Chunhua Weng

Chunhua Weng

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Chunhua Weng

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Diagnostic Utility of Exome Sequencing for Kidney Disease.

N Engl J Med 2019 01 26;380(2):142-151. Epub 2018 Dec 26.

From the Departments of Medicine (E.E.G., M.M., H.M.-R., Y.L., J.Z., J.N., P.K., W.Y.L., A.M., S. Piva, B.H.K., D.C., R.R., D.B., M.D., H.S., X.M., K.M., O.B., J.R., P.C., G.B.A., A.S.B., W.A., D.J.C., R.J.C., G.K.D., M.K.R., S.M., S.S.-C., K.K., A.G.G.) and Pediatrics (N.S.U.), Division of Nephrology, the Departments of Pathology (V.S.A.), Biomedical Informatics (D.A.F., C.W.), and Urology (S.A.), the Institute for Genomic Medicine (S.K., B.C., Z.R., J.B., C.D.M., C.M.M., N.D., D.B.G., A.G.G.) and the Department of Genetics and Development (D.B.G.), Hammer Health Sciences, and the Department of Epidemiology, Mailman School of Public Health (S.M.), Columbia University, New York; AstraZeneca Centre for Genomics Research, Precision Medicine and Genomics, Innovative Medicines and Early Development (IMED) Biotech Unit, Cambridge, United Kingdom (S.C.-C., S. Petrovski, C.H., J.F., R.M., A.P.); and the Department of Medical Science, Renal Unit, Uppsala University Hospital, Uppsala, Sweden (B.C.F.).

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http://www.nejm.org/doi/10.1056/NEJMoa1806891
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http://dx.doi.org/10.1056/NEJMoa1806891DOI Listing
January 2019

A method for harmonization of clinical abbreviation and acronym sense inventories.

J Biomed Inform 2018 Dec 7;88:62-69. Epub 2018 Nov 7.

Department of Biomedical Informatics, Columbia University, New York, NY, USA; Value Institute, NewYork-Presbyterian Hospital, New York, NY, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S15320464183021
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http://dx.doi.org/10.1016/j.jbi.2018.11.004DOI Listing
December 2018

Call for papers: Deep phenotyping for Precision Medicine.

J Biomed Inform 2018 Nov 29;87:66-67. Epub 2018 Sep 29.

Department of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15320464183019
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http://dx.doi.org/10.1016/j.jbi.2018.09.017DOI Listing
November 2018

The regulatory network of miR-141 in the inhibition of angiogenesis.

Angiogenesis 2018 Nov 21. Epub 2018 Nov 21.

Institute of Environmental Medicine, and Cancer Center of the First Affiliated Hospital, Zhejiang University School of Medicine, 866 Yuhangtang Road, Hangzhou, 310058, China.

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http://dx.doi.org/10.1007/s10456-018-9654-1DOI Listing
November 2018

Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records.

Sci Data 2018 Nov 27;5:180273. Epub 2018 Nov 27.

Department of Biomedical Informatics, Columbia University, NY, USA.

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http://dx.doi.org/10.1038/sdata.2018.273DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6257042PMC
November 2018

Trends in anesthesiology research: a machine learning approach to theme discovery and summarization.

JAMIA Open 2018 Oct 4;1(2):283-293. Epub 2018 Sep 4.

Department of Biomedical Informatics, Columbia University, New York, New York, USA.

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https://academic.oup.com/jamiaopen/article/1/2/283/5090694
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http://dx.doi.org/10.1093/jamiaopen/ooy009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6241511PMC
October 2018

Urinary C‑X‑C motif chemokine 13 is a noninvasive biomarker of antibody‑mediated renal allograft rejection.

Mol Med Rep 2018 Aug 22;18(2):2399-2406. Epub 2018 Jun 22.

Kidney Disease Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, Zhejiang 310003, P.R. China.

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http://dx.doi.org/10.3892/mmr.2018.9211DOI Listing
August 2018

Post-publication peer review and evidence appraisals in primary care.

Lancet 2018 08;392(10145):386

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/S0140-6736(18)31197-8DOI Listing
August 2018

Deep Phenotyping on Electronic Health Records Facilitates Genetic Diagnosis by Clinical Exomes.

