Publications by authors named "Cristal Zuniga"

20Publications

Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth.

Nat Commun 2020 07 30;11(1):3803. Epub 2020 Jul 30.

Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0760, USA.

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http://dx.doi.org/10.1038/s41467-020-17612-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393147PMC
July 2020

Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph DJ.

Metab Eng Commun 2020 Dec 30;11:e00132. Epub 2020 May 30.

Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0760, USA.

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http://dx.doi.org/10.1016/j.mec.2020.e00132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7292883PMC
December 2020

Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes.

NPJ Syst Biol Appl 2020 05 15;6(1):14. Epub 2020 May 15.

Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0760, USA.

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http://dx.doi.org/10.1038/s41540-020-0135-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7229059PMC
May 2020

Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.

Nat Microbiol 2019 12 7;4(12):2184-2191. Epub 2019 Oct 7.

Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1038/s41564-019-0567-6DOI Listing
December 2019

Utilizing genome-scale models to optimize nutrient supply for sustained algal growth and lipid productivity.

NPJ Syst Biol Appl 2019 24;5:33. Epub 2019 Sep 24.

1Department of Chemical and Biomolecular Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218 USA.

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http://dx.doi.org/10.1038/s41540-019-0110-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760154PMC
April 2020

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks.

PLoS Comput Biol 2019 07 25;15(7):e1007007. Epub 2019 Jul 25.

Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1007007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6657818PMC
July 2019

A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types.

PLoS Comput Biol 2019 01 9;15(1):e1006644. Epub 2019 Jan 9.

Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1006644DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326480PMC
January 2019

Optimization of carbon and energy utilization through differential translational efficiency.

Nat Commun 2018 10 26;9(1):4474. Epub 2018 Oct 26.

Department of Pediatrics, Division of Host-Microbe Systems and Therapeutics, University of California San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA.

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http://www.nature.com/articles/s41467-018-06993-6
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http://dx.doi.org/10.1038/s41467-018-06993-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6203783PMC
October 2018

Advances in metabolic modeling of oleaginous microalgae.

Biotechnol Biofuels 2018 5;11:241. Epub 2018 Sep 5.

2Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0760 USA.

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http://dx.doi.org/10.1186/s13068-018-1244-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6124020PMC
September 2018

A systematic comparison of two empirical gas-liquid mass transfer determination methodologies to characterize methane biodegradation in stirred tank bioreactors.

J Environ Manage 2018 Jul 5;217:247-252. Epub 2018 Apr 5.

Departamento de Procesos y Tecnología, Universidad Autónoma Metropolitana-Unidad Cuajimalpa, Avenida Vasco de Quiroga 4871, Col. Santa Fe Cuajimalpa. Delegación Cuajimalpa de Morelos, Ciudad de México, Mexico. Electronic address:

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http://dx.doi.org/10.1016/j.jenvman.2018.03.097DOI Listing
July 2018

Improving saliva shotgun metagenomics by chemical host DNA depletion.

Microbiome 2018 02 27;6(1):42. Epub 2018 Feb 27.

Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.

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http://dx.doi.org/10.1186/s40168-018-0426-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5827986PMC
February 2018

Predicting Dynamic Metabolic Demands in the Photosynthetic Eukaryote .

Plant Physiol 2018 01 26;176(1):450-462. Epub 2017 Sep 26.

Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0760

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http://dx.doi.org/10.1104/pp.17.00605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5761767PMC
January 2018

Elucidation of complexity and prediction of interactions in microbial communities.

Microb Biotechnol 2017 11 19;10(6):1500-1522. Epub 2017 Sep 19.

Department of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093-0760, USA.

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http://dx.doi.org/10.1111/1751-7915.12855DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5658597PMC
November 2017

Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions.

Plant Physiol 2016 09 2;172(1):589-602. Epub 2016 Jul 2.

Department of Bioengineering, University of California, San Diego, La Jolla, California 92093-0412 (C.Z., T.H., J.L., D.C.Z., K.Z.);Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218 (C.-T.L., M.J.B.);Department of Chemical and Biomolecular Engineering, Metabolic Engineering and Systems Biology Laboratory, University of Delaware, Newark, Delaware 19716 (B.O.M., C.P.L., M.R.A.); andNational Bioenergy Center, National Renewable Energy Laboratory, Golden, Colorado 80401 (E.P.K., M.T.G.)

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http://www.plantphysiol.org/lookup/doi/10.1104/pp.16.00593
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http://dx.doi.org/10.1104/pp.16.00593DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5074608PMC
September 2016

Unraveling interactions in microbial communities - from co-cultures to microbiomes.

J Microbiol 2015 May 3;53(5):295-305. Epub 2015 May 3.

Department of Bioengineering, University of California, San Diego, CA, 92093, USA.

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http://dx.doi.org/10.1007/s12275-015-5060-1DOI Listing
May 2015

Polyhydroxyalkanoates accumulation by Methylobacterium organophilum CZ-2 during methane degradation using citrate or propionate as cosubstrates.

Bioresour Technol 2013 Feb 6;129:686-9. Epub 2012 Dec 6.

Posgrado de Biotecnología, Universidad Autónoma Metropolitana-Iztapalapa, Mexico.

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http://dx.doi.org/10.1016/j.biortech.2012.11.120DOI Listing
February 2013