Publications by authors named "Christine A Wells"

72Publications

Pharmacological validation of targets regulating CD14 during macrophage differentiation.

EBioMedicine 2020 Nov 7;61:103039. Epub 2020 Oct 7.

Immunology Catalyst, Immunology Network, Adaptive Immunity Research Unit, GSK, Stevenage, UK; Inflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia; Department of Medical Biology, The University of Melbourne, Parkville, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2020.103039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7648121PMC
November 2020

A simple, scalable approach to building a cross-platform transcriptome atlas.

PLoS Comput Biol 2020 09 28;16(9):e1008219. Epub 2020 Sep 28.

Centre for Stem Cell Systems, The University of Melbourne, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1371/journal.pcbi.1008219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7544119PMC
September 2020

Transcriptional Profiling of Stem Cells: Moving from Descriptive to Predictive Paradigms.

Stem Cell Reports 2019 08;13(2):237-246

Centre for Stem Cell Systems, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Parkville 3010, Australia.

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http://dx.doi.org/10.1016/j.stemcr.2019.07.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700522PMC
August 2019

Designer macrophages: Pitfalls and opportunities for modelling macrophage phenotypes from pluripotent stem cells.

Differentiation 2018 Nov - Dec;104:42-49. Epub 2018 Oct 16.

The Centre for Stem Cell Systems, MDHS, University of Melbourne, Parkville, Victoria 3010, Australia; The Walter and Eliza Hall Institute for Medical Research, Parkville, Victoria 3010, Australia. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S03014681183008
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http://dx.doi.org/10.1016/j.diff.2018.10.001DOI Listing
June 2019

Stemformatics: visualize and download curated stem cell data.

Nucleic Acids Res 2019 01;47(D1):D841-D846

Centre for Stem Cell Systems, Anatomy and Neuroscience, The University of Melbourne, Melbourne, Victoria 3010, Australia.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323943PMC
January 2019

Dynamic Interplay of Innate and Adaptive Immunity During Sterile Retinal Inflammation: Insights From the Transcriptome.

Front Immunol 2018 18;9:1666. Epub 2018 Jul 18.

The Centre for Stem Cell Systems, Department of Anatomy and Neuroscience, The University of Melbourne, Melbourne, VIC, Australia.

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http://dx.doi.org/10.3389/fimmu.2018.01666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6058037PMC
July 2018

Toll-Like Receptors Drive Specific Patterns of Tolerance and Training on Restimulation of Macrophages.

Front Immunol 2018 14;9:933. Epub 2018 May 14.

Centre for Immunobiology, Institute of Infection, Immunity & Inflammation, College of Medicine, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.

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http://dx.doi.org/10.3389/fimmu.2018.00933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5960718PMC
July 2019

The Impact of APP on Alzheimer-like Pathogenesis and Gene Expression in Down Syndrome iPSC-Derived Neurons.

Stem Cell Reports 2018 07 31;11(1):32-42. Epub 2018 May 31.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, QLD 4072, Australia. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22136711183022
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http://dx.doi.org/10.1016/j.stemcr.2018.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6066957PMC
July 2018

Human CD141 Dendritic Cell and CD1c Dendritic Cell Undergo Concordant Early Genetic Programming after Activation in Humanized Mice .

Front Immunol 2017 30;8:1419. Epub 2017 Oct 30.

Cancer Immunotherapies Laboratory, Mater Research Institute, University of Queensland, Translational Research Institute, Brisbane, QLD, Australia.

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http://dx.doi.org/10.3389/fimmu.2017.01419DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5670352PMC
October 2017

Human iPSC-Derived Cerebellar Neurons from a Patient with Ataxia-Telangiectasia Reveal Disrupted Gene Regulatory Networks.

Front Cell Neurosci 2017 13;11:321. Epub 2017 Oct 13.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St. Lucia, QLD, Australia.

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http://dx.doi.org/10.3389/fncel.2017.00321DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5645492PMC
October 2017

FANTOM5 CAGE profiles of human and mouse samples.