Am J Hum Genet 2018 Jul 28;103(1):58-73. Epub 2018 Jun 28.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA; Institute for Genomic Medicine, Columbia University, New York, NY 10032, USA; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Biomedical and Health Informatics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2018.05.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6035281PMC
July 2018

An OMOP CDM-Based Relational Database of Clinical Research Eligibility Criteria.

Stud Health Technol Inform 2017 ;245:950-954

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5893219PMC
June 2018

The Data Gap in the EHR for Clinical Research Eligibility Screening.

AMIA Jt Summits Transl Sci Proc 2018 18;2017:320-329. Epub 2018 May 18.

Department of Biomedical Informatics, Columbia University, New York City, New York.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961795PMC
May 2018

Exploration of Temporal ICD Coding Bias Related to Acute Diabetic Conditions.

AMIA Annu Symp Proc 2015 5;2015:2005-14. Epub 2015 Nov 5.

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765601PMC
April 2018

Desiderata for Major Eligibility Criteria in Breast Cancer Clinical Trials.

AMIA Annu Symp Proc 2015 5;2015:2025-34. Epub 2015 Nov 5.

Department of Biomedical Informatics, Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765677PMC
April 2018

The ranking of scientists.

J Biomed Inform 2018 03 15;79:145-146. Epub 2018 Feb 15.

Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY USA.

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http://dx.doi.org/10.1016/j.jbi.2018.02.006DOI Listing
March 2018

Simulation-based Evaluation of the Generalizability Index for Study Traits.

AMIA Annu Symp Proc 2015 5;2015:594-603. Epub 2015 Nov 5.

Department of Biomedical Informatics, Columbia University, New York, NY USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765558PMC
January 2018

Quality Assurance of Cancer Study Common Data Elements Using A Post-Coordination Approach.

AMIA Annu Symp Proc 2015 5;2015:659-68. Epub 2015 Nov 5.

Johns Hopkins University, Baltimore, MN.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765658PMC
January 2018

Initial Readability Assessment of Clinical Trial Eligibility Criteria.

AMIA Annu Symp Proc 2015 5;2015:687-96. Epub 2015 Nov 5.

Department of Biomedical Informatics, Columbia University, New York, NY 10032.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765646PMC
January 2018

Systematic data ingratiation of clinical trial recruitment locations for geographic-based query and visualization.

Int J Med Inform 2017 12 4;108:85-91. Epub 2017 Oct 4.

Department of Biomedical Informatics, Columbia University, New York City, NY, United States.

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https://linkinghub.elsevier.com/retrieve/pii/S13865056173035
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http://dx.doi.org/10.1016/j.ijmedinf.2017.10.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5866921PMC
December 2017

EliIE: An open-source information extraction system for clinical trial eligibility criteria.

J Am Med Inform Assoc 2017 Nov;24(6):1062-1071

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1093/jamia/ocx019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6259668PMC
November 2017

Evidence appraisal: a scoping review, conceptual framework, and research agenda.

J Am Med Inform Assoc 2017 Nov;24(6):1192-1203

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1093/jamia/ocx050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6259661PMC
November 2017

A conceptual framework for evaluating data suitability for observational studies.

J Am Med Inform Assoc 2017 Sep 8. Epub 2017 Sep 8.

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1093/jamia/ocx095DOI Listing
September 2017

The representativeness of eligible patients in type 2 diabetes trials: a case study using GIST 2.0.

J Am Med Inform Assoc 2017 Sep 13. Epub 2017 Sep 13.

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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https://academic.oup.com/jamia/article/25/3/239/4157244
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http://dx.doi.org/10.1093/jamia/ocx091DOI Listing
September 2017

A Data Quality Assessment Guideline for Electronic Health Record Data Reuse.

EGEMS (Wash DC) 2017 Sep 4;5(1):14. Epub 2017 Sep 4.

Department of Biomedical Informatics, Columbia University.

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http://dx.doi.org/10.5334/egems.218DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5983018PMC
September 2017

SMASH: A Data-driven Informatics Method to Assist Experts in Characterizing Semantic Heterogeneity among Data Elements.

AMIA Annu Symp Proc 2016 10;2016:1717-1726. Epub 2017 Feb 10.

