Claudia C Weber

Claudia C Weber

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Claudia C Weber

Claudia C Weber

Publications by authors named "Claudia C Weber"

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16Publications

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Physicochemical Amino Acid Properties Better Describe Substitution Rates in Large Populations.

Mol Biol Evol 2019 04;36(4):679-690

Evolutionary Biology Center, Uppsala University, Uppsala, Sweden.

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https://academic.oup.com/mbe/advance-article/doi/10.1093/mol
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http://dx.doi.org/10.1093/molbev/msz003DOI Listing
April 2019

A new parameter-rich structure-aware mechanistic model for amino acid substitution during evolution.

Proteins 2018 02 12;86(2):218-228. Epub 2017 Dec 12.

Department of Biology and Center for Computational Genetics and Genomics, Temple University, Philadelphia, Pennsylvania, 19122.

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http://dx.doi.org/10.1002/prot.25429DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897152PMC
February 2018

Protein evolution depends on multiple distinct population size parameters.

BMC Evol Biol 2018 02 8;18(1):17. Epub 2018 Feb 8.

Department of Biology and Center for Computational Genetics and Genomics, Temple University, Philadelphia, 19121, USA.

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http://dx.doi.org/10.1186/s12862-017-1085-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5806465PMC
February 2018

ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding Stability.

Syst Biol 2017 Nov;66(6):1054-1064

Centre for Molecular Biology Severo Ochoa (CBMSO), Consejo Superior de Investigaciones Científicas (CSIC), Madrid, Spain.

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http://dx.doi.org/10.1093/sysbio/syw121DOI Listing
November 2017

GC-biased gene conversion links the recombination landscape and demography to genomic base composition: GC-biased gene conversion drives genomic base composition across a wide range of species.

Bioessays 2015 Dec 7;37(12):1317-26. Epub 2015 Oct 7.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1002/bies.201500058DOI Listing
December 2015

Early mesozoic coexistence of amniotes and hepadnaviridae.

PLoS Genet 2014 Dec 11;10(12):e1004559. Epub 2014 Dec 11.

Department of Evolutionary Biology (EBC), Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1371/journal.pgen.1004559DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263362PMC
December 2014

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Authors:
Erich D Jarvis Siavash Mirarab Andre J Aberer Bo Li Peter Houde Cai Li Simon Y W Ho Brant C Faircloth Benoit Nabholz Jason T Howard Alexander Suh Claudia C Weber Rute R da Fonseca Jianwen Li Fang Zhang Hui Li Long Zhou Nitish Narula Liang Liu Ganesh Ganapathy Bastien Boussau Md Shamsuzzoha Bayzid Volodymyr Zavidovych Sankar Subramanian Toni Gabaldón Salvador Capella-Gutiérrez Jaime Huerta-Cepas Bhanu Rekepalli Kasper Munch Mikkel Schierup Bent Lindow Wesley C Warren David Ray Richard E Green Michael W Bruford Xiangjiang Zhan Andrew Dixon Shengbin Li Ning Li Yinhua Huang Elizabeth P Derryberry Mads Frost Bertelsen Frederick H Sheldon Robb T Brumfield Claudio V Mello Peter V Lovell Morgan Wirthlin Maria Paula Cruz Schneider Francisco Prosdocimi José Alfredo Samaniego Amhed Missael Vargas Velazquez Alonzo Alfaro-Núñez Paula F Campos Bent Petersen Thomas Sicheritz-Ponten An Pas Tom Bailey Paul Scofield Michael Bunce David M Lambert Qi Zhou Polina Perelman Amy C Driskell Beth Shapiro Zijun Xiong Yongli Zeng Shiping Liu Zhenyu Li Binghang Liu Kui Wu Jin Xiao Xiong Yinqi Qiuemei Zheng Yong Zhang Huanming Yang Jian Wang Linnea Smeds Frank E Rheindt Michael Braun Jon Fjeldsa Ludovic Orlando F Keith Barker Knud Andreas Jønsson Warren Johnson Klaus-Peter Koepfli Stephen O'Brien David Haussler Oliver A Ryder Carsten Rahbek Eske Willerslev Gary R Graves Travis C Glenn John McCormack Dave Burt Hans Ellegren Per Alström Scott V Edwards Alexandros Stamatakis David P Mindell Joel Cracraft Edward L Braun Tandy Warnow Wang Jun M Thomas P Gilbert Guojie Zhang

Science 2014 Dec;346(6215):1320-31

China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China. Centre for Social Evolution, Department of Biology, Universitetsparken 15, University of Copenhagen, DK-2100 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.1253451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405904PMC
December 2014

Late-replicating domains have higher divergence and diversity in Drosophila melanogaster.

Mol Biol Evol 2012 Feb 31;29(2):873-82. Epub 2011 Oct 31.

Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msr265DOI Listing
February 2012

Support for multiple classes of local expression clusters in Drosophila melanogaster, but no evidence for gene order conservation.

Genome Biol 2011 17;12(3):R23. Epub 2011 Mar 17.

Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath, BA2 7AY, UK.

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http://dx.doi.org/10.1186/gb-2011-12-3-r23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129673PMC
January 2012

Intronic AT skew is a defendable proxy for germline transcription but does not predict crossing-over or protein evolution rates in Drosophila melanogaster.

J Mol Evol 2010 Dec 12;71(5-6):415-26. Epub 2010 Oct 12.

Department of Biology and Biochemistry, University of Bath, Bath, UK.

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http://dx.doi.org/10.1007/s00239-010-9395-2DOI Listing
December 2010

Protein rates of evolution are predicted by double-strand break events, independent of crossing-over rates.

Genome Biol Evol 2009 Sep 2;1:340-9. Epub 2009 Sep 2.

Department of Biology and Biochemistry, University of Bath, Bath, Somerset, UK.

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http://dx.doi.org/10.1093/gbe/evp033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2817428PMC
September 2009

Why there is more to protein evolution than protein function: splicing, nucleosomes and dual-coding sequence.

Biochem Soc Trans 2009 Aug;37(Pt 4):756-61

Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, UK.

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http://dx.doi.org/10.1042/BST0370756DOI Listing
August 2009

Aging sensitizes toward ROS formation and lipid peroxidation in PS1M146L transgenic mice.

Free Radic Biol Med 2006 Mar 15;40(5):850-62. Epub 2005 Nov 15.

Department of Pharmacology, Biocentre, University of Frankfurt, Germany.

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http://dx.doi.org/10.1016/j.freeradbiomed.2005.10.041DOI Listing
March 2006