Authors:
Shuhei Noguchi Takahiro Arakawa Shiro Fukuda Masaaki Furuno Akira Hasegawa Fumi Hori Sachi Ishikawa-Kato Kaoru Kaida Ai Kaiho Mutsumi Kanamori-Katayama Tsugumi Kawashima Miki Kojima Atsutaka Kubosaki Ri-Ichiroh Manabe Mitsuyoshi Murata Sayaka Nagao-Sato Kenichi Nakazato Noriko Ninomiya Hiromi Nishiyori-Sueki Shohei Noma Eri Saijyo Akiko Saka Mizuho Sakai Christophe Simon Naoko Suzuki Michihira Tagami Shoko Watanabe Shigehiro Yoshida Peter Arner Richard A Axton Magda Babina J Kenneth Baillie Timothy C Barnett Anthony G Beckhouse Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher Ailsa J Carlisle Hans C Clevers Carrie A Davis Michael Detmar Taeko Dohi Albert S B Edge Matthias Edinger Anna Ehrlund Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Afsaneh Eslami Michela Fagiolini Lynsey Fairbairn Mary C Farach-Carson Geoffrey J Faulkner Carmelo Ferrai Malcolm E Fisher Lesley M Forrester Rie Fujita Jun-Ichi Furusawa Teunis B Geijtenbeek Thomas Gingeras Daniel Goldowitz Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Yuki Hasegawa Meenhard Herlyn Peter Heutink Kelly J Hitchens David A Hume Tomokatsu Ikawa Yuri Ishizu Chieko Kai Hiroshi Kawamoto Yuki I Kawamura Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura Sarah Klein S Peter Klinken Alan J Knox Soichi Kojima Haruhiko Koseki Shigeo Koyasu Weonju Lee Andreas Lennartsson Alan Mackay-Sim Niklas Mejhert Yosuke Mizuno Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Kelly J Morris Hozumi Motohashi Christine L Mummery Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Tadasuke Nozaki Soichi Ogishima Naganari Ohkura Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Robert Passier Margaret Patrikakis Ana Pombo Swati Pradhan-Bhatt Xian-Yang Qin Michael Rehli Patrizia Rizzu Sugata Roy Antti Sajantila Shimon Sakaguchi Hiroki Sato Hironori Satoh Suzana Savvi Alka Saxena Christian Schmidl Claudio Schneider Gundula G Schulze-Tanzil Anita Schwegmann Guojun Sheng Jay W Shin Daisuke Sugiyama Takaaki Sugiyama Kim M Summers Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Andru Tomoiu Hiroo Toyoda Marc van de Wetering Linda M van den Berg Roberto Verardo Dipti Vijayan Christine A Wells Louise N Winteringham Ernst Wolvetang Yoko Yamaguchi Masayuki Yamamoto Chiyo Yanagi-Mizuochi Misako Yoneda Yohei Yonekura Peter G Zhang Silvia Zucchelli Imad Abugessaisa Erik Arner Jayson Harshbarger Atsushi Kondo Timo Lassmann Marina Lizio Serkan Sahin Thierry Sengstag Jessica Severin Hisashi Shimoji Masanori Suzuki Harukazu Suzuki Jun Kawai Naoto Kondo Masayoshi Itoh Carsten O Daub Takeya Kasukawa Hideya Kawaji Piero Carninci Alistair R R Forrest Yoshihide Hayashizaki

Sci Data 2017 08 29;4:170112. Epub 2017 Aug 29.

RIKEN Omics Science Center, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1038/sdata.2017.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5574368PMC
August 2017

a new method for pathway-based interpretation of gene expression variability.

PeerJ 2017 23;5:e3334. Epub 2017 May 23.

Department of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, NY, United States of America.

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http://dx.doi.org/10.7717/peerj.3334DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5444375PMC
May 2017

Mural lymphatic endothelial cells regulate meningeal angiogenesis in the zebrafish.