Department of Biomedical Informatics, Columbia University, New York, NY; School of Nursing, Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333258PMC
August 2017

A survey of practices for the use of electronic health records to support research recruitment.

J Clin Transl Sci 2017 Aug;1(4):246-252

NC Translational and Clinical Sciences Institute, University of North Carolina School of Medicine, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1017/cts.2017.301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5890320PMC
August 2017

Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:221-228. Epub 2017 Jul 26.

Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543347PMC
July 2017

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.

J Biomed Semantics 2017 Jun 5;8(1):19. Epub 2017 Jun 5.

Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN, 55905, USA.

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http://dx.doi.org/10.1186/s13326-017-0130-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460361PMC
June 2017

An Interoperable Similarity-based Cohort Identification Method Using the OMOP Common Data Model version 5.0.

J Healthc Inform Res 2017 Jun 8;1(1):1-18. Epub 2017 Jun 8.

Department of Biomedical Informatics, Columbia University, New York NY 10032.

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http://dx.doi.org/10.1007/s41666-017-0005-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5536903PMC
June 2017

Similarity-Based Recommendation of New Concepts to a Terminology.

AMIA Annu Symp Proc 2015;2015:386-95. Epub 2015 Nov 5.

Department of Biomedical Informatics, Columbia University, New York, NY USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765685PMC
February 2017

Correlating eligibility criteria generalizability and adverse events using Big Data for patients and clinical trials.

Ann N Y Acad Sci 2017 01 6;1387(1):34-43. Epub 2016 Sep 6.

Department of Biomedical Informatics, Columbia University, New York, New York.

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http://dx.doi.org/10.1111/nyas.13195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5266625PMC
January 2017

Assessing the Collective Population Representativeness of Related Type 2 Diabetes Trials by Combining Public Data from ClinicalTrials.gov and NHANES.

Stud Health Technol Inform 2015 ;216:569-73

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4586087PMC
December 2016

Use of Self-Service Query Tools Varies by Experience and Research Knowledge.

Stud Health Technol Inform 2015 ;216:1023

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684252PMC
December 2016

IDENTIFICATION OF QUESTIONABLE EXCLUSION CRITERIA IN MENTAL DISORDER CLINICAL TRIALS USING A MEDICAL ENCYCLOPEDIA.

Pac Symp Biocomput 2016 ;21:219-30

Department of Biomedical Informatics, Columbia University, 622 West 168 Street, PH-20, New York, NY, 10032, USA,

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4717913PMC
October 2016

NMDA receptors participate in the progression of diabetic kidney disease by decreasing Cdc42-GTP activation in podocytes.

J Pathol 2016 10 24;240(2):149-60. Epub 2016 Aug 24.

Kidney Disease Center, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.

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http://dx.doi.org/10.1002/path.4764DOI Listing
October 2016

Automated learning of domain taxonomies from text using background knowledge.

J Biomed Inform 2016 10 3;63:295-306. Epub 2016 Sep 3.

Department of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077645PMC
http://dx.doi.org/10.1016/j.jbi.2016.09.002DOI Listing
October 2016

GIST 2.0: A scalable multi-trait metric for quantifying population representativeness of individual clinical studies.

J Biomed Inform 2016 10 4;63:325-336. Epub 2016 Sep 4.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, United States. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077682PMC
http://dx.doi.org/10.1016/j.jbi.2016.09.003DOI Listing
October 2016

Learning Optimal Individualized Treatment Rules from Electronic Health Record Data.

IEEE Int Conf Healthc Inform 2016 Oct 8;2016:65-71. Epub 2016 Dec 8.

Department of Biostatistics, University at North Carolina at Chapel Hill.

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http://www.bios.unc.edu/~dzeng/Pub/EHROLearning1.pdf
Web Search
http://ieeexplore.ieee.org/document/7776329/
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http://dx.doi.org/10.1109/ICHI.2016.13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423731PMC
October 2016

A multi-site cognitive task analysis for biomedical query mediation.

Int J Med Inform 2016 09 16;93:74-84. Epub 2016 Jun 16.

Department of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ijmedinf.2016.06.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4957698PMC
September 2016

Bacterial clinical infectious diseases ontology (BCIDO) dataset.

Data Brief 2016 Sep 16;8:881-4. Epub 2016 Jul 16.

