Cyriac Kandoth

Cyriac Kandoth

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Cyriac Kandoth

Cyriac Kandoth

Publications by authors named "Cyriac Kandoth"

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35Publications

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Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer.

Cell 2018 Apr;173(2):515-528.e17

Department of Medicine, Columbia University Medical Center, New York, NY 10032, USA; Department of Genetics and Development, Columbia University Medical Center, New York, NY 10032, USA; Department of Urology, Columbia University Medical Center, New York, NY 10032, USA; Department of Systems Biology, Columbia University Medical Center, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University Medical Center, New York, NY 10032, USA. Electronic address:

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April 2018

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.

Cell Syst 2018 Mar;6(3):271-281.e7

Department of Medicine, McDonnell Genome Institute, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO 63110, USA.

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March 2018

Integrative genome-wide analysis of the determinants of RNA splicing in kidney renal clear cell carcinoma.

Pac Symp Biocomput 2015 :44-55

Computational Biology Center, Memorial Kettering Cancer Center, New York, NY 10044, U.S.A.

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April 2016

Integrated analysis of germline and somatic variants in ovarian cancer.

Nat Commun 2014 ;5:3156

1] The Genome Institute, Washington University, St. Louis, Missouri 63108, USA [2] Department of Genetics, Washington University, St. Louis, Missouri 63108, USA [3] Siteman Cancer Center, Washington University, St. Louis, Missouri 63108, USA [4] Department of Medicine, Washington University, St. Louis, Missouri 63108, USA.

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March 2016

Transcriptomic Responses of the Heart and Brain to Anoxia in the Western Painted Turtle.

PLoS One 2015 6;10(7):e0131669. Epub 2015 Jul 6.

Department of Biology, Saint Louis University, St. Louis, Missouri, United States of America.

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March 2016

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.

Nat Biotechnol 2016 Feb 30;34(2):155-63. Epub 2015 Nov 30.

Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, New York, USA.

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February 2016

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

Nat Commun 2015 Dec 9;6:10001. Epub 2015 Dec 9.

CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

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December 2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol 2015 Jul 9;11(7):e1004274. Epub 2015 Jul 9.

The Genome Institute, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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July 2015

Comprehensive identification of mutational cancer driver genes across 12 tumor types.

Sci Rep 2013 Oct 2;3:2650. Epub 2013 Oct 2.

1] Research Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Dr. Aiguader 88, Barcelona, Spain [2].

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October 2013

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.

N Engl J Med 2013 05 1;368(22):2059-74. Epub 2013 May 1.

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May 2013

MuSiC: identifying mutational significance in cancer genomes.

Genome Res 2012 Aug 3;22(8):1589-98. Epub 2012 Jul 3.

The Genome Institute, Washington University, St. Louis, Missouri 63108, USA.

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August 2012

PathScan: a tool for discerning mutational significance in groups of putative cancer genes.

Bioinformatics 2011 Jun 14;27(12):1595-602. Epub 2011 Apr 14.

The Genome Institute, Washington University, St Louis, MO 63108, USA.

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June 2011

A framework for automated enrichment of functionally significant inverted repeats in whole genomes.

BMC Bioinformatics 2010 Oct 7;11 Suppl 6:S20. Epub 2010 Oct 7.

Department of Computer Science, Missouri University of Science and Technology, Rolla, MO 65409, USA.

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October 2010

Validation of an NSP-based (negative selection pattern) gene family identification strategy.

BMC Bioinformatics 2008 Aug 12;9 Suppl 9:S2. Epub 2008 Aug 12.

Biological Sciences Department, Missouri S&T, Rolla, MO 65409, USA.

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August 2008