Publications by authors named "Christina A Cuomo"

100Publications

Experimental evolution identifies adaptive aneuploidy as a mechanism of fluconazole resistance in .

Antimicrob Agents Chemother 2020 Oct 19. Epub 2020 Oct 19.

Department of infectious diseases, Huashan Hospital, Fudan University and State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China

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http://dx.doi.org/10.1128/AAC.01466-20DOI Listing
October 2020

Tracking a Global Threat: a New Genotyping Method for Candida auris.

mBio 2020 03 10;11(2). Epub 2020 Mar 10.

Institut Pasteur, Molecular Mycology Unit, CNRS UMR2000, National Reference Center for Invasive Mycoses and Antifungals (NRCMA), Paris, France.

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http://dx.doi.org/10.1128/mBio.00259-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7064761PMC
March 2020

Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase.

Cell 2020 01 16;180(2):263-277.e20. Epub 2020 Jan 16.

Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94158, USA; Chan-Zuckerberg Biohub, San Francisco, CA 94158, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2019.12.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7197499PMC
January 2020

Complete Genome Sequences for Two Clinical Isolates from Northern and Southern Vietnam.

Microbiol Resour Announc 2020 Jan 9;9(2). Epub 2020 Jan 9.

Division of Infectious Diseases, Duke University School of Medicine, Durham, North Carolina, USA.

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http://dx.doi.org/10.1128/MRA.01367-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6952663PMC
January 2020

Recovered From Olive Trees () in Turkey Reveal Allopatry With African and South American Lineages.

Front Cell Infect Microbiol 2019 8;9:384. Epub 2019 Nov 8.

Division of Mycology, Department of Microbiology, Faculty of Medicine, University of Çukurova, Adana, Turkey.

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http://dx.doi.org/10.3389/fcimb.2019.00384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856141PMC
August 2020

A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands.

mBio 2019 11 12;10(6). Epub 2019 Nov 12.

Molecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA

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http://dx.doi.org/10.1128/mBio.02306-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6851281PMC
November 2019

Future-Proofing Your Genome Assembly for Reproducibility and Clarity.

Microbiol Resour Announc 2019 Sep 5;8(36). Epub 2019 Sep 5.

Department of Microbiology and Plant Pathology and Institute for Integrative Genome Biology, University of California-Riverside, Riverside, California, USA.

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http://dx.doi.org/10.1128/MRA.00954-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728651PMC
September 2019

Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study.

J Clin Microbiol 2019 11 23;57(11). Epub 2019 Oct 23.

Division of Microbiology, Department of Laboratory Medicine, Centre Hospitalier de l'Université de Montréal (CHUM), Montreal, Quebec, Canada

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http://dx.doi.org/10.1128/JCM.00884-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6812989PMC
November 2019

Genome Sequence for Candida albicans Clinical Oral Isolate 529L.

Microbiol Resour Announc 2019 Jun 20;8(25). Epub 2019 Jun 20.

Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.

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http://dx.doi.org/10.1128/MRA.00554-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6588375PMC
June 2019

Genome Sequence of the Black Yeast Exophiala lecanii-corni.

Microbiol Resour Announc 2019 Mar 7;8(10). Epub 2019 Mar 7.

Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.

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http://dx.doi.org/10.1128/MRA.01709-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6406120PMC
March 2019

Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans.

PLoS Pathog 2019 01 14;15(1):e1007528. Epub 2019 Jan 14.

Division of Biological Sciences, University of California, San Diego, La Jolla, CA United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1007528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347328PMC
January 2019

Phenotypic Variability Correlates with Clinical Outcome in Isolates Obtained from Botswanan HIV/AIDS Patients.

mBio 2018 10 23;9(5). Epub 2018 Oct 23.

School of Life and Environmental Sciences and the Marie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, New South Wales, Australia

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http://mbio.asm.org/lookup/doi/10.1128/mBio.02016-18
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http://dx.doi.org/10.1128/mBio.02016-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6199498PMC
October 2018

Pathways of Pathogenicity: Transcriptional Stages of Germination in the Fatal Fungal Pathogen .

mSphere 2018 09 26;3(5). Epub 2018 Sep 26.