Department of Biomedical Informatics, Columbia University Medical Center, 622 West 168th Street, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/j.dib.2016.07.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961784PMC
September 2016

How Have Cancer Clinical Trial Eligibility Criteria Evolved Over Time?

AMIA Jt Summits Transl Sci Proc 2016 20;2016:269-78. Epub 2016 Jul 20.

Department of Biomedical Informatics, Columbia University, New York, NY USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001741PMC
August 2016

A data-driven concept schema for defining clinical research data needs.

Int J Med Inform 2016 Jul 2;91:1-9. Epub 2016 Apr 2.

Department of Biomedical Informatics, Columbia University, NY, New York, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ijmedinf.2016.03.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873775PMC
July 2016

Leveraging dialog systems research to assist biomedical researchers' interrogation of Big Clinical Data.

J Biomed Inform 2016 06 8;61:176-84. Epub 2016 Apr 8.

Department of Biomedical Informatics, Columbia University, 622 W. 168th Street, New York, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2016.04.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5875984PMC
June 2016

Valx: A System for Extracting and Structuring Numeric Lab Test Comparison Statements from Text.

Methods Inf Med 2016 May 4;55(3):266-75. Epub 2016 Mar 4.

Chunhua Weng, Ph.D., Department of Biomedical Informatics, Columbia University, New York City, 622 W 168th Street, PH-20, New York, NY 10032, USA, E-mail:

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http://dx.doi.org/10.3414/ME15-01-0112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5573874PMC
May 2016

Multivariate analysis of the population representativeness of related clinical studies.

J Biomed Inform 2016 Apr 25;60:66-76. Epub 2016 Jan 25.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA; Observational Health Data Sciences and Informatics, New York, NY 10032, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S15320464160000
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http://dx.doi.org/10.1016/j.jbi.2016.01.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837055PMC
April 2016

Prediction of black box warning by mining patterns of Convergent Focus Shift in clinical trial study populations using linked public data.

J Biomed Inform 2016 Apr 3;60:132-44. Epub 2016 Feb 3.

Department of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2016.01.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837034PMC
April 2016

Facilitating biomedical researchers' interrogation of electronic health record data: Ideas from outside of biomedical informatics.

J Biomed Inform 2016 Apr 10;60:376-84. Epub 2016 Mar 10.

Department of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2016.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837021PMC
April 2016

DREAM: Classification scheme for dialog acts in clinical research query mediation.

J Biomed Inform 2016 Feb 30;59:89-101. Epub 2015 Nov 30.

Department of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2015.11.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792720PMC
February 2016

MicroRNA-409-3p suppresses colorectal cancer invasion and metastasis partly by targeting GAB1 expression.

Int J Cancer 2015 Nov 4;137(10):2310-22. Epub 2015 Jun 4.

Institute of Environmental Health, Zhejiang University School of Public Health, Hangzhou, China.

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http://dx.doi.org/10.1002/ijc.29607DOI Listing
November 2015

Optimizing Clinical Research Participant Selection with Informatics.

Authors:
Chunhua Weng

Trends Pharmacol Sci 2015 Nov;36(11):706-709

Department of Biomedical Informatics, Columbia University, 622 W 168 Street, PH-20, Room 407, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tips.2015.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686428PMC
November 2015

Combining expert knowledge and knowledge automatically acquired from electronic data sources for continued ontology evaluation and improvement.

J Biomed Inform 2015 Oct 23;57:42-52. Epub 2015 Jul 23.

Department of Biomedical Informatics, Columbia University Medical Center, 622 West 168th Street, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2015.07.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724344PMC
October 2015

Could Patient Self-reported Health Data Complement EHR for Phenotyping?

AMIA Annu Symp Proc 2014 14;2014:1738-47. Epub 2014 Nov 14.

Department of Biomedical Informatics, Columbia University, New York City, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419899PMC
September 2015

A method for analyzing commonalities in clinical trial target populations.

AMIA Annu Symp Proc 2014 14;2014:1777-86. Epub 2014 Nov 14.

Department of Biomedical Informatics, Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419878PMC
September 2015

What Is Asked in Clinical Data Request Forms? A Multi-site Thematic Analysis of Forms Towards Better Data Access Support.

AMIA Annu Symp Proc 2014 14;2014:616-25. Epub 2014 Nov 14.

