Claire M Fraser

Claire M Fraser

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Claire M Fraser

Claire M Fraser

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Molecular mechanisms of probiotic prevention of antibiotic-associated diarrhea.

Curr Opin Biotechnol 2020 Feb 19;61:226-234. Epub 2020 Feb 19.

Department of Food Science and Technology, University of California, Davis, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.copbio.2020.01.005DOI Listing
February 2020

A Distinct Gut Microbiota Exists Within Crohn's Disease-Related Perianal Fistulae.

J Surg Res 2019 10 7;242:118-128. Epub 2019 May 7.

Department of Surgery, University of Maryland, Baltimore, Maryland. Electronic address:

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http://dx.doi.org/10.1016/j.jss.2019.04.032DOI Listing
October 2019

Intratumor genetic heterogeneity in squamous cell carcinoma of the oral cavity.

Head Neck 2019 08 14;41(8):2514-2524. Epub 2019 Mar 14.

Department of Medicine, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland.

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http://dx.doi.org/10.1002/hed.25719DOI Listing
August 2019

Ghrelin receptor deletion reduces binge-like alcohol drinking in rats.

J Neuroendocrinol 2019 Jul 16;31(7):e12663. Epub 2019 Jan 16.

Section on Clinical Psychoneuroendocrinology and Neuropsychopharmacology, National Institute on Alcohol Abuse and Alcoholism Division of Intramural Clinical and Biological Research, and National Institute on Drug Abuse Intramural Research Program, National Institutes of Health, Bethesda, Maryland.

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http://dx.doi.org/10.1111/jne.12663DOI Listing
July 2019

Primordial origin and diversification of plasmids in Lyme disease agent bacteria.

BMC Genomics 2018 03 27;19(1):218. Epub 2018 Mar 27.

Department of Biology, The Graduate Center, City University of New York, New York, NY, USA.

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http://dx.doi.org/10.1186/s12864-018-4597-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870499PMC
March 2018

Whole-Genome Sequences of Bacteremia Isolates of .

Genome Announc 2017 Sep 28;5(39). Epub 2017 Sep 28.

Department of Pediatrics, Columbia University, New York, New York, USA

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http://dx.doi.org/10.1128/genomeA.01023-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5624759PMC
September 2017

Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1.

Pathog Dis 2016 10 12;74(7). Epub 2016 Aug 12.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA

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http://dx.doi.org/10.1093/femspd/ftw080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407061PMC
October 2016

Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples.

Sci Rep 2016 10 7;6:34850. Epub 2016 Oct 7.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, United States of America.

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http://dx.doi.org/10.1038/srep34850DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5054355PMC
October 2016

The Oral Bacterial Communities of Children with Well-Controlled HIV Infection and without HIV Infection.

PLoS One 2015 6;10(7):e0131615. Epub 2015 Jul 6.

Center for Cancer and Immunology Research, Children's Research Institute, Children's National Medical Center, Washington, DC, United States of America; Departments of Pediatrics and Microbiology, Immunology, and Tropical Medicine, George Washington University School of Medicine, Washington, DC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131615PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492946PMC
April 2016

Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

Authors:
Monika Gulia-Nuss Andrew B Nuss Jason M Meyer Daniel E Sonenshine R Michael Roe Robert M Waterhouse David B Sattelle José de la Fuente Jose M Ribeiro Karine Megy Jyothi Thimmapuram Jason R Miller Brian P Walenz Sergey Koren Jessica B Hostetler Mathangi Thiagarajan Vinita S Joardar Linda I Hannick Shelby Bidwell Martin P Hammond Sarah Young Qiandong Zeng Jenica L Abrudan Francisca C Almeida Nieves Ayllón Ketaki Bhide Brooke W Bissinger Elena Bonzon-Kulichenko Steven D Buckingham Daniel R Caffrey Melissa J Caimano Vincent Croset Timothy Driscoll Don Gilbert Joseph J Gillespie Gloria I Giraldo-Calderón Jeffrey M Grabowski David Jiang Sayed M S Khalil Donghun Kim Katherine M Kocan Juraj Koči Richard J Kuhn Timothy J Kurtti Kristin Lees Emma G Lang Ryan C Kennedy Hyeogsun Kwon Rushika Perera Yumin Qi Justin D Radolf Joyce M Sakamoto Alejandro Sánchez-Gracia Maiara S Severo Neal Silverman Ladislav Šimo Marta Tojo Cristian Tornador Janice P Van Zee Jesús Vázquez Filipe G Vieira Margarita Villar Adam R Wespiser Yunlong Yang Jiwei Zhu Peter Arensburger Patricia V Pietrantonio Stephen C Barker Renfu Shao Evgeny M Zdobnov Frank Hauser Cornelis J P Grimmelikhuijzen Yoonseong Park Julio Rozas Richard Benton Joao H F Pedra David R Nelson Maria F Unger Jose M C Tubio Zhijian Tu Hugh M Robertson Martin Shumway Granger Sutton Jennifer R Wortman Daniel Lawson Stephen K Wikel Vishvanath M Nene Claire M Fraser Frank H Collins Bruce Birren Karen E Nelson Elisabet Caler Catherine A Hill

