Publications by authors named "Collin Tokheim"

22Publications

Determinants of transcription factor regulatory range.

Nat Commun 2020 05 18;11(1):2472. Epub 2020 May 18.

Department of Data Sciences, Dana-Farber Cancer Institute. Harvard T.H. Chan School of Public Health, Boston, MA, USA.

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May 2020

Integrated Informatics Analysis of Cancer-Related Variants.

JCO Clin Cancer Inform 2020 03;4:310-317

The Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD.

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March 2020

CHASMplus Reveals the Scope of Somatic Missense Mutations Driving Human Cancers.

Cell Syst 2019 07 12;9(1):9-23.e8. Epub 2019 Jun 12.

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA; Department of Oncology, Johns Hopkins University, Baltimore, MD 21204, USA. Electronic address:

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July 2019

CRAVAT 4: Cancer-Related Analysis of Variants Toolkit.

Cancer Res 2017 11;77(21):e35-e38

Department of Biomedical Engineering, The Johns Hopkins University, Baltimore, Maryland.

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November 2017

Evaluating the evaluation of cancer driver genes.

Proc Natl Acad Sci U S A 2016 12 22;113(50):14330-14335. Epub 2016 Nov 22.

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218;

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December 2016

Exome-Scale Discovery of Hotspot Mutation Regions in Human Cancer Using 3D Protein Structure.

Cancer Res 2016 07 28;76(13):3719-31. Epub 2016 Apr 28.

Department of Biomedical Engineering and Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland. Department of Oncology, Johns Hopkins University School of Medicine, Baltimore, Maryland.

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July 2016

Whole-Genome Sequencing of Salivary Gland Adenoid Cystic Carcinoma.

Cancer Prev Res (Phila) 2016 04 9;9(4):265-74. Epub 2016 Feb 9.

Department of Otolaryngology-Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, Maryland. Ludwig Center for Cancer Genetics and Therapeutics, Howard Hughes Medical Institute, and the Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, Maryland. Department of Surgery, Section of Otolaryngology-Head and Neck Surgery, The University of Chicago, Chicago, Illinois States.

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April 2016

Species-specific exon loss in human transcriptomes.

Mol Biol Evol 2015 Feb 14;32(2):481-94. Epub 2014 Nov 14.

Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles

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February 2015

Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization.

Mol Cancer Res 2015 Feb 1;13(2):305-18. Epub 2014 Oct 1.

Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, California.

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February 2015