† Gianforte School of Computing, Montana State University, Bozeman, MT 59717, USA.

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https://www.worldscientific.com/doi/abs/10.1142/S02197200185
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http://dx.doi.org/10.1142/S0219720018500221DOI Listing
December 2018

A graph-based filtering method for top-down mass spectral identification.

BMC Genomics 2018 Sep 24;19(Suppl 7):666. Epub 2018 Sep 24.

School of Computer Science and Technology, Shandong University, 1500, Shun Hua Lu, Jinan, 250101, China.

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http://dx.doi.org/10.1186/s12864-018-5026-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157290PMC
September 2018

Few-Layer Antimonene: Anisotropic Expansion and Reversible Crystalline-Phase Evolution Enable Large-Capacity and Long-Life Na-Ion Batteries.

ACS Nano 2018 02 3;12(2):1887-1893. Epub 2018 Feb 3.

Wuhan National Laboratory for Optoelectronics, School of Optical and Electronic Information, Huazhong University of Science and Technology , Wuhan 430074, China.

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http://dx.doi.org/10.1021/acsnano.7b08714DOI Listing
February 2018

IsoTree: A New Framework for De novo Transcriptome Assembly from RNA-seq Reads.

IEEE/ACM Trans Comput Biol Bioinform 2018 Feb 21. Epub 2018 Feb 21.

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http://dx.doi.org/10.1109/TCBB.2018.2808350DOI Listing
February 2018

Determination of Protein Content in Alhydrogel-Based Vaccines by O-Phthalaldehyde Assay.

Methods Mol Biol 2017 ;1494:263-271

Laboratory of Malaria Immunology and Vaccinology, National Institutes of Allergy and Infectious Disease, National Institutes of Health, 5640 Fishers Lane, Rockville, MD, 20852, USA.

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http://dx.doi.org/10.1007/978-1-4939-6445-1_19DOI Listing
January 2018

Direct Growth of Graphene on Silicon by Metal-Free Chemical Vapor Deposition.

Nanomicro Lett 2018 8;10(2):20. Epub 2017 Dec 8.

1Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201204 People's Republic of China.

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http://dx.doi.org/10.1007/s40820-017-0173-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6199066PMC
December 2017

A Spectrum Graph-Based Protein Sequence Filtering Algorithm for Proteoform Identification by Top-Down Mass Spectrometry.

Proceedings (IEEE Int Conf Bioinformatics Biomed) 2017 Nov 18;2017:222-229. Epub 2017 Dec 18.

Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis.

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http://dx.doi.org/10.1109/BIBM.2017.8217653DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831147PMC
November 2017

Facile Construction of Novel 3-Dimensional Graphene/Amorphous Porous Carbon Hybrids with Enhanced Lithium Storage Properties.

ACS Appl Mater Interfaces 2017 Oct 29;9(40):35191-35199. Epub 2017 Sep 29.

Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201204, P. R. China.

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http://dx.doi.org/10.1021/acsami.7b08320DOI Listing
October 2017

In Situ Observation of Thermal Proton Transport through Graphene Layers.

ACS Nano 2017 09 17;11(9):8970-8977. Epub 2017 Aug 17.

Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201204, China.

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http://dx.doi.org/10.1021/acsnano.7b03359DOI Listing
September 2017

Accelerated and long term stability study of Pfs25-EPA conjugates adjuvanted with Alhydrogel®.

Vaccine 2017 05 4;35(24):3232-3238. Epub 2017 May 4.

Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1016/j.vaccine.2017.04.067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5501246PMC
May 2017

Anomalous thermoelectricity in strained Bi2Te3 films.

Sci Rep 2016 09 7;6:32661. Epub 2016 Sep 7.

National Laboratory for Infrared Physics, Shanghai Institute of Technical Physics, Chinese Academy of Sciences, Shanghai 200083, China.

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http://dx.doi.org/10.1038/srep32661DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5013394PMC
September 2016

Fourier-Transform Ghost Imaging with Hard X Rays.

