Cynthia Pfannkoch

Cynthia Pfannkoch

UNVERIFIED PROFILE

Are you Cynthia Pfannkoch?   Register this Author

Register author
Cynthia Pfannkoch

Cynthia Pfannkoch

Publications by authors named "Cynthia Pfannkoch"

Are you Cynthia Pfannkoch?   Register this Author

9Publications

631Reads

15Profile Views

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

Cell-free cloning using phi29 DNA polymerase.

Proc Natl Acad Sci U S A 2005 Nov 14;102(48):17332-6. Epub 2005 Nov 14.

Synthetic Biology Group, The J. Craig Venter Institute, Rockville, MD 20850, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0508809102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1283157PMC
November 2005

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Generating a synthetic genome by whole genome assembly: phiX174 bacteriophage from synthetic oligonucleotides.

Proc Natl Acad Sci U S A 2003 Dec 2;100(26):15440-5. Epub 2003 Dec 2.

Institute for Biological Energy Alternatives, 1901 Research Boulevard, Suite 600, Rockville, MD 20850, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.2237126100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC307586PMC
December 2003

The genome sequence of the malaria mosquito Anopheles gambiae.

Authors:
Robert A Holt G Mani Subramanian Aaron Halpern Granger G Sutton Rosane Charlab Deborah R Nusskern Patrick Wincker Andrew G Clark José M C Ribeiro Ron Wides Steven L Salzberg Brendan Loftus Mark Yandell William H Majoros Douglas B Rusch Zhongwu Lai Cheryl L Kraft Josep F Abril Veronique Anthouard Peter Arensburger Peter W Atkinson Holly Baden Veronique de Berardinis Danita Baldwin Vladimir Benes Jim Biedler Claudia Blass Randall Bolanos Didier Boscus Mary Barnstead Shuang Cai Angela Center Kabir Chaturverdi George K Christophides Mathew A Chrystal Michele Clamp Anibal Cravchik Val Curwen Ali Dana Art Delcher Ian Dew Cheryl A Evans Michael Flanigan Anne Grundschober-Freimoser Lisa Friedli Zhiping Gu Ping Guan Roderic Guigo Maureen E Hillenmeyer Susanne L Hladun James R Hogan Young S Hong Jeffrey Hoover Olivier Jaillon Zhaoxi Ke Chinnappa Kodira Elena Kokoza Anastasios Koutsos Ivica Letunic Alex Levitsky Yong Liang Jhy-Jhu Lin Neil F Lobo John R Lopez Joel A Malek Tina C McIntosh Stephan Meister Jason Miller Clark Mobarry Emmanuel Mongin Sean D Murphy David A O'Brochta Cynthia Pfannkoch Rong Qi Megan A Regier Karin Remington Hongguang Shao Maria V Sharakhova Cynthia D Sitter Jyoti Shetty Thomas J Smith Renee Strong Jingtao Sun Dana Thomasova Lucas Q Ton Pantelis Topalis Zhijian Tu Maria F Unger Brian Walenz Aihui Wang Jian Wang Mei Wang Xuelan Wang Kerry J Woodford Jennifer R Wortman Martin Wu Alison Yao Evgeny M Zdobnov Hongyu Zhang Qi Zhao Shaying Zhao Shiaoping C Zhu Igor Zhimulev Mario Coluzzi Alessandra della Torre Charles W Roth Christos Louis Francis Kalush Richard J Mural Eugene W Myers Mark D Adams Hamilton O Smith Samuel Broder Malcolm J Gardner Claire M Fraser Ewan Birney Peer Bork Paul T Brey J Craig Venter Jean Weissenbach Fotis C Kafatos Frank H Collins Stephen L Hoffman

Science 2002 Oct;298(5591):129-49

Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA.

View Article

Download full-text PDF

Source
http://ccb.jhu.edu/people/salzberg/docs/Anopheles-gambiae-re
Web Search
http://www.sciencemag.org/cgi/doi/10.1126/science.1076181
Publisher Site
http://dx.doi.org/10.1126/science.1076181DOI Listing
October 2002

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.

