Claudio Casola

Claudio Casola

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Claudio Casola

Claudio Casola

Publications by authors named "Claudio Casola"

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Resequencing of massive pine genomes helps to unlock the genetic underpinning of quantitative traits in conifer trees.

Authors:
Claudio Casola

New Phytol 2019 03;221(4):1669-1671

Department of Ecosystem Science and Management, Texas A&M University, 495 Horticulture Rd, College Station, TX, 77843-2138, USA.

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http://dx.doi.org/10.1111/nph.15655DOI Listing
March 2019

The nonrandom evolution of gene families.

Am J Bot 2019 01 31;106(1):14-17. Epub 2018 Dec 31.

Department of Ecosystem Science and Management, College of Agriculture and Life Sciences, Texas A&M University, College Station, TX, 77843, USA.

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http://dx.doi.org/10.1002/ajb2.1211DOI Listing
January 2019

From De Novo to "De Nono": The Majority of Novel Protein-Coding Genes Identified with Phylostratigraphy Are Old Genes or Recent Duplicates.

Authors:
Claudio Casola

Genome Biol Evol 2018 11 1;10(11):2906-2918. Epub 2018 Nov 1.

Department of Ecosystem Science and Management, Texas A&M University.

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http://dx.doi.org/10.1093/gbe/evy231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6239577PMC
November 2018

Pinaceae show elevated rates of gene turnover that are robust to incomplete gene annotation.

Plant J 2018 Jun 14. Epub 2018 Jun 14.

Department of Ecosystem Science and Management, Texas A&M University, College Station, TX, 77843-2138, USA.

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http://dx.doi.org/10.1111/tpj.13994DOI Listing
June 2018

The Genomic Impact of Gene Retrocopies: What Have We Learned from Comparative Genomics, Population Genomics, and Transcriptomic Analyses?

Genome Biol Evol 2017 06;9(6):1351-1373

Department of Biology, University of Texas at Arlington, Arlington, TX.

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http://dx.doi.org/10.1093/gbe/evx081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5470649PMC
June 2017

An Ancient Transkingdom Horizontal Transfer of Penelope-Like Retroelements from Arthropods to Conifers.

Genome Biol Evol 2016 May 2;8(4):1252-66. Epub 2016 May 2.

Department of Ecosystem Science and Management, Texas A&M University

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http://dx.doi.org/10.1093/gbe/evw076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860704PMC
May 2016

TP53 Gene and Cancer Resistance in Elephants.

Authors:
Claudio Casola

JAMA 2016 Apr;315(16):1788-9

Department of Ecosystem Science and Management, Texas A & M University, College Station.

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http://dx.doi.org/10.1001/jama.2016.0440DOI Listing
April 2016

Gibbon genome and the fast karyotype evolution of small apes.

Nature 2014 Sep;513(7517):195-201

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13679DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4249732PMC
September 2014

Very low rate of gene conversion in the yeast genome.

Mol Biol Evol 2012 Dec 27;29(12):3817-26. Epub 2012 Jul 27.

Department of Biology, Indiana University, USA.

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http://dx.doi.org/10.1093/molbev/mss192DOI Listing
December 2012

Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements.

Mol Biol Evol 2012 Jan 2;29(1):239-47. Epub 2011 Aug 2.

Department of Ecology and Evolutionary Biology and Yale Systems Biology Institute, Yale University, USA.

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http://dx.doi.org/10.1093/molbev/msr189DOI Listing
January 2012

Daz- and pumilio-like genes are asymmetrically localized in Pelophylax (Rana) oocytes and are expressed during early spermatogenesis.

J Exp Zool B Mol Dev Evol 2011 Jul 22;316(5):330-8. Epub 2011 Feb 22.

Laboratory of Cell and Developmental Biology, Department of Biology, University of Pisa, Pisa, Italy.

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http://dx.doi.org/10.1002/jez.b.21405DOI Listing
July 2011

The ecoresponsive genome of Daphnia pulex.

Science 2011 Feb;331(6017):555-61

Center for Genomics and Bioinformatics, Indiana University, 915 East Third Street, Bloomington, IN 47405, USA.

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http://www3.nd.edu/~mpfrende/PDFs/Science-2011-Colbourne-555
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http://www.sciencemag.org/cgi/doi/10.1126/science.1197761
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http://dx.doi.org/10.1126/science.1197761DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3529199PMC
February 2011

Comparative and demographic analysis of orang-utan genomes.