Dept. of Biomedical Informatics, Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419980PMC
August 2015

Research Data Explorer: Lessons Learned in Design and Development of Context-based Cohort Definition and Selection.

AMIA Jt Summits Transl Sci Proc 2015 25;2015:194-8. Epub 2015 Mar 25.

Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4525259PMC
August 2015

Predicting New Target Conditions for Drug Retesting Using Temporal Patterns in Clinical Trials: A Proof of Concept.

Authors:
Zhe He Chunhua Weng

AMIA Jt Summits Transl Sci Proc 2015 25;2015:445-9. Epub 2015 Mar 25.

Department of Biomedical Informatics, Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4525223PMC
August 2015

Enhancing electronic health records to support clinical research.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:102-8. Epub 2014 Apr 7.

Laboratory for Informatics Development, NIH Clinical Center, Bethesda, MD ; Columbia University Department of Biomedical Informatics, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419762PMC
May 2015

Temporal analysis of the usage log of a research networking system.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:116-22. Epub 2014 Apr 7.

The Irving Institute for Clinical and Translational Research, Columbia University, New York, New York, USA ; Department of Biomedical Informatics, Columbia University, New York, New York, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419755PMC
May 2015

Toward a cognitive task analysis for biomedical query mediation.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:218-22. Epub 2014 Apr 7.

Department of Biomedical Informatics, Columbia University, New York City.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419754PMC
May 2015

Cross-system evaluation of clinical trial search engines.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:223-9. Epub 2014 Apr 7.

Department of Biomedical Informatics, Columbia University, New York, NY 10032.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419768PMC
May 2015

A method for probing disease relatedness using common clinical eligibility criteria.

Stud Health Technol Inform 2013 ;192:481-5

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3803102PMC
April 2015

Extending VIVO ontology to represent research and educational resources in an academic biomedical informatics department.

Stud Health Technol Inform 2013 ;192:1206

Department of Biomedical Informatics, Columbia University, New York, NY, USA 10032.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4005926PMC
April 2015

Visual aggregate analysis of eligibility features of clinical trials.

J Biomed Inform 2015 Apr 20;54:241-55. Epub 2015 Jan 20.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2015.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408222PMC
April 2015

Case-based reasoning using electronic health records efficiently identifies eligible patients for clinical trials.

J Am Med Inform Assoc 2015 Apr 13;22(e1):e141-50. Epub 2015 Mar 13.

Department of Biomedical Informatics The Irving Institute for Clinical and Translational Research, Columbia University, New York, NY 10032, USA

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http://dx.doi.org/10.1093/jamia/ocu050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4428438PMC
April 2015

Considerations for using research data to verify clinical data accuracy.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:211-7. Epub 2014 Apr 7.

Intermountain Healthcare, Salt Lake City, UT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333689PMC
February 2015

From expert-derived user needs to user-perceived ease of use and usefulness: a two-phase mixed-methods evaluation framework.

J Biomed Inform 2014 Dec 12;52:141-50. Epub 2013 Dec 12.

Department of Biomedical Informatics, Columbia University, New York, NY, USA; The Irving Institute for Clinical and Translational Research, Columbia University, New York, NY, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15320464130019
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http://dx.doi.org/10.1016/j.jbi.2013.12.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4055529PMC
December 2014

Clustering clinical trials with similar eligibility criteria features.

J Biomed Inform 2014 Dec 1;52:112-20. Epub 2014 Feb 1.

Department of Biomedical Informatics, Columbia University, New York, NY, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2014.01.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4119097PMC
December 2014

Associating co-authorship patterns with publications in high-impact journals.

J Biomed Inform 2014 Dec 19;52:311-8. Epub 2014 Jul 19.

Department of Biomedical Informatics, Columbia University, New York City, United States; The Irving Institute for Clinical and Translational Research, Columbia University, New York City, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2014.07.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260991PMC
December 2014

Automatic generation of investigator bibliographies for institutional research networking systems.

J Biomed Inform 2014 Oct 30;51:8-14. Epub 2014 Mar 30.

Department of Biomedical Informatics, Columbia University, New York, United States; The Irving Institute for Clinical and Translational Research, Columbia University, New York, United States.