Nat Neurosci 2017 Jun 1;20(6):774-783. Epub 2017 May 1.

Division of Genomics of Development and Disease, Institute for Molecular Bioscience, The University of Queensland, St Lucia, Brisbane, Australia.

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http://dx.doi.org/10.1038/nn.4558DOI Listing
June 2017

A molecular classification of human mesenchymal stromal cells.

PeerJ 2016 24;4:e1845. Epub 2016 Mar 24.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, Queensland, Australia; Department of Anatomy and Neuroscience, Faculty of Medicine, University of Melbourne, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.7717/peerj.1845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4811172PMC
April 2016

Mincle Activation and the Syk/Card9 Signaling Axis Are Central to the Development of Autoimmune Disease of the Eye.

J Immunol 2016 Apr 26;196(7):3148-58. Epub 2016 Feb 26.

VA Portland Health Care System, Portland, OR 97239; Department of Molecular Microbiology and Immunology, Oregon Health & Science University, Portland, OR 97239;

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http://dx.doi.org/10.4049/jimmunol.1502355DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4799727PMC
April 2016

Human mesenchymal stem cells alter the gene profile of monocytes from patients with Type 2 diabetes and end-stage renal disease.

Regen Med 2016 Mar 6;11(2):145-58. Epub 2015 Nov 6.

Department of Anatomy & Developmental Biology, Monash University, Clayton, Victoria, 3800, Australia.

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http://dx.doi.org/10.2217/rme.15.74DOI Listing
March 2016

Transcriptional ontogeny of first trimester human fetal and placental mesenchymal stem cells: Gestational age versus niche.

Genom Data 2014 Dec 25;2:382-5. Epub 2014 Oct 25.

The University of Queensland, UQ Centre for Clinical Research, Herston Campus, Herston QLD 4029, Australia ; Centre for Advanced Prenatal Care, Royal Brisbane & Women's Hospital, Herston QLD 4029, Australia.

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http://dx.doi.org/10.1016/j.gdata.2014.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4535935PMC
December 2014

Genome-wide characterization of the routes to pluripotency.

Nature 2014 Dec;516(7530):198-206

1] Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada [2] Institute of Medical Science, University of Toronto, Toronto, Ontario M5T 3H7, Canada [3] Department of Obstetrics and Gynaecology, University of Toronto, Toronto, Ontario M5S 1E2, Canada.

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http://stemcell.ibme.utoronto.ca/pdf/2014/Hussein-2014-Route
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http://www.nature.com/doifinder/10.1038/nature14046
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http://dx.doi.org/10.1038/nature14046DOI Listing
December 2014

Divergent reprogramming routes lead to alternative stem-cell states.

Nature 2014 Dec;516(7530):192-7

1] Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada [2] Institute of Medical Science, University of Toronto, Toronto, Ontario M5T 3H7, Canada [3] Department of Obstetrics and Gynaecology, University of Toronto, Toronto, Ontario M5T 3H7, Canada.

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http://dx.doi.org/10.1038/nature14047DOI Listing
December 2014

Small RNA changes en route to distinct cellular states of induced pluripotency.

Nat Commun 2014 Dec 10;5:5522. Epub 2014 Dec 10.

1] Genome Biology Department, The John Curtin School of Medical Research, The Australian National University, Canberra, Australian Capital Territory 2601, Australia [2] Molecular, Structural &Computational Biology Division, Victor Chang Cardiac Research Institute, Sydney, New South Wales 2010, Australia.

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http://dx.doi.org/10.1038/ncomms6522DOI Listing
December 2014

An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator.

Nat Commun 2014 Dec 10;5:5619. Epub 2014 Dec 10.

1] Genomic Medicine Institute (GMI), Medical Research Center, Seoul National University, Seoul 110-799, Korea [2] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Korea [3] Department of Biochemistry, Seoul National University College of Medicine, Seoul 110-799, Korea [4] Life Science Institute, Macrogen Inc., Seoul 153-781, Korea.