Authors:
Devin P Locke LaDeana W Hillier Wesley C Warren Kim C Worley Lynne V Nazareth Donna M Muzny Shiaw-Pyng Yang Zhengyuan Wang Asif T Chinwalla Pat Minx Makedonka Mitreva Lisa Cook Kim D Delehaunty Catrina Fronick Heather Schmidt Lucinda A Fulton Robert S Fulton Joanne O Nelson Vincent Magrini Craig Pohl Tina A Graves Chris Markovic Andy Cree Huyen H Dinh Jennifer Hume Christie L Kovar Gerald R Fowler Gerton Lunter Stephen Meader Andreas Heger Chris P Ponting Tomas Marques-Bonet Can Alkan Lin Chen Ze Cheng Jeffrey M Kidd Evan E Eichler Simon White Stephen Searle Albert J Vilella Yuan Chen Paul Flicek Jian Ma Brian Raney Bernard Suh Richard Burhans Javier Herrero David Haussler Rui Faria Olga Fernando Fleur Darré Domènec Farré Elodie Gazave Meritxell Oliva Arcadi Navarro Roberta Roberto Oronzo Capozzi Nicoletta Archidiacono Giuliano Della Valle Stefania Purgato Mariano Rocchi Miriam K Konkel Jerilyn A Walker Brygg Ullmer Mark A Batzer Arian F A Smit Robert Hubley Claudio Casola Daniel R Schrider Matthew W Hahn Victor Quesada Xose S Puente Gonzalo R Ordoñez Carlos López-Otín Tomas Vinar Brona Brejova Aakrosh Ratan Robert S Harris Webb Miller Carolin Kosiol Heather A Lawson Vikas Taliwal André L Martins Adam Siepel Arindam Roychoudhury Xin Ma Jeremiah Degenhardt Carlos D Bustamante Ryan N Gutenkunst Thomas Mailund Julien Y Dutheil Asger Hobolth Mikkel H Schierup Oliver A Ryder Yuko Yoshinaga Pieter J de Jong George M Weinstock Jeffrey Rogers Elaine R Mardis Richard A Gibbs Richard K Wilson

Nature 2011 Jan;469(7331):529-33

The Genome Center at Washington University, Washington University School of Medicine, 4444 Forest Park Avenue, Saint Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature09687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060778PMC
January 2011

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.

Science 2010 Oct;330(6000):86-8

Center for Disease Vector Research, University of California Riverside, Riverside, CA 92521, USA.

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http://dx.doi.org/10.1126/science.1191864DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740384PMC
October 2010

Nonallelic gene conversion in the genus Drosophila.

Genetics 2010 May 9;185(1):95-103. Epub 2010 Mar 9.

Department of Biology, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1534/genetics.110.115444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2870979PMC
May 2010

Evolution of the Schlafen genes, a gene family associated with embryonic lethality, meiotic drive, immune processes and orthopoxvirus virulence.

Gene 2009 Nov 17;447(1):1-11. Epub 2009 Jul 17.

Department of Biology. The University of Texas Arlington, 501 S. Nedderman Dr. Arlington, TX 76019-0498, USA.

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http://dx.doi.org/10.1016/j.gene.2009.07.006DOI Listing
November 2009

Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes.

Genetics 2009 Jun 23;182(2):615-22. Epub 2009 Mar 23.

School of Informatics, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1534/genetics.109.101428DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2691768PMC
June 2009

Gene conversion among paralogs results in moderate false detection of positive selection using likelihood methods.

J Mol Evol 2009 Jun 27;68(6):679-87. Epub 2009 May 27.

Department of Biology and School of Informatics, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1007/s00239-009-9241-6DOI Listing
June 2009

Adaptive evolution of young gene duplicates in mammals.

Genome Res 2009 May;19(5):859-67

School of Informatics, Indiana University, Bloomington, IN 47405, USA.

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http://dx.doi.org/10.1101/gr.085951.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2675974PMC
May 2009

Quality of regulatory elements in Drosophila retrogenes.

Genomics 2009 Jan 23;93(1):83-9. Epub 2008 Oct 23.

Department of Biology, Box 19498, University of Texas-Arlington, Arlington, TX 76019, USA.

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http://dx.doi.org/10.1016/j.ygeno.2008.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2753227PMC
January 2009

Evolutionary origin of regulatory regions of retrogenes in Drosophila.

BMC Genomics 2008 May 22;9:241. Epub 2008 May 22.

Department of Biology, University of Texas at Arlington, Arlington, TX, USA.

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http://dx.doi.org/10.1186/1471-2164-9-241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2413143PMC
May 2008

Transposase-derived transcription factors regulate light signaling in Arabidopsis.

Science 2007 Nov;318(5854):1302-5

Boyce Thompson Institute for Plant Research (BTI), Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1126/science.1146281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2151751PMC
November 2007

PIF-like transposons are common in drosophila and have been repeatedly domesticated to generate new host genes.

Mol Biol Evol 2007 Aug 7;24(8):1872-88. Epub 2007 Jun 7.

Biology Department, University of Texas, Arlington, TX, USA.

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http://dx.doi.org/10.1093/molbev/msm116DOI Listing
August 2007

Differential expression of two vasa/PL10-related genes during gametogenesis in the special model system Rana.

Dev Genes Evol 2007 May 2;217(5):395-402. Epub 2007 Mar 2.

Laboratorio di Biologia Cellulare e dello Sviluppo, Dipartimento di Biologia, Università di Pisa, Via Carducci 13, 56010 Ghezzano, Pisa, Italy,

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http://dx.doi.org/10.1007/s00427-007-0143-6DOI Listing
May 2007

Gametogenesis of intergroup hybrids of hemiclonal frogs.

Genet Res 2007 Feb;89(1):39-45

Laboratori di Biologia cellulare e dello sviluppo, Dipartimento di Biologia, Università di Pisa, Via Carducci 13, 56010 Ghezzano, Pisa, Italy.

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http://dx.doi.org/10.1017/S0016672307008610DOI Listing
February 2007