Colleen M Cavanaugh

Colleen M Cavanaugh

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Colleen M Cavanaugh

Colleen M Cavanaugh

Publications by authors named "Colleen M Cavanaugh"

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An inter-island comparison of Darwin's finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome.

PLoS One 2019 13;14(12):e0226432. Epub 2019 Dec 13.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0226432PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6910665PMC
April 2020

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.

PLoS One 2019 17;14(6):e0217804. Epub 2019 Jun 17.

Department of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217804PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6578490PMC
February 2020

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin's finches on Santa Cruz Island.

Sci Rep 2019 Dec 11;9(1):18781. Epub 2019 Dec 11.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41598-019-54869-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6906294PMC
December 2019

Diverse Legionella-Like Bacteria Associated with Testate Amoebae of the Genus Arcella (Arcellinida: Amoebozoa).

J Eukaryot Microbiol 2018 07 7;65(5):661-668. Epub 2018 Mar 7.

Department of Organismic and Evolutionary Biology, Biological Laboratory, Harvard University, Cambridge, Massachusetts, 02138, USA.

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http://doi.wiley.com/10.1111/jeu.12511
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http://dx.doi.org/10.1111/jeu.12511DOI Listing
July 2018

Intrahost Genetic Diversity of Bacterial Symbionts Exhibits Evidence of Mixed Infections and Recombinant Haplotypes.

Mol Biol Evol 2017 Nov;34(11):2747-2761

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA.

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http://dx.doi.org/10.1093/molbev/msx188DOI Listing
November 2017

Mixed transmission modes and dynamic genome evolution in an obligate animal-bacterial symbiosis.

ISME J 2017 06 24;11(6):1359-1371. Epub 2017 Feb 24.

Department of Organismic and Evolutionary Biology, Harvard University, Biological Laboratories, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/ismej.2017.10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437345PMC
June 2017

Evidence for horizontal transmission from multilocus phylogeny of deep-sea mussel (Mytilidae) symbionts.

Environ Microbiol 2014 Dec 20;16(12):3608-21. Epub 2014 Feb 20.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA.

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http://dx.doi.org/10.1111/1462-2920.12379DOI Listing
December 2014

Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae.

Mol Ecol 2014 Mar 18;23(6):1544-57. Epub 2013 Nov 18.

Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Ave, Cambridge, MA, 02138-2020, USA; SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, 200136, China.

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http://dx.doi.org/10.1111/mec.12460DOI Listing
March 2014

The methanol dehydrogenase gene, mxaF, as a functional and phylogenetic marker for proteobacterial methanotrophs in natural environments.

PLoS One 2013 22;8(2):e56993. Epub 2013 Feb 22.

Department of Natural Sciences and Mathematics, West Liberty University, West Liberty, West Virginia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0056993PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579938PMC
September 2013

Evidence for a core gut microbiota in the zebrafish.

ISME J 2011 Oct 7;5(10):1595-608. Epub 2011 Apr 7.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.

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http://www.nature.com/articles/ismej201138
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http://dx.doi.org/10.1038/ismej.2011.38DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3176511PMC
October 2011

Phylogenetic characterization of episymbiotic bacteria hosted by a hydrothermal vent limpet (lepetodrilidae, vetigastropoda).

Biol Bull 2011 Apr;220(2):118-27

Department of Biology, University of Victoria, British Columbia, Canada.

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http://dx.doi.org/10.1086/BBLv220n2p118DOI Listing
April 2011

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis.

ISME J 2011 Jan 15;5(1):20-9. Epub 2010 Jul 15.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.

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http://www.nature.com/articles/ismej201088
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http://dx.doi.org/10.1038/ismej.2010.88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3105664PMC
January 2011

16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka, Russia.

Extremophiles 2011 Jan 12;15(1):105-16. Epub 2010 Dec 12.

Department of Organismic and Evolutionary Biology, Harvard University, Biological Laboratories 4083, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/s00792-010-0340-5DOI Listing
January 2011

Genetic subdivision of chemosynthetic endosymbionts of Solemya velum along the Southern New England coast.

Appl Environ Microbiol 2009 Sep 24;75(18):6005-7. Epub 2009 Jul 24.

Department of Organismic and Evolutionary Biology, Harvard University, The Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1128/AEM.00689-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747846PMC
September 2009

Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam.

Environ Microbiol 2009 Aug 21;11(8):2136-47. Epub 2009 Apr 21.

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

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http://dx.doi.org/10.1111/j.1462-2920.2009.01933.xDOI Listing
August 2009

Evidence for homologous recombination in intracellular chemosynthetic clam symbionts.

Mol Biol Evol 2009 Jun 16;26(6):1391-404. Epub 2009 Mar 16.

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.

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http://www.fjstewart.org/Pubs/Stewart_et_al_2009_recomb.pdf
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http://mbe.oxfordjournals.org/cgi/doi/10.1093/molbev/msp049
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http://dx.doi.org/10.1093/molbev/msp049DOI Listing
June 2009

Quantifying nonspecific TEM beta-lactamase (blaTEM) genes in a wastewater stream.

Appl Environ Microbiol 2009 Jan 7;75(1):203-11. Epub 2008 Nov 7.

