Publications by authors named "Clive J Hoggart"

24Publications

A three-marker protein biosignature distinguishes tuberculosis from other respiratory diseases in Gambian children.

Authors:
Toyin Togun Clive J Hoggart Schadrac C Agbla Marie P Gomez Uzochukwu Egere Abdou K Sillah Binta Saidy Francis Mendy Madhukar Pai Beate Kampmann

EBioMedicine 2020 Aug 22;58:102909. Epub 2020 Jul 22.

Vaccines and Immunity Theme, Medical Research Council Unit The Gambia at the London School of Hygiene & Tropical Medicine, Atlantic Boulevard, Fajara, The Gambia; The Vaccine Centre, and Clinical Research Department, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2020.102909DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7381493PMC
August 2020

Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma.

Authors:
Jiyeon Choi Tongwu Zhang Andrew Vu Julien Ablain Matthew M Makowski Leandro M Colli Mai Xu Rebecca C Hennessey Jinhu Yin Harriet Rothschild Cathrin Gräwe Michael A Kovacs Karen M Funderburk Myriam Brossard John Taylor Bogdan Pasaniuc Raj Chari Stephen J Chanock Clive J Hoggart Florence Demenais Jennifer H Barrett Matthew H Law Mark M Iles Kai Yu Michiel Vermeulen Leonard I Zon Kevin M Brown

Nat Commun 2020 06 1;11(1):2718. Epub 2020 Jun 1.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, 20892, USA.

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http://dx.doi.org/10.1038/s41467-020-16590-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7264232PMC
June 2020

Secondary re-analysis of the FEAST trial - Authors' reply.

Authors:
Michael Levin Aubrey J Cunnington Clive J Hoggart

Lancet Respir Med 2019 10;7(10):e31

Section of Paediatric Infectious Diseases, Department of Infectious Disease, Imperial College London, London W2 1PG, UK.

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http://dx.doi.org/10.1016/S2213-2600(19)30264-4DOI Listing
October 2019

Effects of saline or albumin fluid bolus in resuscitation: evidence from re-analysis of the FEAST trial.

Authors:
Michael Levin Aubrey J Cunnington Clare Wilson Simon Nadel Hans Joerg Lang Nelly Ninis Mignon McCulloch Andrew Argent Heloise Buys Christopher A Moxon Abigail Best Ruud G Nijman Clive J Hoggart

Lancet Respir Med 2019 07 10;7(7):581-593. Epub 2019 Jun 10.

Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, London, UK.

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http://dx.doi.org/10.1016/S2213-2600(19)30114-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6593355PMC
July 2019

Diagnosis of Kawasaki Disease Using a Minimal Whole-Blood Gene Expression Signature.

Authors:
Victoria J Wright Jethro A Herberg Myrsini Kaforou Chisato Shimizu Hariklia Eleftherohorinou Hannah Shailes Anouk M Barendregt Stephanie Menikou Stuart Gormley Maurice Berk Long Truong Hoang Adriana H Tremoulet John T Kanegaye Lachlan J M Coin Mary P Glodé Martin Hibberd Taco W Kuijpers Clive J Hoggart Jane C Burns Michael Levin

JAMA Pediatr 2018 10 1;172(10):e182293. Epub 2018 Oct 1.

Section of Paediatrics, Imperial College London, London, United Kingdom.

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http://archpedi.jamanetwork.com/article.aspx?doi=10.1001/jam
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http://dx.doi.org/10.1001/jamapediatrics.2018.2293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6233768PMC
October 2018

npInv: accurate detection and genotyping of inversions using long read sub-alignment.

Authors:
Haojing Shao Devika Ganesamoorthy Tania Duarte Minh Duc Cao Clive J Hoggart Lachlan J M Coin

BMC Bioinformatics 2018 07 13;19(1):261. Epub 2018 Jul 13.

Genomics of Development and Disease Division, Institute for Molecular Bioscience, University of Queensland, 306 Carmody Rd, St Lucia, Brisbane, 4067, Australia.

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http://dx.doi.org/10.1186/s12859-018-2252-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6044046PMC
July 2018

Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children.

