Publications by authors named "Daifeng Wang"

36Publications

ECMarker: interpretable machine learning model identifies gene expression biomarkers predicting clinical outcomes and reveals molecular mechanisms of human disease in early stages.

Bioinformatics 2020 Nov 6. Epub 2020 Nov 6.

Department of Biostatistics and Medical Informatics, University of Wisconsin - Madison, Madison, WI 53706, USA.

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November 2020

Varmole: A biologically drop-connect deep neural network model for prioritizing disease risk variants and genes.

Bioinformatics 2020 Oct 8. Epub 2020 Oct 8.

Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI, USA.

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October 2020

RGS6 Mediates Effects of Voluntary Running on Adult Hippocampal Neurogenesis.

Cell Rep 2020 08;32(5):107997

Waisman Center, University of Wisconsin-Madison, Madison, WI 53705, USA; Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705, USA. Electronic address:

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August 2020

Multiview learning for understanding functional multiomics.

PLoS Comput Biol 2020 04 2;16(4):e1007677. Epub 2020 Apr 2.

Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

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April 2020

Comparing Technological Development and Biological Evolution from a Network Perspective.

Cell Syst 2020 03;10(3):219-222

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA; Department of Computer Science, Yale University, New Haven, CT 06520, USA; Department of Statistics and Data Science, Yale University, New Haven, CT 06520, USA. Electronic address:

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March 2020

ManiNetCluster: a novel manifold learning approach to reveal the functional links between gene networks.

BMC Genomics 2019 Dec 30;20(Suppl 12):1003. Epub 2019 Dec 30.

Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, 53726, WI, USA.

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December 2019

Decoupling of Nrf2 Expression Promotes Mesenchymal State Maintenance in Non-Small Cell Lung Cancer.

Cancers (Basel) 2019 Oct 2;11(10). Epub 2019 Oct 2.

Departments of Pathology, Stony Brook University School of Medicine, Stony Brook, NY 11794, USA.

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October 2019

Pulse SILAC Approaches to the Measurement of Cellular Dynamics.

Adv Exp Med Biol 2019 ;1140:575-583

Biological Mass Spectrometry Center, Stony Brook University School of Medicine, Stony Brook, NY, USA.

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September 2019

Heme degradation enzyme biliverdin IXβ reductase is required for stem cell glutamine metabolism.

Biochem J 2018 03 29;475(6):1211-1223. Epub 2018 Mar 29.

Department of Medicine, Stony Brook University, Stony Brook, NY 11794, U.S.A.

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March 2018

Comparative gene co-expression network analysis of epithelial to mesenchymal transition reveals lung cancer progression stages.

BMC Cancer 2017 12 6;17(1):830. Epub 2017 Dec 6.

Stony Brook Cancer Center, Stony Brook Medicine, Stony Brook, NY, USA.

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December 2017

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks.

PLoS Comput Biol 2016 Oct 19;12(10):e1005146. Epub 2016 Oct 19.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America.

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October 2016