Phys Rev Lett 2016 Sep 7;117(11):113901. Epub 2016 Sep 7.

University of Science and Technology of China, Hefei 230026, China.

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http://dx.doi.org/10.1103/PhysRevLett.117.113901DOI Listing
September 2016

QS-21: A Potent Vaccine Adjuvant.

Nat Prod Chem Res 2016 Apr 31;3(4). Epub 2015 Jul 31.

Animal Parasitic Diseases Laboratory, Agricultural Research Service, USDA, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.4172/2329-6836.1000e113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874334PMC
April 2016

A Dynamic Programming Algorithm For (1,2)-Exemplar Breakpoint Distance.

J Comput Biol 2015 Jul 3;22(7):666-76. Epub 2015 Jun 3.

2 Department of Computer Science, City University of Hong Kong , Kowloon, Hong Kong .

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http://dx.doi.org/10.1089/cmb.2014.0200DOI Listing
July 2015

Characteristics and prediction of RNA structure.

Biomed Res Int 2014 6;2014:690340. Epub 2014 Jul 6.

Computational Biology Institute, George Washington University, Ashburn, VA 20147, USA.

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http://dx.doi.org/10.1155/2014/690340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109605PMC
March 2015

Characteristics of equipartition for RNA structure.

BMC Proc 2014 13;8(Suppl 6 Proceedings of the Great Lakes Bioinformatics Confer):S3. Epub 2014 Oct 13.

Computational Biology Institute, George Washington University, Ashburn, Virginia 20147, USA.

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http://dx.doi.org/10.1186/1753-6561-8-S6-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4202180PMC
November 2014

Fabrication of thickness controllable free-standing sandwich-structured hybrid carbon film for high-rate and high-power supercapacitor.

Sci Rep 2014 Nov 14;4:7050. Epub 2014 Nov 14.

School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei. 430074, PR China.

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http://dx.doi.org/10.1038/srep07050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231341PMC
November 2014

An exact algorithm for the zero exemplar breakpoint distance problem.

IEEE/ACM Trans Comput Biol Bioinform 2013 Nov-Dec;10(6):1469-77

City University of Hong Kong, Hong Kong.

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http://ieeexplore.ieee.org/document/6636301/
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http://dx.doi.org/10.1109/TCBB.2013.127DOI Listing
September 2014

An improved approximation algorithm for scaffold filling to maximize the common adjacencies.

IEEE/ACM Trans Comput Biol Bioinform 2013 Jul-Aug;10(4):905-13

Montana State University, Bozeman.

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http://dx.doi.org/10.1109/TCBB.2013.100DOI Listing
August 2014

Dynamic matching algorithm for viral structure prediction.

Pak J Pharm Sci 2014 Jul;27(4 Suppl):1001-4

School of Computer Science and Technology and Shandong Provincial Key Laboratory of Digital Media Technology, Shandong University of Finance and Economics, Jinan, China.

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July 2014

Phase 1 study in malaria naïve adults of BSAM2/Alhydrogel®+CPG 7909, a blood stage vaccine against P. falciparum malaria.

PLoS One 2012 4;7(10):e46094. Epub 2012 Oct 4.

Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health (NIAID/NIH), Rockville, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0046094PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3464250PMC
April 2013

Determination of protein concentration for protein-protein conjugates using ultraviolet absorption.

J Immunol Methods 2013 Jan 23;387(1-2):317-21. Epub 2012 Oct 23.

Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1016/j.jim.2012.10.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3529773PMC
January 2013

Protein-protein binding site identification by enumerating the configurations.

BMC Bioinformatics 2012 Jul 6;13:158. Epub 2012 Jul 6.

Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong.

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http://dx.doi.org/10.1186/1471-2105-13-158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3478195PMC
July 2012

Efficient extraction of vaccines formulated in aluminum hydroxide gel by including surfactants in the extraction buffer.

Vaccine 2012 Jan 19;30(2):189-94. Epub 2011 Nov 19.

Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1016/j.vaccine.2011.11.025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246088PMC
January 2012

Long term stability of a recombinant Plasmodium falciparum AMA1 malaria vaccine adjuvanted with Montanide(®) ISA 720 and stabilized with glycine.

Vaccine 2011 May 8;29(20):3640-5. Epub 2011 Apr 8.

Laboratory of Malaria Immunology and Vaccinology, National Institute of Allergy and Infectious Disease, National Institutes of Health, 5640 Fishers Lane, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1016/j.vaccine.2011.03.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3089892PMC
May 2011

Immunization of female BALB/c mice with Neospora cyclophilin and/or NcSRS2 elicits specific antibody response and prevents against challenge infection by Neospora caninum.

Vaccine 2011 Mar 31;29(13):2392-9. Epub 2011 Jan 31.

Animal Parasitic Diseases Laboratory, Beltsville Agricultural Research Center, USDA/ARS, Beltsville, MD 20705, USA.

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http://dx.doi.org/10.1016/j.vaccine.2011.01.041DOI Listing
March 2011

Algorithms for sorting unsigned linear genomes by the DCJ operations.

Bioinformatics 2011 Feb 6;27(3):311-6. Epub 2010 Dec 6.

Department of Computer Science, Montana State University, Bozeman, MT 59717, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq674DOI Listing
February 2011

A large pheochromocytoma with invasion of multiple local organs.

J Clin Hypertens (Greenwich) 2011 Jan;13(1):60-4

Department of Cardiology, Christiana Care Health System, Newark, DE, USA.

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http://doi.wiley.com/10.1111/j.1751-7176.2010.00353.x
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http://dx.doi.org/10.1111/j.1751-7176.2010.00353.xDOI Listing
January 2011

Phase 1 safety and immunogenicity trial of the Plasmodium falciparum blood-stage malaria vaccine AMA1-C1/ISA 720 in Australian adults.

Vaccine 2010 Mar 4;28(10):2236-2242. Epub 2010 Jan 4.

Malaria Vaccine Development Branch (MVDB), National Institute of Allergy and Infectious Disease, National Institutes of Health (NIAID/NIH), Rockville, MD, United States.

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http://dx.doi.org/10.1016/j.vaccine.2009.12.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847846PMC
March 2010

Use of o-phthalaldehyde assay to determine protein contents of Alhydrogel-based vaccines.

Vaccine 2009 Oct 4;27(43):6054-9. Epub 2009 Aug 4.

Malaria Vaccine Development Branch, National Institute of Allergy and Infectious Disease, National Institutes of Health, 5640 Fishers Lane, Rockville, MD 20852, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0264410X0901090
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http://dx.doi.org/10.1016/j.vaccine.2009.07.067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753737PMC
October 2009

Development of a Direct Alhydrogel Formulation Immunoassay (DAFIA).

J Immunol Methods 2009 May 27;344(1):73-8. Epub 2009 Mar 27.

Malaria Vaccine Development Branch, National Institute of Allergy and Infectious Disease, National Institutes of Health, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1016/j.jim.2009.03.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712229PMC
May 2009

DNA solution based on sequence alignment to the Minimum Spanning Tree problem.

Int J Bioinform Res Appl 2008 ;4(2):188-200

Department of Computer Science and Technology, Shandong University at Weihai, Weihai, China.

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http://dx.doi.org/10.1504/IJBRA.2008.018345DOI Listing
September 2008

Phase 1 trial of AMA1-C1/Alhydrogel plus CPG 7909: an asexual blood-stage vaccine for Plasmodium falciparum malaria.

PLoS One 2008 Aug 13;3(8):e2940. Epub 2008 Aug 13.

Malaria Vaccine Development Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002940PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2491586PMC
August 2008

A (1.5 + epsilon)-approximation algorithm for unsigned translocation distance.

IEEE/ACM Trans Comput Biol Bioinform 2008 Jan-Mar;5(1):56-66

Shangdong University, Ji'nan, P.R. China.