Authors:
Jethro A Herberg Myrsini Kaforou Victoria J Wright Hannah Shailes Hariklia Eleftherohorinou Clive J Hoggart Miriam Cebey-López Michael J Carter Victoria A Janes Stuart Gormley Chisato Shimizu Adriana H Tremoulet Anouk M Barendregt Antonio Salas John Kanegaye Andrew J Pollard Saul N Faust Sanjay Patel Taco Kuijpers Federico Martinón-Torres Jane C Burns Lachlan J M Coin Michael Levin

JAMA 2016 Aug 23-30;316(8):835-45

Section of Paediatrics, Division of Infectious Diseases, Department of Medicine, Imperial College London, London, United Kingdom.

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https://jama.jamanetwork.com/data/Journals/JAMA/935665/JPC16
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http://dx.doi.org/10.1001/jama.2016.11236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5997174PMC
September 2016

Predicting IVIG resistance in UK Kawasaki disease.

Authors:
Sarah Davies Natalina Sutton Sarah Blackstock Stuart Gormley Clive J Hoggart Michael Levin Jethro A Herberg

Arch Dis Child 2015 Apr 10;100(4):366-8. Epub 2015 Feb 10.

Department of Paediatric Infectious Diseases, St Mary's Hospital, Imperial College Healthcare NHS Trust, London, UK Section of Paediatrics, Imperial College London, London, UK.

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http://dx.doi.org/10.1136/archdischild-2014-307397DOI Listing
April 2015

Novel approach identifies SNPs in SLC2A10 and KCNK9 with evidence for parent-of-origin effect on body mass index.

Authors:
Clive J Hoggart Giulia Venturini Massimo Mangino Felicia Gomez Giulia Ascari Jing Hua Zhao Alexander Teumer Thomas W Winkler Natalia Tšernikova Jian'an Luan Evelin Mihailov Georg B Ehret Weihua Zhang David Lamparter Tõnu Esko Aurelien Macé Sina Rüeger Pierre-Yves Bochud Matteo Barcella Yves Dauvilliers Beben Benyamin David M Evans Caroline Hayward Mary F Lopez Lude Franke Alessia Russo Iris M Heid Erika Salvi Sailaja Vendantam Dan E Arking Eric Boerwinkle John C Chambers Giovanni Fiorito Harald Grallert Simonetta Guarrera Georg Homuth Jennifer E Huffman David Porteous Darius Moradpour Alex Iranzo Johannes Hebebrand John P Kemp Gert J Lammers Vincent Aubert Markus H Heim Nicholas G Martin Grant W Montgomery Rosa Peraita-Adrados Joan Santamaria Francesco Negro Carsten O Schmidt Robert A Scott Tim D Spector Konstantin Strauch Henry Völzke Nicholas J Wareham Wei Yuan Jordana T Bell Aravinda Chakravarti Jaspal S Kooner Annette Peters Giuseppe Matullo Henri Wallaschofski John B Whitfield Fred Paccaud Peter Vollenweider Sven Bergmann Jacques S Beckmann Mehdi Tafti Nicholas D Hastie Daniele Cusi Murielle Bochud Timothy M Frayling Andres Metspalu Marjo-Riitta Jarvelin André Scherag George Davey Smith Ingrid B Borecki Valentin Rousson Joel N Hirschhorn Carlo Rivolta Ruth J F Loos Zoltán Kutalik

PLoS Genet 2014 Jul 31;10(7):e1004508. Epub 2014 Jul 31.

Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland; Institute of Social and Preventive Medicine (IUMSP), Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne, Switzerland.

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http://dx.doi.org/10.1371/journal.pgen.1004508DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117451PMC
July 2014

Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.

Authors:
Ghazaleh Fatemifar Clive J Hoggart Lavinia Paternoster John P Kemp Inga Prokopenko Momoko Horikoshi Victoria J Wright Jon H Tobias Stephen Richmond Alexei I Zhurov Arshed M Toma Anneli Pouta Anja Taanila Kirsi Sipila Raija Lähdesmäki Demetris Pillas Frank Geller Bjarke Feenstra Mads Melbye Ellen A Nohr Susan M Ring Beate St Pourcain Nicholas J Timpson George Davey Smith Marjo-Riitta Jarvelin David M Evans

Hum Mol Genet 2013 Sep 23;22(18):3807-17. Epub 2013 May 23.

