Publications by authors named "Cosmas Arnold"

12Publications

STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries.

Curr Protoc Mol Biol 2019 09;128(1):e105

Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.

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http://dx.doi.org/10.1002/cpmb.105DOI Listing
September 2019

Transcriptional cofactors display specificity for distinct types of core promoters.

Nature 2019 06 15;570(7759):122-126. Epub 2019 May 15.

Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.

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http://dx.doi.org/10.1038/s41586-019-1210-7DOI Listing
June 2019

Resolving systematic errors in widely used enhancer activity assays in human cells.

Nat Methods 2018 02 11;15(2):141-149. Epub 2017 Dec 11.

Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Campus-Vienna-Biocenter 1, Vienna, Austria.

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http://dx.doi.org/10.1038/nmeth.4534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5793997PMC
February 2018

Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution.

Nat Biotechnol 2017 02 26;35(2):136-144. Epub 2016 Dec 26.

Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Vienna, Austria.

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http://www.nature.com/articles/nbt.3739
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http://dx.doi.org/10.1038/nbt.3739DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870828PMC
February 2017

STARR-seq - principles and applications.

Genomics 2015 Sep 11;106(3):145-150. Epub 2015 Jun 11.

Research Institute of Molecular Pathology IMP, Vienna Biocenter VBC, Dr Bohr-Gasse 7, 1030 Vienna, Austria. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S08887543153001
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http://dx.doi.org/10.1016/j.ygeno.2015.06.001DOI Listing
September 2015

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

Nature 2015 Feb 15;518(7540):556-9. Epub 2014 Dec 15.

Research Institute of Molecular Pathology IMP, Vienna Biocenter VBC, Dr Bohr-Gasse 7, 1030 Vienna, Austria.

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http://dx.doi.org/10.1038/nature13994DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6795551PMC
February 2015

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

Genome Res 2014 Jul 8;24(7):1147-56. Epub 2014 Apr 8.

Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), 1030 Vienna, Austria.

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http://dx.doi.org/10.1101/gr.169243.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079970PMC
July 2014

Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Science 2013 Mar 17;339(6123):1074-7. Epub 2013 Jan 17.

Research Institute of Molecular Pathology (IMP), Vienna, Austria.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1232542
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http://dx.doi.org/10.1126/science.1232542DOI Listing
March 2013