Institute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom

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http://dx.doi.org/10.1128/mSphere.00403-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6158513PMC
September 2018

Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen.

Proc Natl Acad Sci U S A 2018 09 27;115(37):E8688-E8697. Epub 2018 Aug 27.

Department of Molecular Microbiology and Immunology, Brown University, Providence, RI 02912;

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http://dx.doi.org/10.1073/pnas.1806002115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140516PMC
September 2018

Genomic characterization of recurrent mold infections in thoracic transplant recipients.

Transpl Infect Dis 2018 Oct 19;20(5):e12935. Epub 2018 Jun 19.

Division of Infectious Diseases, Department of Medicine, Duke University, Durham, NC, USA.

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http://dx.doi.org/10.1111/tid.12935DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175610PMC
October 2018

Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi.

Sci Rep 2018 03 14;8(1):4473. Epub 2018 Mar 14.

Broad Institute of MIT and Harvard, Cambridge, MA, United States.

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http://dx.doi.org/10.1038/s41598-018-22816-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5852033PMC
March 2018

Advances in Cryptococcus genomics: insights into the evolution of pathogenesis.

Mem Inst Oswaldo Cruz 2018 19;113(7):e170473. Epub 2018 Feb 19.

Broad Institute, Massachusetts, United States.

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http://dx.doi.org/10.1590/0074-02760170473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851040PMC
April 2018

RNAi is a critical determinant of centromere evolution in closely related fungi.

Proc Natl Acad Sci U S A 2018 03 5;115(12):3108-3113. Epub 2018 Mar 5.

Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore 560064, India;

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http://dx.doi.org/10.1073/pnas.1713725115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5866544PMC
March 2018

: An Intricate Dance of Anther Smut and Its Host.

G3 (Bethesda) 2018 02 2;8(2):505-518. Epub 2018 Feb 2.

Department of Biology, Program on Disease Evolution, University of Louisville, Kentucky 40292

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http://dx.doi.org/10.1534/g3.117.300318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5919739PMC
February 2018

Harnessing Whole Genome Sequencing in Medical Mycology.

Curr Fungal Infect Rep 2017 9;11(2):52-59. Epub 2017 Jun 9.

Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA USA.

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http://dx.doi.org/10.1007/s12281-017-0276-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570814PMC
June 2017

Whole Genome Sequence of the Heterozygous Clinical Isolate 81-B-5.

G3 (Bethesda) 2017 09 7;7(9):2883-2889. Epub 2017 Sep 7.

Department of Biology, Bowdoin College, Brunswick, Maine 04011

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http://dx.doi.org/10.1534/g3.117.043547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5592916PMC
September 2017

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to in Phenotype-Paired Isolates from Australia.

Front Plant Sci 2017 9;8:148. Epub 2017 Feb 9.

Faculty of Agriculture and Environment, Plant Breeding Institute, The University of Sydney Narellan, NSW, Australia.

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http://dx.doi.org/10.3389/fpls.2017.00148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5298990PMC
February 2017

Transcriptional analysis of mating and pre-infection stages of the anther smut, .

Microbiology (Reading) 2017 Mar;163(3):410-420

Department of Biology, Program on Disease Evolution, University of Louisville, Louisville, KY 40292, USA.

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http://www.microbiologyresearch.org/content/journal/micro/10
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http://dx.doi.org/10.1099/mic.0.000421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7008212PMC
March 2017

Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses.

Fungal Genet Biol 2017 03 16;100:22-32. Epub 2017 Jan 16.

Cellular and Molecular Biology Unit, Corporación para Investigaciones Biológicas, Medellín, Colombia; School of Microbiology, Universidad de Antioquia, Medellín, Colombia; MICROBA Research Group, School of Microbiology, Universidad de Antioquia, Medellín, Colombia. Electronic address:

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http://dx.doi.org/10.1016/j.fgb.2017.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5438156PMC
March 2017

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii.

Philos Trans R Soc Lond B Biol Sci 2016 12;371(1709)

Genome Sequencing and Analysis Program, The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.

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http://dx.doi.org/10.1098/rstb.2016.0021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5095545PMC
December 2016

A Multistate Toggle Switch Defines Fungal Cell Fates and Is Regulated by Synergistic Genetic Cues.

