Cydney B Nielsen

Cydney B Nielsen

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Cydney B Nielsen

Cydney B Nielsen

Publications by authors named "Cydney B Nielsen"

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18Publications

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E-scape: interactive visualization of single-cell phylogenetics and cancer evolution.

Nat Methods 2017 05;14(6):549-550

Department of Molecular Oncology, British Columbia Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1038/nmeth.4303DOI Listing
May 2017

ChAsE: chromatin analysis and exploration tool.

Bioinformatics 2016 11 4;32(21):3324-3326. Epub 2016 Jul 4.

Graphics Usability and Visualization Lab, Simon Fraser University, Burnaby, Canada Visualization and Data Analysis Lab, Faculty of Computer Science, University of Vienna, Wien, Austria.

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http://dx.doi.org/10.1093/bioinformatics/btw382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5079470PMC
November 2016

Clonal genotype and population structure inference from single-cell tumor sequencing.

Nat Methods 2016 07 16;13(7):573-6. Epub 2016 May 16.

Department of Molecular Oncology, BC Cancer Agency, Vancouver, British Columbia, Canada.

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http://dx.doi.org/10.1038/nmeth.3867DOI Listing
July 2016

Visualization: A Mind-Machine Interface for Discovery.

Authors:
Cydney B Nielsen

Trends Genet 2016 Feb 28;32(2):73-75. Epub 2015 Dec 28.

Department of Pathology and Laboratory Medicine, University of British Columbia, British Columbia Cancer Agency, 675 West 10th Avenue, 4th floor, Vancouver, BC, V5Z 1L3, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2015.12.002DOI Listing
February 2016

Variant view: visualizing sequence variants in their gene context.

IEEE Trans Vis Comput Graph 2013 Dec;19(12):2546-55

University of British Columbia.

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http://dx.doi.org/10.1109/TVCG.2013.214DOI Listing
December 2013

Spark: a navigational paradigm for genomic data exploration.

Genome Res 2012 Nov 7;22(11):2262-9. Epub 2012 Sep 7.

Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver, British Columbia, V5Z 4S6, Canada.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.140665.112
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http://dx.doi.org/10.1101/gr.140665.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483555PMC
November 2012

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

Nat Struct Mol Biol 2011 Feb 23;18(2):237-44. Epub 2011 Jan 23.

The Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1038/nsmb.1991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078052PMC
February 2011

Visualizing genomes: techniques and challenges.

Nat Methods 2010 Mar 25;7(3 Suppl):S5-S15. Epub 2010 Feb 25.

British Columbia Cancer Agency, Genome Sciences Centre, Vancouver, Canada.

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http://dx.doi.org/10.1038/nmeth.1422DOI Listing
March 2010

ABySS-Explorer: visualizing genome sequence assemblies.

IEEE Trans Vis Comput Graph 2009 Nov-Dec;15(6):881-8

BC Cancer Agency, Genome Sciences Centre.

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http://dx.doi.org/10.1109/TVCG.2009.116DOI Listing
January 2010

Biased chromatin signatures around polyadenylation sites and exons.

Mol Cell 2009 Oct;36(2):245-54

Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S10972765090074
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http://dx.doi.org/10.1016/j.molcel.2009.10.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786773PMC
October 2009

Patterns of intron gain and loss in fungi.

PLoS Biol 2004 Dec 30;2(12):e422. Epub 2004 Nov 30.

Department of Biology, Massachusetts Institute of Technology Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1371/journal.pbio.0020422DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC532390PMC
December 2004

DNA polymerase gene sequences indicate western and forest tent caterpillar viruses form a new taxonomic group within baculoviruses.

J Invertebr Pathol 2002 Nov;81(3):131-47

Department of Microbiology and Immunology, University of British Columbia, BC, V6T 1Z4, Vancouver, Canada.

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http://dx.doi.org/10.1016/s0022-2011(02)00191-xDOI Listing
November 2002