Publications by authors named "Claire Hoede"

19Publications

Widely rhythmic transcriptome in during the high Arctic summer solstice period.

iScience 2021 Jan 11;24(1):101927. Epub 2020 Dec 11.

Institute for Chemistry and Biology of the Marine Environment, Carl von Ossietzky University of Oldenburg, Oldenburg, 26111, Germany.

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January 2021

Daily transcriptomes of the copepod Calanus finmarchicus during the summer solstice at high Arctic latitudes.

Sci Data 2020 11 24;7(1):415. Epub 2020 Nov 24.

Institute for Chemistry and Biology of the Marine Environment, Carl von Ossietzky University of Oldenburg, Oldenburg, 26111, Germany.

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November 2020

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria.

BMC Genomics 2017 Nov 16;18(1):882. Epub 2017 Nov 16.

Université de Toulouse, INRA, UR 875 Unité Mathématiques et Informatique Appliquées de Toulouse, Auzeville, 31326, Castanet-Tolosan, France.

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November 2017

A comparative transcriptomic approach to understanding the formation of cork.

Plant Mol Biol 2018 Jan 15;96(1-2):103-118. Epub 2017 Nov 15.

Laboratori del Suro, Faculty of Science, Biology Department, Universitat de Girona, C/ Maria Aurèlia Campmany 40, 17003, Girona, Spain.

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January 2018

Listeriomics: an Interactive Web Platform for Systems Biology of .

mSystems 2017 Mar-Apr;2(2). Epub 2017 Mar 14.

Département de Biologie Cellulaire et Infection, Institut Pasteur, Unité des Interactions Bactéries-Cellules, Paris, France; INSERM, U604, Paris, France; INRA, USC2020, Paris, France.

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March 2017

Links between Transcription, Environmental Adaptation and Gene Variability in Escherichia coli: Correlations between Gene Expression and Gene Variability Reflect Growth Efficiencies.

Mol Biol Evol 2016 10 28;33(10):2515-29. Epub 2016 Jun 28.

INSERM, UMR 1137, Infection, Antimicrobiens, Modélisation, Evolution (IAME), Paris, France Faculté de Médecine, Universités Paris Diderot et Paris Nord-Sorbonne Paris Cité, Paris, France

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October 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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July 2015

RNAbrowse: RNA-Seq de novo assembly results browser.

PLoS One 2014 13;9(5):e96821. Epub 2014 May 13.

Plate-forme bio-informatique Genotoul/Biométrie et Intelligence Artificielle, INRA, Castanet-Tolosan, France; Plate-forme SIGENAE/Génétique Cellulaire, INRA, Castanet-Tolosan, France.

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January 2015

PASTEC: an automatic transposable element classification tool.

PLoS One 2014 2;9(5):e91929. Epub 2014 May 2.

INRA, UR1164 URGI - Research Unit in Genomics-Info, Versailles, France.

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December 2014

Animal and human pathogenic Escherichia coli strains share common genetic backgrounds.

Infect Genet Evol 2011 Apr 13;11(3):654-62. Epub 2011 Feb 13.

UMR722, INSERM and Université Paris Diderot, Site Xavier Bichat, 16 rue Henri Huchard, Paris, France.

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April 2011

Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment.

J Virol 2007 Jul 9;81(14):7620-8. Epub 2007 May 9.

INSERM U 552, Université Paris 7 - Denis Diderot, Faculté de Médecine Xavier Bichat, Paris, France.

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July 2007

Selection acts on DNA secondary structures to decrease transcriptional mutagenesis.

PLoS Genet 2006 Nov 1;2(11):e176. Epub 2006 Sep 1.

INSERM U722 and Université Paris 7--Denis Diderot, Faculté de Médecine, Site Xavier Bichat, Paris, France.

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November 2006