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http://dx.doi.org/10.1038/ncomms6619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4284806PMC
December 2014

Gene expression variability as a unifying element of the pluripotency network.

Stem Cell Reports 2014 Aug 25;3(2):365-77. Epub 2014 Jul 25.

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St. Lucia, Brisbane QSLD 4072, Australia; Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK. Electronic address:

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http://dx.doi.org/10.1016/j.stemcr.2014.06.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4175554PMC
August 2014

High incidence of contaminating maternal cell overgrowth in human placental mesenchymal stem/stromal cell cultures: a systematic review.

Stem Cells Transl Med 2014 Nov 25;3(11):1305-11. Epub 2014 Aug 25.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, Queensland, Australia; University of Queensland Centre for Clinical Research, University of Queensland, Institute of Health and Biomedical Innovation, Queensland University of Technology at the Translational Research Institute, and Centre for Advanced Prenatal Care, Royal Brisbane & Women's Hospital, Brisbane, Queensland, Australia; Institute of Infection, Immunity and Inflammation, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, United Kingdom.

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http://dx.doi.org/10.5966/sctm.2014-0051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214840PMC
November 2014

Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells.

Stem Cell Reports 2014 Jun 22;2(6):881-95. Epub 2014 May 22.

Eli and Edythe Broad Center for Regenerative Medicine and Stem Cell Research, Keck School of Medicine, University of Southern California, Los Angeles, CA 90089, USA ; University of Melbourne, Walter and Eliza Hall Institute of Medical Research, Florey Institute of Neuroscience and Mental Health, Melbourne, 3010 VIC, Australia.

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http://www.cell.com/stem-cell-reports/pdf/S2213-6711(14)0012
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http://linkinghub.elsevier.com/retrieve/pii/S221367111400121
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http://dx.doi.org/10.1016/j.stemcr.2014.04.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4050352PMC
June 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

YuGene: a simple approach to scale gene expression data derived from different platforms for integrated analyses.

Genomics 2014 Apr 22;103(4):239-51. Epub 2014 Mar 22.

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, St. Lucia 4072, Australia; The Institute for Infection, Immunity & Inflammation, College of Medical, Veterinary and Life Sciences, Glasgow University, G12 8TA, UK. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2014.03.001DOI Listing
April 2014

Identification of unsafe human induced pluripotent stem cell lines using a robust surrogate assay for pluripotency.

Stem Cells 2013 Aug;31(8):1498-510

CSIRO, Materials Science and Engineering, Clayton, Victoria, Australia; Department of Anatomy and Developmental Biology, Monash University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/stem.1425DOI Listing
August 2013

Stemformatics: visualisation and sharing of stem cell gene expression.

Stem Cell Res 2013 May 20;10(3):387-95. Epub 2012 Dec 20.

The Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, 4072 Australia.

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http://dx.doi.org/10.1016/j.scr.2012.12.003DOI Listing
May 2013

Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease.

Stem Cells Transl Med 2013 Mar 14;2(3):175-84. Epub 2013 Feb 14.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.5966/sctm.2012-0117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659762PMC
March 2013

Induced pluripotent stem cells from ataxia-telangiectasia recapitulate the cellular phenotype.

Stem Cells Transl Med 2012 Jul 28;1(7):523-35. Epub 2012 Jun 28.

Australian Institute for Bioengineering and Nanotechnology, University of Queensland, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.5966/sctm.2012-0024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3659724PMC
July 2012

Mincle polarizes human monocyte and neutrophil responses to Candida albicans.

Immunol Cell Biol 2012 Oct 29;90(9):889-95. Epub 2012 May 29.

Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Queensland, Australia.

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http://dx.doi.org/10.1038/icb.2012.24DOI Listing
October 2012

attract: A method for identifying core pathways that define cellular phenotypes.

PLoS One 2011 14;6(10):e25445. Epub 2011 Oct 14.

Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025445PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194807PMC
February 2012

Defining an informativeness metric for clustering gene expression data.