Nat Commun 2016 Feb 9;7:10507. Epub 2016 Feb 9.

Department of Entomology, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1038/ncomms10507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748124PMC
February 2016

Transcriptional attenuation controls macrolide inducible efflux and resistance in Streptococcus pneumoniae and in other Gram-positive bacteria containing mef/mel(msr(D)) elements.

PLoS One 2015 19;10(2):e0116254. Epub 2015 Feb 19.

Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America; Laboratories of Microbial Pathogenesis, Department of Veterans Affairs Medical Center, Atlanta, Georgia, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0116254PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4335068PMC
January 2016

Potential Influence of Staphylococcus aureus Clonal Complex 30 Genotype and Transcriptome on Hematogenous Infections.

Open Forum Infect Dis 2015 Sep 24;2(3):ofv093. Epub 2015 Jun 24.

Department of Microbiology and Immunology , University of Rochester , New York ; University of Rochester Genomics Research Center , University of Rochester , New York.

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http://dx.doi.org/10.1093/ofid/ofv093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4512144PMC
September 2015

Erratum for Martin et al., Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi Sensu Lato.

mBio 2015 Jul 21;6(4):e00999. Epub 2015 Jul 21.

Department of Biology, The Graduate Center, City University of New York, New York, New York, USA Department of Biological Sciences and Center for Translational and Basic Research, Hunter College, City University of New York, New York, New York, USA

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http://dx.doi.org/10.1128/mBio.00999-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4513086PMC
July 2015

Gut microbiota in multiple sclerosis: possible influence of immunomodulators.

J Investig Med 2015 Jun;63(5):729-34

From the *Baylor Institute for Immunology Research, Baylor Health, Dallas, TX; †Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD; ‡Department of Neurology, UCSF School of Medicine, San Francisco; and §Second Genome Inc, South San Francisco, CA; and ∥Department of Neurology, Johns Hopkins University School of Medicine; and ¶Department of Medicine, University of Maryland School of Medicine, Baltimore, MD.

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http://dx.doi.org/10.1097/JIM.0000000000000192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439263PMC
June 2015

Examination of the Enterotoxigenic Escherichia coli Population Structure during Human Infection.

mBio 2015 Jun 9;6(3):e00501. Epub 2015 Jun 9.

Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA

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http://dx.doi.org/10.1128/mBio.00501-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462620PMC
June 2015

New signaling pathways govern the host response to C. albicans infection in various niches.

Genome Res 2015 May 9;25(5):679-89. Epub 2015 Apr 9.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA;

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http://dx.doi.org/10.1101/gr.187427.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4417116PMC
May 2015

Defining the phylogenomics of Shigella species: a pathway to diagnostics.

J Clin Microbiol 2015 Mar 14;53(3):951-60. Epub 2015 Jan 14.

University of Maryland School of Medicine, Institute for Genome Sciences, Department of Microbiology and Immunology, Baltimore, Maryland, USA

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http://dx.doi.org/10.1128/JCM.03527-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390639PMC
March 2015

Culture-independent evaluation of the appendix and rectum microbiomes in children with and without appendicitis.

PLoS One 2014 23;9(4):e95414. Epub 2014 Apr 23.

