Publications by authors named "Christopher R Bolen"

29Publications

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).

PLoS Comput Biol 2019 04 2;15(4):e1006899. Epub 2019 Apr 2.

Department of Pathology, Yale School of Medicine, New Haven, Connecticut, United States of America.

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http://dx.plos.org/10.1371/journal.pcbi.1006899
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http://dx.doi.org/10.1371/journal.pcbi.1006899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461294PMC
April 2019

The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires.

BMC Bioinformatics 2017 Mar 7;18(1):155. Epub 2017 Mar 7.

Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, 94305, CA, USA.

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http://dx.doi.org/10.1186/s12859-017-1556-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5340033PMC
March 2017

Quantitative gene set analysis generalized for repeated measures, confounder adjustment, and continuous covariates.

BMC Bioinformatics 2015 Aug 28;16:272. Epub 2015 Aug 28.

Baylor Research Institute, 3310 Live Oak, Dallas, 75204, TX, USA.

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http://dx.doi.org/10.1186/s12859-015-0707-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551517PMC
August 2015

Dynamic expression profiling of type I and type III interferon-stimulated hepatocytes reveals a stable hierarchy of gene expression.

Hepatology 2014 Apr 18;59(4):1262-72. Epub 2014 Feb 18.

Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT.

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http://dx.doi.org/10.1002/hep.26657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3938553PMC
April 2014

Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.

Nucleic Acids Res 2013 Oct 5;41(18):e170. Epub 2013 Aug 5.

Department of Pathology, Yale University School of Medicine, New Haven, CT 06511, USA, Bioengineering program, Faculty of engineering, Bar Ilan University, 5290002, Ramat Gan, Israel and Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1093/nar/gkt660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3794608PMC
October 2013

The blood transcriptional signature of chronic hepatitis C virus is consistent with an ongoing interferon-mediated antiviral response.

J Interferon Cytokine Res 2013 Jan 15;33(1):15-23. Epub 2012 Oct 15.

Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06511, USA.

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http://dx.doi.org/10.1089/jir.2012.0037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3539252PMC
January 2013

Cell subset prediction for blood genomic studies.

BMC Bioinformatics 2011 Jun 24;12:258. Epub 2011 Jun 24.

Interdepartmental Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06511, USA.

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http://dx.doi.org/10.1186/1471-2105-12-258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3213685PMC
June 2011