Christopher A Maher

Christopher A Maher

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Christopher A Maher

Christopher A Maher

Publications by authors named "Christopher A Maher"

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Novel RB1-Loss Transcriptomic Signature Is Associated with Poor Clinical Outcomes across Cancer Types.

Clin Cancer Res 2019 Jul 22;25(14):4290-4299. Epub 2019 Apr 22.

Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco, San Francisco, California.

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http://dx.doi.org/10.1158/1078-0432.CCR-19-0404DOI Listing
July 2019

Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.

Cell 2018 07 19;174(3):758-769.e9. Epub 2018 Jul 19.

Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco (UCSF), San Francisco, CA, USA; Division of Hematology and Oncology, Department of Medicine, UCSF, San Francisco, CA, USA; Department of Radiation Oncology, UCSF, San Francisco, CA, USA; Department of Urology, UCSF, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2018.06.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6425931PMC
July 2018

INTEGRATE-Vis: a tool for comprehensive gene fusion visualization.

Sci Rep 2017 12 19;7(1):17808. Epub 2017 Dec 19.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri, 63110, USA.

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http://dx.doi.org/10.1038/s41598-017-18257-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5736641PMC
December 2017

Comprehensive discovery of noncoding RNAs in acute myeloid leukemia cell transcriptomes.

Exp Hematol 2017 11 28;55:19-33. Epub 2017 Jul 28.

The McDonnell Genome Institute, Washington University, St. Louis, MO; Department of Medicine, Washington University, St. Louis, MO; Siteman Cancer Center, Washington University, St. Louis, MO; Department of Biomedical Engineering, Washington University, St. Louis, MO. Electronic address:

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http://dx.doi.org/10.1016/j.exphem.2017.07.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772960PMC
November 2017

Multi-institutional Analysis Shows that Low PCAT-14 Expression Associates with Poor Outcomes in Prostate Cancer.

Eur Urol 2017 02 22;71(2):257-266. Epub 2016 Jul 22.

Department of Internal Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, MO, USA; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA; Beaumont Hospital-Dearborn, Transitional Year Program, Dearborn, MI, USA; Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, MO, USA. Electronic address:

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http://dx.doi.org/10.1016/j.eururo.2016.07.012DOI Listing
February 2017

Visualizing tumor evolution with the fishplot package for R.

BMC Genomics 2016 11 7;17(1):880. Epub 2016 Nov 7.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, 63108, USA.

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http://dx.doi.org/10.1186/s12864-016-3195-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5100182PMC
November 2016

INTEGRATE: gene fusion discovery using whole genome and transcriptome data.

Genome Res 2016 Jan 10;26(1):108-18. Epub 2015 Nov 10.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Department of Internal Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri 63110, USA; Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, Missouri 63110, USA.

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http://dx.doi.org/10.1101/gr.186114.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691743PMC
January 2016

Clonotyping for precision oncology.

Drug Discov Today 2015 Dec 19;20(12):1464-9. Epub 2015 Oct 19.

McDonnell Genome Institute, Washington University School of Medicine, St Louis, MO 63110, USA; Department of Internal Medicine, Division of Oncology, Washington University School of Medicine, St Louis, MO 63110, USA; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St Louis, MO 63110, USA; Department of Biomedical Engineering, Washington University School of Medicine, St Louis, MO 63110, USA. Electronic address:

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http://dx.doi.org/10.1016/j.drudis.2015.10.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4975004PMC
December 2015

Optimizing cancer genome sequencing and analysis.

Cell Syst 2015 Sep;1(3):210-223

The McDonnell Genome Institute, Washington University, St. Louis, MO, USA, 63108 ; Department of Genetics, Washington University, St. Louis, MO, USA, 63108 ; Siteman Cancer Center, Washington University, St. Louis, MO, USA, 63108 ; Department of Medicine, Washington University, St. Louis, MO, USA, 63108.

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http://dx.doi.org/10.1016/j.cels.2015.08.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669575PMC
September 2015

Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol 2015 Jul 9;11(7):e1004274. Epub 2015 Jul 9.

The Genome Institute, Washington University in St. Louis, St. Louis, Missouri, United States of America; Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Medicine, Washington University School of Medicine, St. Louis, Missouri, United States of America; Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1004274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497734PMC
July 2015

Loss of Trop2 causes ErbB3 activation through a neuregulin-1-dependent mechanism in the mesenchymal subtype of HNSCC.