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http://dx.doi.org/10.1016/j.jbi.2014.03.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180817PMC
October 2014

Absence of pancreatic intraepithelial neoplasia predicts poor survival after resection of pancreatic cancer.

Pancreas 2014 Oct;43(7):1073-7

From the *Department of Medicine, Columbia University, New York, NY; †Department of Medicine, Henry D. Janowitz Division of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY; Departments of ‡Pathology and Cell Biology and §Biomedical Informatics, Columbia University, New York, NY; ∥Department of Medicine, Stanford University, Stanford, CA; ¶Department of Medicine, Keck School of Medicine of University of Southern California, Los Angeles, CA; and #Department of Surgery, Columbia University, New York, NY.

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http://dx.doi.org/10.1097/MPA.0000000000000161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161626PMC
October 2014

Trend and Network Analysis of Common Eligibility Features for Cancer Trials in ClinicalTrials.gov.

Smart Health (2014) 2014 Jul;8549:130-141

Department of Biomedical Informatics, Columbia University, New York City, USA.

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http://dx.doi.org/10.1007/978-3-319-08416-9_13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4795902PMC
July 2014

Hidden in plain sight: bias towards sick patients when sampling patients with sufficient electronic health record data for research.

BMC Med Inform Decis Mak 2014 Jun 11;14:51. Epub 2014 Jun 11.

Department of Biomedical Informatics, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1186/1472-6947-14-51DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4062889PMC
June 2014

Design and evaluation of a bacterial clinical infectious diseases ontology.

AMIA Annu Symp Proc 2013 16;2013:502-11. Epub 2013 Nov 16.

Department of Biomedical Informatics, Columbia University, New York.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3900194PMC
May 2014

Sick patients have more data: the non-random completeness of electronic health records.

AMIA Annu Symp Proc 2013 16;2013:1472-7. Epub 2013 Nov 16.

Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3900159PMC
May 2014

eTACTS: a method for dynamically filtering clinical trial search results.

J Biomed Inform 2013 Dec 3;46(6):1060-7. Epub 2013 Aug 3.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, United States.

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http://dx.doi.org/10.1016/j.jbi.2013.07.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843999PMC
December 2013

Defining a comprehensive verotype using electronic health records for personalized medicine.

J Am Med Inform Assoc 2013 Dec 3;20(e2):e232-8. Epub 2013 Sep 3.

Department of Biomedical Informatics, Columbia University, New York, New York, USA.

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http://dx.doi.org/10.1136/amiajnl-2013-001932DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3861934PMC
December 2013

Unsupervised mining of frequent tags for clinical eligibility text indexing.

J Biomed Inform 2013 Dec 10;46(6):1145-51. Epub 2013 Sep 10.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/j.jbi.2013.08.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843986PMC
December 2013

Characterization of the biomedical query mediation process.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:89-93. Epub 2013 Mar 18.

Department of Biomedical Informatics, Columbia University, New York, NY 10032.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845777PMC
December 2013

Towards dynamic and interactive retrieval of clinical trials using common eligibility features.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:182. Epub 2013 Mar 18.

Department of Biomedical Informatics, Columbia University, New York, NY.

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December 2013

Evaluation considerations for EHR-based phenotyping algorithms: A case study for drug-induced liver injury.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:130-4. Epub 2013 Mar 18.

Department of Biomedical Informatics, Columbia University, New York, NY.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814479PMC
December 2013

Defining and measuring completeness of electronic health records for secondary use.

J Biomed Inform 2013 Oct 29;46(5):830-6. Epub 2013 Jun 29.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jbi.2013.06.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3810243PMC
October 2013

Opportunities for genomic clinical decision support interventions.

Genet Med 2013 Oct 19;15(10):817-23. Epub 2013 Sep 19.

1] Department of Biomedical Informatics, Columbia University, New York, New York, USA [2] Program for Personalized & Genomic Medicine and Center for Health-Related Informatics and Bioimaging, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1038/gim.2013.128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3858176PMC
October 2013

A centralized research data repository enhances retrospective outcomes research capacity: a case report.

J Am Med Inform Assoc 2013 May 15;20(3):563-7. Epub 2013 Jan 15.

Department of Urology, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1136/amiajnl-2012-001302DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3628063PMC
May 2013