Cinque S Soto

Cinque S Soto

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Cinque S Soto

Cinque S Soto

Publications by authors named "Cinque S Soto"

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12Publications

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Assembly of the transmembrane domain of E. coli PhoQ histidine kinase: implications for signal transduction from molecular simulations.

PLoS Comput Biol 2013 24;9(1):e1002878. Epub 2013 Jan 24.

Laboratory for Biomolecular Modeling, Institute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1371/journal.pcbi.1002878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3554529PMC
June 2013

A photon-free approach to transmembrane protein structure determination.

J Mol Biol 2011 Dec 15;414(4):596-610. Epub 2011 Oct 15.

Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.jmb.2011.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3808161PMC
December 2011

Molecular basis of ChvE function in sugar binding, sugar utilization, and virulence in Agrobacterium tumefaciens.

J Bacteriol 2009 Sep 24;191(18):5802-13. Epub 2009 Jul 24.

Plant Science Institute, Department of Biology, University of Pennsylvania, Philadelphia, PA 19104-6018, USA.

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http://dx.doi.org/10.1128/JB.00451-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2737963PMC
September 2009

pH-induced conformational change of the influenza M2 protein C-terminal domain.

Biochemistry 2008 Sep 29;47(38):9934-6. Epub 2008 Aug 29.

Department of Chemistry and Biochemistry, Swarthmore College, Swarthmore, Pennsylvania 19081, USA.

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http://dx.doi.org/10.1021/bi801315mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2746938PMC
September 2008

Identification of the pore-lining residues of the BM2 ion channel protein of influenza B virus.

J Biol Chem 2008 Jun 11;283(23):15921-31. Epub 2008 Apr 11.

Department of Neurobiology and Physiology, and Howard Hughes Medical Institute, Northwestern University, Evanston, Illinois 60208-3500, USA.

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http://dx.doi.org/10.1074/jbc.M710302200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2414288PMC
June 2008

Determination of the physiological dimer interface of the PhoQ sensor domain.

J Mol Biol 2008 Jun 16;379(4):656-65. Epub 2008 Apr 16.

Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.jmb.2008.04.023DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2542651PMC
June 2008

Loop modeling: Sampling, filtering, and scoring.

Proteins 2008 Feb;70(3):834-43

Howard Hughes Medical Institute, Center for Computational Biology and Bioinformatics, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.

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http://dx.doi.org/10.1002/prot.21612DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553011PMC
February 2008

Structural basis for the function and inhibition of an influenza virus proton channel.

Nature 2008 Jan;451(7178):596-9

Department of Biochemistry and Biophysics, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1038/nature06528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889492PMC
January 2008

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling.

Proteins 2003 ;53 Suppl 6:430-5

Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Center for Computational Biology and Bioinformatics, Columbia University New York, New York 10032, USA.

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http://dx.doi.org/10.1002/prot.10550DOI Listing
January 2004

Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction.

Proc Natl Acad Sci U S A 2002 May;99(11):7432-7

Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, New York, NY 10032, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.102179699
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http://dx.doi.org/10.1073/pnas.102179699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC124248PMC
May 2002