Center for Cancer and Immunology Research, Children's Research Institute, Children's National Medical Center, Washington DC, United States of America; Departments of Pediatrics and Microbiology, Immunology, and Tropical Medicine George Washington University, Washington DC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0095414PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3997405PMC
January 2015

BorreliaBase: a phylogeny-centered browser of Borrelia genomes.

BMC Bioinformatics 2014 Jul 3;15:233. Epub 2014 Jul 3.

Department of Biological Sciences, Hunter College, The City University of New York, 10065 New York, NY, USA.

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http://dx.doi.org/10.1186/1471-2105-15-233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4094996PMC
July 2014

Genome sequences of rhinovirus a isolates from wisconsin pediatric respiratory studies.

Genome Announc 2014 Mar 27;2(2). Epub 2014 Mar 27.

Department of Medicine, University of South Florida Morsani College of Medicine, Tampa, Florida, USA.

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http://dx.doi.org/10.1128/genomeA.00200-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968333PMC
March 2014

Genome sequences of rhinovirus B isolates from wisconsin pediatric respiratory studies.

Genome Announc 2014 Mar 27;2(2). Epub 2014 Mar 27.

Department of Medicine, University of South Florida Morsani College of Medicine, Tampa, Florida, USA.

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http://dx.doi.org/10.1128/genomeA.00202-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968335PMC
March 2014

Genome sequences of rhinovirus C isolates from wisconsin pediatric respiratory studies.

Genome Announc 2014 Mar 27;2(2). Epub 2014 Mar 27.

Department of Medicine, University of South Florida, Morsani College of Medicine, Tampa, Florida, USA.

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http://dx.doi.org/10.1128/genomeA.00203-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968336PMC
March 2014

Comparative genomics and stx phage characterization of LEE-negative Shiga toxin-producing Escherichia coli.

Front Cell Infect Microbiol 2012 7;2:133. Epub 2012 Nov 7.

Department of Microbiology and Immunology, University of Maryland School of Medicine, Institute for Genome Sciences Baltimore, MD, USA.

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http://dx.doi.org/10.3389/fcimb.2012.00133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491183PMC
December 2013

Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli.

Proc Natl Acad Sci U S A 2013 Jul 15;110(31):12810-5. Epub 2013 Jul 15.

Institute for Genome Sciences, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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http://dx.doi.org/10.1073/pnas.1306836110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3732946PMC
July 2013

Draft Genome Sequences of Three O157 Enteropathogenic Escherichia coli Isolates.

Genome Announc 2013 Jul 18;1(4). Epub 2013 Jul 18.

Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1128/genomeA.00516-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715677PMC
July 2013

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.

Genome Announc 2013 Feb 28;1(2):e0013412. Epub 2013 Feb 28.

University of Texas at San Antonio, Department of Biology, and South Texas Center for Emerging Infectious Diseases, San Antonio, Texas, USA.

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http://dx.doi.org/10.1128/genomeA.00134-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593324PMC
February 2013

Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications.

Cell Host Microbe 2012 Nov;12(5):611-22

The Wallenberg Laboratory, University of Gothenburg, Sahlgrenska University Hospital, Göteborg, Sweden 41345.

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http://dx.doi.org/10.1016/j.chom.2012.10.012DOI Listing
November 2012

Genetic analysis and attribution of microbial forensics evidence.

Crit Rev Microbiol 2005 ;31(4):233-54

FBI Laboratory, Quantico, Virginia 22135, USA.

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http://dx.doi.org/10.1080/10408410500304082DOI Listing
March 2006

Genomes and evolution: the power of comparative genomics.

Curr Opin Genet Dev 2005 Dec 24;15(6):569-71. Epub 2005 Oct 24.

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http://dx.doi.org/10.1016/j.gde.2005.10.001DOI Listing
December 2005

How genomics has affected the concept of microbiology.

Curr Opin Microbiol 2005 Oct;8(5):564-71

The Institute for Genomic Research, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1016/j.mib.2005.08.011DOI Listing
October 2005

Application of microbial genomic science to advanced therapeutics.

Annu Rev Med 2005 ;56:459-74

The Institute for Genomic Research, Rockville, Maryland 20850, USA.

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http://dx.doi.org/10.1146/annurev.med.56.062904.144853DOI Listing
July 2005

The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.