MRC Centre for Causal Analyses in Translational Epidemiology (CAiTE), School of Social and Community Medicine, Lower Maudlin Street, Bristol, UK.

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http://dx.doi.org/10.1093/hmg/ddt231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3749866PMC
September 2013

The effect of genomic inversions on estimation of population genetic parameters from SNP data.

Authors:
Nafisa-Katrin Seich Al Basatena Clive J Hoggart Lachlan J Coin Paul F O'Reilly

Genetics 2013 Jan 12;193(1):243-53. Epub 2012 Nov 12.

Department of Immunology, Imperial College London, London W2 1PG, United Kingdom.

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http://www.genetics.org/content/genetics/193/1/243.full.pdf
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http://www.genetics.org/cgi/doi/10.1534/genetics.112.145599
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http://dx.doi.org/10.1534/genetics.112.145599DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3527249PMC
January 2013

A multi-SNP locus-association method reveals a substantial fraction of the missing heritability.

Authors:
Georg B Ehret David Lamparter Clive J Hoggart John C Whittaker Jacques S Beckmann Zoltán Kutalik

Am J Hum Genet 2012 Nov;91(5):863-71

Division of Cardiology, Geneva University Hospital, Geneva, Switzerland.

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http://medweb1.unige.ch/actualites/images/uploads/PIIS000292
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http://linkinghub.elsevier.com/retrieve/pii/S000292971200520
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http://dx.doi.org/10.1016/j.ajhg.2012.09.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3487134PMC
November 2012

MultiPhen: joint model of multiple phenotypes can increase discovery in GWAS.

Authors:
Paul F O'Reilly Clive J Hoggart Yotsawat Pomyen Federico C F Calboli Paul Elliott Marjo-Riitta Jarvelin Lachlan J M Coin

PLoS One 2012 2;7(5):e34861. Epub 2012 May 2.

Department of Epidemiology and Biostatistics, Imperial College London, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034861PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342314PMC
September 2012

Fine-scale estimation of location of birth from genome-wide single-nucleotide polymorphism data.

Authors:
Clive J Hoggart Paul F O'Reilly Marika Kaakinen Weihua Zhang John C Chambers Jaspal S Kooner Lachlan J M Coin Marjo-Riitta Jarvelin

Genetics 2012 Feb 17;190(2):669-77. Epub 2011 Nov 17.

Department of Epidemiology and Biostatistics, Imperial College, London W2 1PG, United Kingdom.

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http://dx.doi.org/10.1534/genetics.111.135657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3276643PMC
February 2012

Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways.

Authors:
Hariklia Eleftherohorinou Clive J Hoggart Victoria J Wright Michael Levin Lachlan J M Coin

Hum Mol Genet 2011 Sep 8;20(17):3494-506. Epub 2011 Jun 8.

Department of Epidemiology and Biostatistics, Imperial College London, Norfolk Place, London W2 1PG, UK.

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https://academic.oup.com/hmg/article-lookup/doi/10.1093/hmg/
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http://dx.doi.org/10.1093/hmg/ddr248DOI Listing
September 2011

Genome-wide association study reveals multiple loci associated with primary tooth development during infancy.

Authors:
Demetris Pillas Clive J Hoggart David M Evans Paul F O'Reilly Kirsi Sipilä Raija Lähdesmäki Iona Y Millwood Marika Kaakinen Gopalakrishnan Netuveli David Blane Pimphen Charoen Ulla Sovio Anneli Pouta Nelson Freimer Anna-Liisa Hartikainen Jaana Laitinen Sarianna Vaara Beate Glaser Peter Crawford Nicholas J Timpson Susan M Ring Guohong Deng Weihua Zhang Mark I McCarthy Panos Deloukas Leena Peltonen Paul Elliott Lachlan J M Coin George Davey Smith Marjo-Riitta Jarvelin

PLoS Genet 2010 Feb 26;6(2):e1000856. Epub 2010 Feb 26.

