Publications by authors named "Crispin J Miller"

49Publications

A model of -mer surprisal to quantify local sequence information content surrounding splice regions.

PeerJ 2020 4;8:e10063. Epub 2020 Nov 4.

Computational Biology Group, CRUK Beatson Institute, Glasgow, United Kingdom.

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November 2020

Publisher Correction: In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival.

Sci Rep 2019 Dec 24;9(1):20211. Epub 2019 Dec 24.

RNA Biology Group, CRUK Manchester Institute, The University of Manchester, Alderley Park, Manchester, SK10 4TG, UK.

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December 2019

In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival.

Sci Rep 2019 05 14;9(1):7372. Epub 2019 May 14.

RNA Biology Group, CRUK Manchester Institute, The University of Manchester, Alderley Park, Manchester, SK10 4TG, UK.

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May 2019

Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma.

Sci Rep 2018 10 4;8(1):14830. Epub 2018 Oct 4.

RNA Biology Group, CRUK Manchester Institute, The University of Manchester, Alderley Park, Manchester, SK10 4TG, UK.

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October 2018

Truncation- and motif-based pan-cancer analysis reveals tumor-suppressing kinases.

Sci Signal 2018 04 17;11(526). Epub 2018 Apr 17.

Signalling Networks in Cancer Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester M20 4BX, UK.

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April 2018

twoddpcr: an R/Bioconductor package and Shiny app for Droplet Digital PCR analysis.

Bioinformatics 2017 Sep;33(17):2743-2745

RNA Biology Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester M20?4BX, UK.

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September 2017

Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation.

Cell 2016 May 14;165(4):910-20. Epub 2016 Apr 14.

The Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK; Cancer Research UK Manchester Institute, University of Manchester, Wilmslow Road, Manchester M20 4BX, UK. Electronic address:

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May 2016

Hypoxia-driven splicing into noncoding isoforms regulates the DNA damage response.

NPJ Genom Med 2016 20;1:16020. Epub 2016 Jul 20.

RNA Biology Group, CRUK Manchester Institute, The University of Manchester, Manchester, UK.

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July 2016

Using large-scale genomics data to identify driver mutations in lung cancer: methods and challenges.

Pharmacogenomics 2015 31;16(10):1149-60. Epub 2015 Jul 31.

RNA Biology Group & Computational Biology Support Team, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, UK.

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June 2016

Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments.

Source Code Biol Med 2014 5;9(1):25. Epub 2014 Dec 5.

Molecular Oncology Group, University of Manchester, Wilmslow Road, Manchester, M20 4BX UK.

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January 2015

Discrepancies in cancer genomic sequencing highlight opportunities for driver mutation discovery.

Cancer Res 2014 Nov 25;74(22):6390-6396. Epub 2014 Sep 25.

Signalling Networks in Cancer Group, Cancer Research UK Manchester Institute, The University of Manchester, Manchester, M20 4BX, UK.

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November 2014

Epithelial and stromal microRNA signatures of columnar cell hyperplasia linking Let-7c to precancerous and cancerous breast cancer cell proliferation.

PLoS One 2014 14;9(8):e105099. Epub 2014 Aug 14.

Center for Molecular Pathology, Skåne University Hospital, Department of Laboratory Medicine Malmö, Lund University, Malmö, Sweden; Breakthrough Breast Cancer Research Unit, Institute of Cancer Sciences, University of Manchester, Manchester Academic Health Science Centre, Paterson Institute for Cancer Research, The Christie National Health Service Foundation Trust, Manchester, United Kingdom; Sahlgrenska Cancer Center, Department of Biomedicine, University of Gothenburg, Gothenburg, Sweden.

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March 2016

A global non-coding RNA system modulates fission yeast protein levels in response to stress.

Nat Commun 2014 May 23;5:3947. Epub 2014 May 23.

Applied Computational Biology and Bioinformatics Group, Cancer Research UK Manchester Institute, University of Manchester, Wilmslow Road, Manchester M20 4BX, UK.

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May 2014

Mzt1/Tam4, a fission yeast MOZART1 homologue, is an essential component of the γ-tubulin complex and directly interacts with GCP3(Alp6).

Mol Biol Cell 2013 Nov 4;24(21):3337-49. Epub 2013 Sep 4.

Department of Biochemistry, University of Leicester, Leicester LE1 9HN, United Kingdom Paterson Institute for Cancer Research, University of Manchester, Manchester M20 4BX, United Kingdom.

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November 2013