Oncotarget 2014 Oct;5(19):9281-94

Division of Oncology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri. The Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253434PMC
http://dx.doi.org/10.18632/oncotarget.2423DOI Listing
October 2014

SigFuge: single gene clustering of RNA-seq reveals differential isoform usage among cancer samples.

Nucleic Acids Res 2014 Aug 16;42(14):e113. Epub 2014 Jul 16.

Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA Multidisciplinary Thoracic Oncology Program, Division of Medical Oncology, Department of Internal Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA

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http://dx.doi.org/10.1093/nar/gku521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132703PMC
August 2014

cDNA hybrid capture improves transcriptome analysis on low-input and archived samples.

J Mol Diagn 2014 Jul 9;16(4):440-51. Epub 2014 May 9.

The Genome Institute, Washington University School of Medicine, St. Louis, Missouri; Division of Oncology, Department of Internal Medicine, Washington University School of Medicine, St. Louis, Missouri; Alvin J. Siteman Cancer Center, Washington University School of Medicine, St. Louis, Missouri; Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, Missouri. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2014.03.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4078367PMC
July 2014

Recurrent rearrangements in prostate cancer: causes and therapeutic potential.

Curr Drug Targets 2013 Apr;14(4):450-9

Division of Oncology, Department of Medicine, Washington University School of Medicine, St Louis, MO 63110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733264PMC
http://dx.doi.org/10.2174/1389450111314040006DOI Listing
April 2013

Chromothripsis and human disease: piecing together the shattering process.

Cell 2012 Jan;148(1-2):29-32

The Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.

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http://dx.doi.org/10.1016/j.cell.2012.01.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3658123PMC
January 2012

ChimeraScan: a tool for identifying chimeric transcription in sequencing data.

Bioinformatics 2011 Oct 11;27(20):2903-4. Epub 2011 Aug 11.

Michigan Center for Translational Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187648PMC
October 2011

A p53/miRNA-34 axis regulates Snail1-dependent cancer cell epithelial-mesenchymal transition.

J Cell Biol 2011 Oct 24;195(3):417-33. Epub 2011 Oct 24.

Department of Oral Pathology, Oral Cancer Research Institute, College of Dentistry, Yonsei University, Seoul 120-752, South Korea.

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http://dx.doi.org/10.1083/jcb.201103097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3206336PMC
October 2011

Common gene rearrangements in prostate cancer.

J Clin Oncol 2011 Sep 22;29(27):3659-68. Epub 2011 Aug 22.

Weill Cornell Medical College, 1300 York Ave, Room C 410-A, New York, NY 10021, USA.

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http://ascopubs.org/doi/10.1200/JCO.2011.35.1916
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http://dx.doi.org/10.1200/JCO.2011.35.1916DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4874145PMC
September 2011

HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data.

BMC Bioinformatics 2010 Jul 2;11:369. Epub 2010 Jul 2.

Center for Statistical Genetics, Department of Biostatistics, University of Michigan, Ann Arbor, 48109-2029, USA.

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http://dx.doi.org/10.1186/1471-2105-11-369DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2912305PMC
July 2010

A genome-wide characterization of microRNA genes in maize.

PLoS Genet 2009 Nov 20;5(11):e1000716. Epub 2009 Nov 20.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000716DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2773440PMC
November 2009

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

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http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

Genome-wide analysis of cancer/testis gene expression.

Proc Natl Acad Sci U S A 2008 Dec 16;105(51):20422-7. Epub 2008 Dec 16.

Department of Biostatistics, Harvard School of Public Health, 655 Huntington Avenue, SPH2, 4th Floor, Boston, MA 02115, USA.

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http://dx.doi.org/10.1073/pnas.0810777105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2603434PMC
December 2008

High field 207Pb spin-lattice relaxation in solid lead nitrate and lead molybdate.

J Chem Phys 2008 Feb;128(5):052310

Department of Physics and Department of Applied Science, College of William and Mary, Williamsburg, Virginia 23187-8795, USA.

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http://dx.doi.org/10.1063/1.2829985DOI Listing
February 2008