Publications by authors named "Daichi Shigemizu"

35Publications

Identification of potential blood biomarkers for early diagnosis of Alzheimer's disease through RNA sequencing analysis.

Alzheimers Res Ther 2020 07 16;12(1):87. Epub 2020 Jul 16.

Medical Genome Center, National Center for Geriatrics and Gerontology, 7-430 Morioka-cho, Obu, 474-8511, Aichi, Japan.

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http://dx.doi.org/10.1186/s13195-020-00654-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367375PMC
July 2020

Bigram-PGK: phosphoglycerylation prediction using the technique of bigram probabilities of position specific scoring matrix.

BMC Mol Cell Biol 2019 Dec 20;20(Suppl 2):57. Epub 2019 Dec 20.

Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University (TMDU), Tokyo, 113-8510, Japan.

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http://dx.doi.org/10.1186/s12860-019-0240-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923822PMC
December 2019

A comparison of machine learning classifiers for dementia with Lewy bodies using miRNA expression data.

BMC Med Genomics 2019 10 30;12(1):150. Epub 2019 Oct 30.

Laboratory Chief, Division of Genomic Medicine, Medical Genome Center, National Center for Geriatrics and Gerontology, 7-430 Morioka-cho, Obu, Aichi, 474-8511, Japan.

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http://dx.doi.org/10.1186/s12920-019-0607-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6822471PMC
October 2019

DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture.

Sci Rep 2019 08 6;9(1):11399. Epub 2019 Aug 6.

Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.

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http://dx.doi.org/10.1038/s41598-019-47765-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684600PMC
August 2019

GlyStruct: glycation prediction using structural properties of amino acid residues.

BMC Bioinformatics 2019 Feb 4;19(Suppl 13):547. Epub 2019 Feb 4.

Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Tokyo, Japan.

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https://bmcbioinformatics.biomedcentral.com/articles/10.1186
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http://dx.doi.org/10.1186/s12859-018-2547-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394324PMC
February 2019

The prediction models for postoperative overall survival and disease-free survival in patients with breast cancer.

Cancer Med 2017 Jul 24;6(7):1627-1638. Epub 2017 May 24.

Department of Medical Science Mathematics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan.

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http://dx.doi.org/10.1002/cam4.1092DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5504310PMC
July 2017

Stepwise iterative maximum likelihood clustering approach.

BMC Bioinformatics 2016 Aug 24;17(1):319. Epub 2016 Aug 24.

RIKEN Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.

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http://dx.doi.org/10.1186/s12859-016-1184-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995791PMC
August 2016

Hierarchical Maximum Likelihood Clustering Approach.

IEEE Trans Biomed Eng 2017 01 24;64(1):112-122. Epub 2016 Mar 24.

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http://dx.doi.org/10.1109/TBME.2016.2542212DOI Listing
January 2017

Performance comparison of four commercial human whole-exome capture platforms.

Sci Rep 2015 Aug 3;5:12742. Epub 2015 Aug 3.

Laboratory for Medical Science Mathematics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.

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http://dx.doi.org/10.1038/srep12742DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4522667PMC
August 2015

Exome Analyses of Long QT Syndrome Reveal Candidate Pathogenic Mutations in Calmodulin-Interacting Genes.

PLoS One 2015 1;10(7):e0130329. Epub 2015 Jul 1.

Laboratory for Cardiovascular Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan; Department of Human Genetics and Disease Diversity, Tokyo Medical and Dental University Graduate School of Medical and Dental Sciences, Tokyo, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0130329PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4488844PMC
April 2016

Assessing the clinical utility of a genetic risk score constructed using 49 susceptibility alleles for type 2 diabetes in a Japanese population.

J Clin Endocrinol Metab 2013 Oct 16;98(10):E1667-73. Epub 2013 Aug 16.

Laboratory for Endocrinology, Metabolism, and Kidney Diseases, RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1210/jc.2013-1642DOI Listing
October 2013

Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer.

PLoS Comput Biol 2012 Feb 9;8(2):e1002347. Epub 2012 Feb 9.

Bioinformatics Program, Boston University, Boston, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1002347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3276504PMC
February 2012

Network-based analysis and characterization of adverse drug-drug interactions.

J Chem Inf Model 2011 Nov 11;51(11):2977-85. Epub 2011 Oct 11.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1021/ci200367wDOI Listing
November 2011

PathPred: an enzyme-catalyzed metabolic pathway prediction server.

Nucleic Acids Res 2010 Jul 30;38(Web Server issue):W138-43. Epub 2010 Apr 30.

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1093/nar/gkq318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896155PMC
July 2010

Characterization and classification of adverse drug interactions.

Genome Inform 2010 Jan;22:167-75

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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January 2010

Extraction and analysis of chemical modification patterns in drug development.

J Chem Inf Model 2009 Apr;49(4):1122-9

Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://pubs.acs.org/doi/abs/10.1021/ci8003804
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http://dx.doi.org/10.1021/ci8003804DOI Listing
April 2009