PLoS Genet 2016 Oct 6;12(10):e1006353. Epub 2016 Oct 6.

Department of Microbiology and Immunology, Brown University, Providence, Rhode Island, United States of America.

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http://dx.plos.org/10.1371/journal.pgen.1006353
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http://dx.doi.org/10.1371/journal.pgen.1006353DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5053522PMC
October 2016

Genome Sequence of Spizellomyces punctatus.

Genome Announc 2016 Aug 18;4(4). Epub 2016 Aug 18.

Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1128/genomeA.00849-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4991717PMC
August 2016

Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl.

Mol Ecol 2016 07 6;25(14):3370-83. Epub 2016 Jun 6.

Ecologie Systématique Evolution, CNRS, Univ. Paris-Sud, AgroParisTech, Université Paris-Saclay, 91400, Orsay, France.

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http://dx.doi.org/10.1111/mec.13675DOI Listing
July 2016

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae.

Genetics 2015 Aug 3;200(4):1275-84. Epub 2015 Jun 3.

Ecologie, Systématique et Evolution, Univ Paris-Sud, 91405 Orsay, France Centre National de la Recherche Scientifique, F-91405 Orsay, France

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http://dx.doi.org/10.1534/genetics.115.177709DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574255PMC
August 2015

Finding a Missing Gene: EFG1 Regulates Morphogenesis in Candida tropicalis.

G3 (Bethesda) 2015 Mar 9;5(5):849-56. Epub 2015 Mar 9.

Department of Microbiology and Immunology and Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California 94158.

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http://dx.doi.org/10.1534/g3.115.017566DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4426371PMC
March 2015

Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum.

Genome Announc 2015 Feb 26;3(1). Epub 2015 Feb 26.

Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.

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http://dx.doi.org/10.1128/genomeA.00021-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4342419PMC
February 2015

Genome update of the dimorphic human pathogenic fungi causing paracoccidioidomycosis.

PLoS Negl Trop Dis 2014 Dec 4;8(12):e3348. Epub 2014 Dec 4.

Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.

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http://dx.doi.org/10.1371/journal.pntd.0003348DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256289PMC
December 2014

Genome Sequence of the Microsporidian Species Nematocida sp1 Strain ERTm6 (ATCC PRA-372).

Genome Announc 2014 Sep 18;2(5). Epub 2014 Sep 18.

Division of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, California, USA

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http://dx.doi.org/10.1128/genomeA.00905-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4172269PMC
September 2014

Fungi on the skin: dermatophytes and Malassezia.

Cold Spring Harb Perspect Med 2014 Aug 1;4(8). Epub 2014 Aug 1.

Procter & Gamble Company, Mason, Ohio 45040.

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http://dx.doi.org/10.1101/cshperspect.a019802DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4109575PMC
August 2014

Ubiquitin-mediated response to microsporidia and virus infection in C. elegans.

PLoS Pathog 2014 Jun 19;10(6):e1004200. Epub 2014 Jun 19.

Division of Biological Sciences, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, California, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063957PMC
June 2014

Isolation of Blastomyces dermatitidis yeast from lung tissue during murine infection for in vivo transcriptional profiling.

Fungal Genet Biol 2013 Jul 14;56:1-8. Epub 2013 Mar 14.

Department of Medicine, School of Medicine and Public Health, University of Wisconsin - Madison, 1550 Linden Drive, Microbial Sciences Building, Room 4335A, Madison, WI 53706, USA.

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http://dx.doi.org/10.1016/j.fgb.2013.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3696400PMC
July 2013

Identification of the mating-type (MAT) locus that controls sexual reproduction of Blastomyces dermatitidis.

Eukaryot Cell 2013 Jan 9;12(1):109-17. Epub 2012 Nov 9.

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA.

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http://dx.doi.org/10.1128/EC.00249-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535845PMC
January 2013

Approaches to Fungal Genome Annotation.

Mycology 2011 Oct;2(3):118-141

Genome Sequencing and Analysis Program, Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, U.S.A.

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http://dx.doi.org/10.1080/21501203.2011.606851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3207268PMC
October 2011