Science 2005 Jul;309(5733):409-15

Department of Parasite Genomics, Institute for Genomic Research, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1126/science.1112631DOI Listing
July 2005

The genome of the African trypanosome Trypanosoma brucei.

Authors:
Matthew Berriman Elodie Ghedin Christiane Hertz-Fowler Gaëlle Blandin Hubert Renauld Daniella C Bartholomeu Nicola J Lennard Elisabet Caler Nancy E Hamlin Brian Haas Ulrike Böhme Linda Hannick Martin A Aslett Joshua Shallom Lucio Marcello Lihua Hou Bill Wickstead U Cecilia M Alsmark Claire Arrowsmith Rebecca J Atkin Andrew J Barron Frederic Bringaud Karen Brooks Mark Carrington Inna Cherevach Tracey-Jane Chillingworth Carol Churcher Louise N Clark Craig H Corton Ann Cronin Rob M Davies Jonathon Doggett Appolinaire Djikeng Tamara Feldblyum Mark C Field Audrey Fraser Ian Goodhead Zahra Hance David Harper Barbara R Harris Heidi Hauser Jessica Hostetler Al Ivens Kay Jagels David Johnson Justin Johnson Kristine Jones Arnaud X Kerhornou Hean Koo Natasha Larke Scott Landfear Christopher Larkin Vanessa Leech Alexandra Line Angela Lord Annette Macleod Paul J Mooney Sharon Moule David M A Martin Gareth W Morgan Karen Mungall Halina Norbertczak Doug Ormond Grace Pai Chris S Peacock Jeremy Peterson Michael A Quail Ester Rabbinowitsch Marie-Adele Rajandream Chris Reitter Steven L Salzberg Mandy Sanders Seth Schobel Sarah Sharp Mark Simmonds Anjana J Simpson Luke Tallon C Michael R Turner Andrew Tait Adrian R Tivey Susan Van Aken Danielle Walker David Wanless Shiliang Wang Brian White Owen White Sally Whitehead John Woodward Jennifer Wortman Mark D Adams T Martin Embley Keith Gull Elisabetta Ullu J David Barry Alan H Fairlamb Fred Opperdoes Barclay G Barrell John E Donelson Neil Hall Claire M Fraser Sara E Melville Najib M El-Sayed

Science 2005 Jul;309(5733):416-22

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.

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http://dx.doi.org/10.1126/science.1112642DOI Listing
July 2005

Genomics at the genus scale.

Trends Microbiol 2005 Mar;13(3):95-7

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1016/j.tim.2005.01.004DOI Listing
March 2005

A virus with big ambitions.

Trends Microbiol 2005 Feb;13(2):56-7

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1016/j.tim.2004.12.008DOI Listing
February 2005

It's a cold world out there (but the prospects are hot).

Trends Microbiol 2004 Dec;12(12):532-4

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1016/j.tim.2004.10.007DOI Listing
December 2004

An audience with Claire M. Fraser.

Authors:
Claire M Fraser

Nat Rev Drug Discov 2004 Dec;3(12):992

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http://dx.doi.org/10.1038/nrd1598DOI Listing
December 2004

Insights into the evolution of phytopathogens.

Authors:
Claire M Fraser

Trends Microbiol 2004 Nov;12(11):482-3

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1016/j.tim.2004.09.001DOI Listing
November 2004

Roll with the flow: microbial masters of redox chemistry.

Trends Microbiol 2004 Oct;12(10):439-41

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1016/j.tim.2004.08.004DOI Listing
October 2004

An integrated 4249 marker FISH/RH map of the canine genome.

BMC Genomics 2004 Sep 13;5:65. Epub 2004 Sep 13.

Department of Molecular Biomedical Sciences, College of Veterinary Medicine, North Carolina State University, 4700 Hillsborough Street, Raleigh, NC 27606, USA.

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http://dx.doi.org/10.1186/1471-2164-5-65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC520820PMC
September 2004

Genetic exchange and plasmid transfers in Borrelia burgdorferi sensu stricto revealed by three-way genome comparisons and multilocus sequence typing.

Proc Natl Acad Sci U S A 2004 Sep 16;101(39):14150-5. Epub 2004 Sep 16.

Department of Biological Sciences, Hunter College of the City University of New York, 695 Park Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1073/pnas.0402745101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC521097PMC
September 2004