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http://dx.doi.org/10.1109/TCBB.2007.70216DOI Listing
May 2008

MeV X-ray imaging using plastic scintillating fiber area detectors: a simulation study.

Appl Radiat Isot 2008 Feb 23;66(2):162-7. Epub 2007 Aug 23.

Department of Modern Physics, University of Science and Technology of China, 230026 Hefei, China.

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http://dx.doi.org/10.1016/j.apradiso.2007.08.008DOI Listing
February 2008

Relationship between glycemic status and progression of carotid intima-media thickness during treatment with combined statin and extended-release niacin in ARBITER 2.

Vasc Health Risk Manag 2007 ;3(1):159-64

Cardiology Service, Walter Reed Army Medical Center, 6900 Georgia Avenue, NW, Building 2, Room 4A34, Washington, DC 20307-5001, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1994036PMC
August 2007

A quantitative slot blot assay for host cell protein impurities in recombinant proteins expressed in E. coli.

J Immunol Methods 2005 Nov 18;306(1-2):40-50. Epub 2005 Aug 18.

Malaria Vaccine Development Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD 20852, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S002217590500243
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http://dx.doi.org/10.1016/j.jim.2005.07.021DOI Listing
November 2005

Determining residual host cell antigen levels in purified recombinant proteins by slot blot and scanning laser densitometry.

Methods Mol Biol 2005 ;308:233-42

Biochemical Assay Development and Quality Control, Malaria Vaccine Development Branch, National Institute of Allergy and Infectious Diseases, Rockville, MD, USA.

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http://link.springer.com/10.1385/1-59259-922-2:233
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http://dx.doi.org/10.1385/1-59259-922-2:233DOI Listing
September 2005

Inhibition of protein kinase C promotes neuronal survival in low potassium through an Akt-dependent pathway.

Neurotox Res 2004 ;6(4):281-9

Department of Neurology and Neuroscience, Uniformed Services University of the Health Sciences, Bethesda, MD 20814, USA.

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http://dx.doi.org/10.1007/bf03033438DOI Listing
April 2005

Montanide ISA 720 vaccines: quality control of emulsions, stability of formulated antigens, and comparative immunogenicity of vaccine formulations.

Vaccine 2005 Mar;23(19):2530-9

Malaria Vaccine Development Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, 5640 Fishers Lane, Twinbrook I Room 1118, Rockville, MD 20852, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0264410X0400709
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http://dx.doi.org/10.1016/j.vaccine.2004.08.049DOI Listing
March 2005

CTRD: a fast applet for computing signed translocation distance between genomes.

Bioinformatics 2004 Nov 16;20(17):3256-7. Epub 2004 Jun 16.

Department of Computer Science, Peking University, Beijing, 100871, P.R. China.

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http://dx.doi.org/10.1093/bioinformatics/bth356DOI Listing
November 2004

Niacin noncompetitively inhibits DGAT2 but not DGAT1 activity in HepG2 cells.

J Lipid Res 2004 Oct 16;45(10):1835-45. Epub 2004 Jul 16.

Atherosclerosis Research Center, Department of Veterans Affairs Healthcare System, Long Beach, CA, USA.

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http://dx.doi.org/10.1194/jlr.M300403-JLR200DOI Listing
October 2004

Role of brain-derived neurotrophic factor and NF-kappaB in neuronal plasticity and survival: From genes to phenotype.

Restor Neurol Neurosci 2004 ;22(2):121-30

Department of Neurology, Uniformed Services University of the Health Sciences, Bethesda, MD, USA.

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September 2004

Effect of gemfibrozil on apolipoprotein B secretion and diacylglycerol acyltransferase activity in human hepatoblastoma (HepG2) cells.

Atherosclerosis 2002 Oct;164(2):221-8

Cholesterol Research Center, Long Beach Department of Veterans Affairs Healthcare System and University of California, Irvine, 5901 E. Seventh Street (11-111I), Long Beach, CA 90822, USA.

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http://dx.doi.org/10.1016/s0021-9150(02)00060-6DOI Listing
October 2002