Department of Epidemiology and Public Health, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1000856DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829062PMC
February 2010

invertFREGENE: software for simulating inversions in population genetic data.

Authors:
Paul F O'Reilly Lachlan J M Coin Clive J Hoggart

Bioinformatics 2010 Mar 26;26(6):838-40. Epub 2010 Jan 26.

Department of Epidemiology and Biostatistics, Imperial College.

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http://dx.doi.org/10.1093/bioinformatics/btq029DOI Listing
March 2010

Fregene: simulation of realistic sequence-level data in populations and ascertained samples.

Authors:
Marc Chadeau-Hyam Clive J Hoggart Paul F O'Reilly John C Whittaker Maria De Iorio David J Balding

BMC Bioinformatics 2008 Sep 8;9:364. Epub 2008 Sep 8.

Department of Epidemiology and Public Health, Imperial College, St Mary's Campus, Norfolk Place, London, W2 1PG, UK.

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http://dx.doi.org/10.1186/1471-2105-9-364DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2542380PMC
September 2008

Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies.

Authors:
Clive J Hoggart John C Whittaker Maria De Iorio David J Balding

PLoS Genet 2008 Jul 25;4(7):e1000130. Epub 2008 Jul 25.

Department of Epidemiology and Public Health, Imperial College, London, United Kingdom.

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http://www2.ims.nus.edu.sg/Programs/genomics09/files/DavidBa
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http://dx.plos.org/10.1371/journal.pgen.1000130
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http://dx.doi.org/10.1371/journal.pgen.1000130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2464715PMC
July 2008

Genome-wide significance for dense SNP and resequencing data.

Authors:
Clive J Hoggart Taane G Clark Maria De Iorio John C Whittaker David J Balding

Genet Epidemiol 2008 Feb;32(2):179-85

Department of Epidemiology and Public Health, Imperial College London, Norfolk Place, London, UK.

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http://dx.doi.org/10.1002/gepi.20292DOI Listing
February 2008

Sequence-level population simulations over large genomic regions.

Authors:
Clive J Hoggart Marc Chadeau-Hyam Taane G Clark Riccardo Lampariello John C Whittaker Maria De Iorio David J Balding

Genetics 2007 Nov 18;177(3):1725-31. Epub 2007 Oct 18.

Department of Epidemiology and Public Health, Imperial College, London W2 1PG, United Kingdom.

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http://dx.doi.org/10.1534/genetics.106.069088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2147962PMC
November 2007

Assessing the relative ages of admixture in the bovine hybrid zones of Africa and the Near East using X chromosome haplotype mosaicism.

Authors:
Abigail R Freeman Clive J Hoggart O Hanotte Daniel G Bradley

Genetics 2006 Jul 2;173(3):1503-10. Epub 2006 Apr 2.

Smurfit Institute of Genetics, Trinity Colege, Dublin, Ireland.

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http://dx.doi.org/10.1534/genetics.105.053280DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1526677PMC
July 2006

Control of confounding of genetic associations in stratified populations.

Authors:
Clive J Hoggart Eteban J Parra Mark D Shriver Carolina Bonilla Rick A Kittles David G Clayton Paul M McKeigue

Am J Hum Genet 2003 Jun;72(6):1492-1504

Epidemiology Unit, London School of Hygiene and Tropical Medicine, Umited Kingdom.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1180309PMC
http://dx.doi.org/10.1086/375613DOI Listing
June 2003

Skin pigmentation, biogeographical ancestry and admixture mapping.

Authors:
Mark D Shriver Esteban J Parra Sonia Dios Carolina Bonilla Heather Norton Celina Jovel Carrie Pfaff Cecily Jones Aisha Massac Neil Cameron Archie Baron Tabitha Jackson George Argyropoulos Li Jin Clive J Hoggart Paul M McKeigue Rick A Kittles

Hum Genet 2003 Apr 11;112(4):387-99. Epub 2003 Feb 11.

Department of Anthropology, Penn State University, 409 Carpenter Bld., University Park, PA 16802, USA.

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http://dx.doi.org/10.1007/s00439-002-0896-yDOI Listing
April 2003