Publications by authors named "Cyriac Kandoth"

38Publications

GNAQ Mutations in Diffuse and Solitary Choroidal Hemangiomas.

Ophthalmology 2019 05 8;126(5):759-763. Epub 2018 Dec 8.

Memorial Sloan-Kettering Cancer Center, New York, New York; Weill Cornell Medical Center, New York, New York.

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https://linkinghub.elsevier.com/retrieve/pii/S01616420183258
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http://dx.doi.org/10.1016/j.ophtha.2018.12.011DOI Listing
May 2019

Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer.

Cell 2018 04;173(2):515-528.e17

Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA; Department of Genetics and Development, Columbia University Medical Center, New York, NY 10032, USA; Department of Urology, Columbia University Medical Center, New York, NY 10032, USA; Department of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00928674183029
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http://dx.doi.org/10.1016/j.cell.2018.03.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5890941PMC
April 2018

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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http://dx.doi.org/10.1038/ncomms10001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682041PMC
December 2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol 2015 Jul 9;11(7):e1004274. Epub 2015 Jul 9.

The Genome Institute, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497734PMC
July 2015

Transcriptomic Responses of the Heart and Brain to Anoxia in the Western Painted Turtle.

PLoS One 2015 6;10(7):e0131669. Epub 2015 Jul 6.

Department of Biology, Saint Louis University, St. Louis, Missouri, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131669PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4493013PMC
March 2016

Integrative genome-wide analysis of the determinants of RNA splicing in kidney renal clear cell carcinoma.

Pac Symp Biocomput 2015 :44-55

Computational Biology Center, Memorial Kettering Cancer Center, New York, NY 10044, U.S.A.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333684PMC
April 2016

Integrated analysis of germline and somatic variants in ovarian cancer.

Nat Commun 2014 ;5:3156

1] The Genome Institute, Washington University, St. Louis, Missouri 63108, USA [2] Department of Genetics, Washington University, St. Louis, Missouri 63108, USA [3] Siteman Cancer Center, Washington University, St. Louis, Missouri 63108, USA [4] Department of Medicine, Washington University, St. Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/ncomms4156DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4025965PMC
March 2016

Comprehensive identification of mutational cancer driver genes across 12 tumor types.

Sci Rep 2013 Oct 2;3:2650. Epub 2013 Oct 2.

1] Research Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Dr. Aiguader 88, Barcelona, Spain [2].

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http://dx.doi.org/10.1038/srep02650DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3788361PMC
October 2013

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.

N Engl J Med 2013 05 1;368(22):2059-74. Epub 2013 May 1.

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http://dx.doi.org/10.1056/NEJMoa1301689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3767041PMC
May 2013

A framework for automated enrichment of functionally significant inverted repeats in whole genomes.

BMC Bioinformatics 2010 Oct 7;11 Suppl 6:S20. Epub 2010 Oct 7.

Department of Computer Science, Missouri University of Science and Technology, Rolla, MO 65409, USA.

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http://dx.doi.org/10.1186/1471-2105-11-S6-S20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3026368PMC
October 2010

Validation of an NSP-based (negative selection pattern) gene family identification strategy.

BMC Bioinformatics 2008 Aug 12;9 Suppl 9:S2. Epub 2008 Aug 12.

Biological Sciences Department, Missouri S&T, Rolla, MO 65409, USA.

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http://dx.doi.org/10.1186/1471-2105-9-S9-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2537573PMC
August 2008