Authors:
Richard J Mural Mark D Adams Eugene W Myers Hamilton O Smith George L Gabor Miklos Ron Wides Aaron Halpern Peter W Li Granger G Sutton Joe Nadeau Steven L Salzberg Robert A Holt Chinnappa D Kodira Fu Lu Lin Chen Zuoming Deng Carlos C Evangelista Weiniu Gan Thomas J Heiman Jiayin Li Zhenya Li Gennady V Merkulov Natalia V Milshina Ashwinikumar K Naik Rong Qi Bixiong Chris Shue Aihui Wang Jian Wang Xin Wang Xianghe Yan Jane Ye Shibu Yooseph Qi Zhao Liansheng Zheng Shiaoping C Zhu Kendra Biddick Randall Bolanos Arthur L Delcher Ian M Dew Daniel Fasulo Michael J Flanigan Daniel H Huson Saul A Kravitz Jason R Miller Clark M Mobarry Knut Reinert Karin A Remington Qing Zhang Xiangqun H Zheng Deborah R Nusskern Zhongwu Lai Yiding Lei Wenyan Zhong Alison Yao Ping Guan Rui-Ru Ji Zhiping Gu Zhen-Yuan Wang Fei Zhong Chunlin Xiao Chia-Chien Chiang Mark Yandell Jennifer R Wortman Peter G Amanatides Suzanne L Hladun Eric C Pratts Jeffery E Johnson Kristina L Dodson Kerry J Woodford Cheryl A Evans Barry Gropman Douglas B Rusch Eli Venter Mei Wang Thomas J Smith Jarrett T Houck Donald E Tompkins Charles Haynes Debbie Jacob Soo H Chin David R Allen Carl E Dahlke Robert Sanders Kelvin Li Xiangjun Liu Alexander A Levitsky William H Majoros Quan Chen Ashley C Xia John R Lopez Michael T Donnelly Matthew H Newman Anna Glodek Cheryl L Kraft Marc Nodell Feroze Ali Hui-Jin An Danita Baldwin-Pitts Karen Y Beeson Shuang Cai Mark Carnes Amy Carver Parris M Caulk Angela Center Yen-Hui Chen Ming-Lai Cheng My D Coyne Michelle Crowder Steven Danaher Lionel B Davenport Raymond Desilets Susanne M Dietz Lisa Doup Patrick Dullaghan Steven Ferriera Carl R Fosler Harold C Gire Andres Gluecksmann Jeannine D Gocayne Jonathan Gray Brit Hart Jason Haynes Jeffery Hoover Tim Howland Chinyere Ibegwam Mena Jalali David Johns Leslie Kline Daniel S Ma Steven MacCawley Anand Magoon Felecia Mann David May Tina C McIntosh Somil Mehta Linda Moy Mee C Moy Brian J Murphy Sean D Murphy Keith A Nelson Zubeda Nuri Kimberly A Parker Alexandre C Prudhomme Vinita N Puri Hina Qureshi John C Raley Matthew S Reardon Megan A Regier Yu-Hui C Rogers Deanna L Romblad Jakob Schutz John L Scott Richard Scott Cynthia D Sitter Michella Smallwood Arlan C Sprague Erin Stewart Renee V Strong Ellen Suh Karena Sylvester Reginald Thomas Ni Ni Tint Christopher Tsonis Gary Wang George Wang Monica S Williams Sherita M Williams Sandra M Windsor Keriellen Wolfe Mitchell M Wu Jayshree Zaveri Kabir Chaturvedi Andrei E Gabrielian Zhaoxi Ke Jingtao Sun Gangadharan Subramanian J Craig Venter Cynthia M Pfannkoch Mary Barnstead Lisa D Stephenson

Science 2002 May;296(5573):1661-71

Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1069193DOI Listing
May 2002