Publications by authors named "Clifford A Meyer"

52Publications

Computational Approaches to Modeling Transcription Factor Activity and Gene Regulation.

Trends Biochem Sci 2020 Dec 10;45(12):1094-1095. Epub 2020 Oct 10.

Department of Data Science, Dana-Farber Cancer Institute, Harvard T.H. Chan School of Public Health, Boston, MA 02215, USA.

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December 2020

Integrative analyses of single-cell transcriptome and regulome using MAESTRO.

Genome Biol 2020 08 7;21(1):198. Epub 2020 Aug 7.

Department of Data Science, Dana-Farber Cancer Institute, Harvard T.H. Chan School of Public Health, Boston, MA, 02215, USA.

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August 2020

Determinants of transcription factor regulatory range.

Nat Commun 2020 05 18;11(1):2472. Epub 2020 May 18.

Department of Data Sciences, Dana-Farber Cancer Institute. Harvard T.H. Chan School of Public Health, Boston, MA, USA.

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May 2020

Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.

Nucleic Acids Res 2019 07;47(W1):W206-W211

Shanghai Key Laboratory of Tuberculosis, Clinical Translational Research Center, Shanghai Pulmonary Hospital, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China.

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July 2019

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Nucleic Acids Res 2019 01;47(D1):D729-D735

Shanghai Key Laboratory of Tuberculosis, Clinical Translational Research Center, Shanghai Pulmonary Hospital, School of Life Sciences and Technology, Tongji University, Shanghai 200092, China.

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January 2019

Improved design and analysis of CRISPR knockout screens.

Bioinformatics 2018 12;34(23):4095-4101

Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA.

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December 2018

Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer.

Cancer Res 2017 11;77(21):e19-e22

Shanghai Key Laboratory of Tuberculosis, Clinical Translational Research Center, Shanghai Pulmonary Hospital, Tongji University, Shanghai, China.

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November 2017

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Nucleic Acids Res 2017 01 26;45(D1):D658-D662. Epub 2016 Oct 26.

Clinical Translational Research Center, Shanghai Pulmonary Hospital, Tongji University, Shanghai 200433, China

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January 2017

Modeling cis-regulation with a compendium of genome-wide histone H3K27ac profiles.

Genome Res 2016 10 27;26(10):1417-1429. Epub 2016 Jul 27.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02215, USA; Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.

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October 2016

High-dimensional genomic data bias correction and data integration using MANCIE.

Nat Commun 2016 Apr 13;7:11305. Epub 2016 Apr 13.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02215, USA.

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April 2016

Sequence determinants of improved CRISPR sgRNA design.

Genome Res 2015 Aug 10;25(8):1147-57. Epub 2015 Jun 10.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, Massachusetts 02115, USA; Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA;

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August 2015

Identifying and mitigating bias in next-generation sequencing methods for chromatin biology.

Nat Rev Genet 2014 Nov 16;15(11):709-21. Epub 2014 Sep 16.

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, Massachusetts 02115, USA; and Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.

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November 2014