Bioinformatics 2011 Apr 16;27(8):1094-100. Epub 2011 Feb 16.

Department of Biostatistics, Harvard School of Public Health, Boston, MA 02115, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btr074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072547PMC
April 2011

IL-12 and related cytokines: function and regulatory implications in Candida albicans infection.

Clin Dev Immunol 2011 1;2011:686597. Epub 2010 Nov 1.

The School of Dentistry, University of Queensland School of Dentistry, 200 Turbot Street, Brisbane, QLD 4000, Australia.

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http://www.hindawi.com/journals/jir/2011/686597/
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http://dx.doi.org/10.1155/2011/686597DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2968417PMC
May 2011

Identifying co-regulating microRNA groups.

J Bioinform Comput Biol 2010 Feb;8(1):99-115

The National Centre for Adult Stem Cell Research, The Eskitis Institute for Cell and Molecular Therapies, Griffith University, Nathan, QLD 4111, Australia.

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http://dx.doi.org/10.1142/s0219720010004574DOI Listing
February 2010

Diversification of TOLLIP isoforms in mouse and man.

Mamm Genome 2009 May 15;20(5):305-14. Epub 2009 May 15.

The National Centre for Adult Stem Cell Research, The Eskitis Institute for Cell and Molecular Therapies, Griffith University, QLD, Australia.

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http://dx.doi.org/10.1007/s00335-009-9188-3DOI Listing
May 2009

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Authors:
Harukazu Suzuki Alistair R R Forrest Erik van Nimwegen Carsten O Daub Piotr J Balwierz Katharine M Irvine Timo Lassmann Timothy Ravasi Yuki Hasegawa Michiel J L de Hoon Shintaro Katayama Kate Schroder Piero Carninci Yasuhiro Tomaru Mutsumi Kanamori-Katayama Atsutaka Kubosaki Altuna Akalin Yoshinari Ando Erik Arner Maki Asada Hiroshi Asahara Timothy Bailey Vladimir B Bajic Denis Bauer Anthony G Beckhouse Nicolas Bertin Johan Björkegren Frank Brombacher Erika Bulger Alistair M Chalk Joe Chiba Nicole Cloonan Adam Dawe Josee Dostie Pär G Engström Magbubah Essack Geoffrey J Faulkner J Lynn Fink David Fredman Ko Fujimori Masaaki Furuno Takashi Gojobori Julian Gough Sean M Grimmond Mika Gustafsson Megumi Hashimoto Takehiro Hashimoto Mariko Hatakeyama Susanne Heinzel Winston Hide Oliver Hofmann Michael Hörnquist Lukasz Huminiecki Kazuho Ikeo Naoko Imamoto Satoshi Inoue Yusuke Inoue Ryoko Ishihara Takao Iwayanagi Anders Jacobsen Mandeep Kaur Hideya Kawaji Markus C Kerr Ryuichiro Kimura Syuhei Kimura Yasumasa Kimura Hiroaki Kitano Hisashi Koga Toshio Kojima Shinji Kondo Takeshi Konno Anders Krogh Adele Kruger Ajit Kumar Boris Lenhard Andreas Lennartsson Morten Lindow Marina Lizio Cameron Macpherson Norihiro Maeda Christopher A Maher Monique Maqungo Jessica Mar Nicholas A Matigian Hideo Matsuda John S Mattick Stuart Meier Sei Miyamoto Etsuko Miyamoto-Sato Kazuhiko Nakabayashi Yutaka Nakachi Mika Nakano Sanne Nygaard Toshitsugu Okayama Yasushi Okazaki Haruka Okuda-Yabukami Valerio Orlando Jun Otomo Mikhail Pachkov Nikolai Petrovsky Charles Plessy John Quackenbush Aleksandar Radovanovic Michael Rehli Rintaro Saito Albin Sandelin Sebastian Schmeier Christian Schönbach Ariel S Schwartz Colin A Semple Miho Sera Jessica Severin Katsuhiko Shirahige Cas Simons George St Laurent Masanori Suzuki Takahiro Suzuki Matthew J Sweet Ryan J Taft Shizu Takeda Yoichi Takenaka Kai Tan Martin S Taylor Rohan D Teasdale Jesper Tegnér Sarah Teichmann Eivind Valen Claes Wahlestedt Kazunori Waki Andrew Waterhouse Christine A Wells Ole Winther Linda Wu Kazumi Yamaguchi Hiroshi Yanagawa Jun Yasuda Mihaela Zavolan David A Hume Takahiro Arakawa Shiro Fukuda Kengo Imamura Chikatoshi Kai Ai Kaiho Tsugumi Kawashima Chika Kawazu Yayoi Kitazume Miki Kojima Hisashi Miura Kayoko Murakami Mitsuyoshi Murata Noriko Ninomiya Hiromi Nishiyori Shohei Noma Chihiro Ogawa Takuma Sano Christophe Simon Michihira Tagami Yukari Takahashi Jun Kawai Yoshihide Hayashizaki