The Biological Laboratories, Harvard University, 16 Divinity Ave., Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1128/AEM.01254-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612200PMC
January 2009

Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts.

BMC Genomics 2008 Dec 4;9:585. Epub 2008 Dec 4.

Harvard University, Organismic and Evolutionary Biology, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1186/1471-2164-9-585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2642828PMC
December 2008

Free-living tube worm endosymbionts found at deep-sea vents.

Appl Environ Microbiol 2008 Jun 11;74(12):3895-8. Epub 2008 Apr 11.

Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1128/AEM.02470-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2446571PMC
June 2008

Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis.

Mol Biol Evol 2008 Apr 12;25(4):673-87. Epub 2008 Jan 12.

Department of Organismic and Evolutionary Biology, Harvard University, USA.

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http://dx.doi.org/10.1093/molbev/msn010DOI Listing
April 2008

Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria.

J Mol Evol 2007 Jul 12;65(1):44-67. Epub 2007 Jun 12.

Department of Organismic and Evolutionary Biology, Harvard University, The Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/s00239-006-0235-3DOI Listing
July 2007

Molecular characterization of methanotrophic communities in forest soils that consume atmospheric methane.

FEMS Microbiol Ecol 2007 Jun 28;60(3):490-500. Epub 2007 Mar 28.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA02138, USA.

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http://dx.doi.org/10.1111/j.1574-6941.2007.00308.xDOI Listing
June 2007

CO2 uptake and fixation by endosymbiotic chemoautotrophs from the bivalve Solemya velum.

Appl Environ Microbiol 2007 Feb 8;73(4):1174-9. Epub 2006 Dec 8.

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1128/AEM.01817-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1828671PMC
February 2007

Off-axis symbiosis found: Characterization and biogeography of bacterial symbionts of Bathymodiolus mussels from Lost City hydrothermal vents.

Environ Microbiol 2006 Nov;8(11):1902-12

Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Ave., Biolabs 4081, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1111/j.1462-2920.2005.01113.xDOI Listing
November 2006

Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)--model systems for studies of symbiont-host adaptation.

Antonie Van Leeuwenhoek 2006 Nov 7;90(4):343-60. Epub 2006 Oct 7.

Department of Organismic and Evolutionary Biology, The Biological Laboratories, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/s10482-006-9086-6DOI Listing
November 2006

16S rRNA phylogenetic investigation of the candidate division "Korarchaeota".

Appl Environ Microbiol 2006 Jul;72(7):5077-82

Department of Organismic and Evolutionary Biology, Harvard University, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1128/AEM.00052-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1489347PMC
July 2006

Symbiosis of thioautotrophic bacteria with Riftia pachyptila.

Prog Mol Subcell Biol 2006 ;41:197-225

Department of Organismic and Evolutionary Biology, Harvard University, The Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/3-540-28221-1_10DOI Listing
June 2006

Symbioses of methanotrophs and deep-sea mussels (Mytilidae: Bathymodiolinae).

Prog Mol Subcell Biol 2006 ;41:227-49

Department of Organismic and Evolutionary Biology, Havard University, The Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/3-540-28221-1_11DOI Listing
June 2006

The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives.

Proc Natl Acad Sci U S A 2006 Apr 28;103(14):5442-7. Epub 2006 Mar 28.

The Kyoto University Museum, Kyoto University, Yoshida-honmachi, Sakyo, Kyoto 606-8501, Japan.

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http://dx.doi.org/10.1073/pnas.0600999103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1459374PMC
April 2006

Chemosynthetic endosymbioses: adaptations to oxic-anoxic interfaces.

Trends Microbiol 2005 Sep;13(9):439-48

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1016/j.tim.2005.07.007DOI Listing
September 2005

Phylogenetic analyses of the core antenna domain: investigating the origin of photosystem I.

J Mol Evol 2005 Feb;60(2):153-63

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/s00239-003-0181-2DOI Listing
February 2005

Influence of form IA RubisCO and environmental dissolved inorganic carbon on the delta13C of the clam-chemoautotroph symbiosis Solemya velum.

Environ Microbiol 2004 Dec;6(12):1210-9

Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1111/j.1462-2920.2004.00642.xDOI Listing
December 2004

Characterization and expression of genes from the RubisCO gene cluster of the chemoautotrophic symbiont of Solemya velum: cbbLSQO.

Arch Microbiol 2004 Sep 28;182(1):18-29. Epub 2004 Jul 28.

Department of Organismic and Evolutionary Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA.

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http://link.springer.com/10.1007/s00203-004-0689-x
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http://dx.doi.org/10.1007/s00203-004-0689-xDOI Listing
September 2004

Sequence of the core antenna domain from the anoxygenic phototroph Heliophilum fasciatum: implications for diversity of reaction center type I.

Curr Microbiol 2004 Jun;48(6):438-40

Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA.

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http://dx.doi.org/10.1007/s00284-003-4221-3DOI Listing
June 2004

Sequencing-independent method to generate oligonucleotide probes targeting a variable region in bacterial 16S rRNA by PCR with detachable primers.

Appl Environ Microbiol 2002 Dec;68(12):6077-86

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge 02139, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC134391PMC
http://dx.doi.org/10.1128/aem.68.12.6077-6086.2002DOI Listing
December 2002