Nat Genet 2009 May 19;41(5):553-62. Epub 2009 Apr 19.

RIKEN Omics Science Center, RIKEN Yokohama Institute, Kanagawa, Japan.

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http://dx.doi.org/10.1038/ng.375DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6711855PMC
May 2009

A cross-study transcriptional analysis of Parkinson's disease.

PLoS One 2009 23;4(3):e4955. Epub 2009 Mar 23.

National Centre for Adult Stem Cell Research, Eskitis Institute for Cell and Molecular Therapies, Griffith University, Brisbane, Queensland, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0004955PLOS
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http://dx.doi.org/10.1186/1752-0509-2-88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2596796PMC
October 2008

Human and mouse macrophage-inducible C-type lectin (Mincle) bind Candida albicans.

Glycobiology 2008 Sep 28;18(9):679-85. Epub 2008 May 28.

Institute for Glycomics, Griffith University, Gold Coast Campus, QLD 4222, Australia.

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http://dx.doi.org/10.1093/glycob/cwn046DOI Listing
September 2008

Systems biology of transcription control in macrophages.

Bioessays 2007 Dec;29(12):1215-26

Scripps NeuroAIDS Preclinical Studies Centre and Department of Bioengineering, Jacobs School of Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.

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http://dx.doi.org/10.1002/bies.20683DOI Listing
December 2007

Transcriptional regulatory networks in macrophages.

Novartis Found Symp 2007 ;281:2-18; discussion 18-24, 50-3, 208-9

ARC Special Research Centre for Functional and Applied Genomics and CRC for Chronic Inflammatory Diseases, Institute for Molecular Bioscience, University of Queensland, Australia.

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http://dx.doi.org/10.1002/9780470062128.ch2DOI Listing
December 2007

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action.

Immunobiology 2005 ;210(2-4):97-107

Cooperative Research Centre for Chronic Inflammatory Diseases, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1016/j.imbio.2005.05.004DOI Listing
October 2005

Inflammation suppressor genes: please switch out all the lights.

J Leukoc Biol 2005 Jul 17;78(1):9-13. Epub 2005 Mar 17.

Griffith University, Queensland, Australia.

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http://dx.doi.org/10.1189/jlb.1204710DOI Listing
July 2005

Genetic control of the innate immune response.

BMC Immunol 2003 Jun 26;4. Epub 2003 Jun 26.

Institute for Molecular Biosciences, The University of Queensland, Brisbane, QLD, 4072, Australia.

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http://dx.doi.org/10.1186/1471-2172-4-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC194878PMC
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Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage.

Genome Res 2003 Jun;13(6B):1360-5

Institute for Molecular Bioscience and ARC Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1101/gr.1056103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC403663PMC
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The mononuclear phagocyte system revisited.

J Leukoc Biol 2002 Oct;72(4):621-7

Institute for Molecular Bioscience, University of Queensland, Australia.

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October 2002