Publications by authors named "Christian von Mering"

100Publications

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

Nucleic Acids Res 2020 Nov 25. Epub 2020 Nov 25.

Department of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland.

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http://dx.doi.org/10.1093/nar/gkaa1074DOI Listing
November 2020

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.

Nature 2020 02 5;578(7793):102-111. Epub 2020 Feb 5.

The Broad Institute of MIT and Harvard, Cambridge, MA, USA.

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http://dx.doi.org/10.1038/s41586-020-1965-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054214PMC
February 2020

Rapid Inference of Direct Interactions in Large-Scale Ecological Networks from Heterogeneous Microbial Sequencing Data.

Cell Syst 2019 09 18;9(3):286-296.e8. Epub 2019 Sep 18.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, CH-8057 Zürich, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2019.08.002DOI Listing
September 2019

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies.

BMC Bioinformatics 2019 May 6;20(1):228. Epub 2019 May 6.

Institute of Molecular Life Sciences, University of Zurich, Winterthurerstrasse 190, Zurich, 8057, Switzerland.

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http://dx.doi.org/10.1186/s12859-019-2828-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6501302PMC
May 2019

Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition.

Mol Cell 2019 06 29;74(5):951-965.e13. Epub 2019 Apr 29.

Institute of Stem Cell Research, Helmholtz Zentrum München, 85764 Neuherberg, Germany; Comprehensive Pneumology Center (CPC-M), Ludwig-Maximilians-Universität München, Asklepios Fachkliniken München-Gauting und Helmholtz Zentrum München, Max-Lebsche-Platz 31, 81377 Munich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2019.03.041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561722PMC
June 2019

Viruses.STRING: A Virus-Host Protein-Protein Interaction Database.

Viruses 2018 09 23;10(10). Epub 2018 Sep 23.

Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, DK-2200 Copenhagen N, Danmark.

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http://www.mdpi.com/1999-4915/10/10/519
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http://dx.doi.org/10.3390/v10100519DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213343PMC
September 2018

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.

Bioinformatics 2017 Dec;33(23):3808-3810

Department of Molecular Life Sciences, and Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btx517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860325PMC
December 2017

Effects of oral antibiotics and isotretinoin on the murine gut microbiota.

Int J Antimicrob Agents 2017 Sep 6;50(3):342-351. Epub 2017 Jul 6.

Division of Gastroenterology and Hepatology, University Hospital Zurich, University of Zurich, Zurich, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.ijantimicag.2017.03.017DOI Listing
September 2017

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43.

Cell Rep 2017 05;19(5):1056-1067

MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK; UCL Institute of Neurology, Queen Square, London WC1N 3BG, UK; The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.04.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437728PMC
May 2017

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper.

Mol Biol Evol 2017 08;34(8):2115-2122

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1093/molbev/msx148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850834PMC
August 2017

Cell-wide analysis of protein thermal unfolding reveals determinants of thermostability.

Science 2017 02;355(6327)

Institute of Biochemistry, Department of Biology, ETH Zurich (ETHZ), CH-8093 Zurich, Switzerland.

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http://dx.doi.org/10.1126/science.aai7825DOI Listing
February 2017

RAIN: RNA-protein Association and Interaction Networks.

Database (Oxford) 2017 10;2017. Epub 2017 Jan 10.

Center for Non-coding RNA in Technology and Health, University of Copenhagen, Copenhagen,, Groennegaardsvej 3, DK-1870 Frederiksberg C, Denmark.

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http://dx.doi.org/10.1093/database/baw167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5225963PMC
November 2017

A family of interaction-adjusted indices of community similarity.

ISME J 2017 03 9;11(3):791-807. Epub 2016 Dec 9.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zürich, Switzerland.

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http://dx.doi.org/10.1038/ismej.2016.139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322292PMC
March 2017

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Nucleic Acids Res 2017 01 18;45(D1):D362-D368. Epub 2016 Oct 18.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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http://dx.doi.org/10.1093/nar/gkw937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210637PMC
January 2017

STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.

Nucleic Acids Res 2016 Jan 20;44(D1):D380-4. Epub 2015 Nov 20.

Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307 Dresden

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http://dx.doi.org/10.1093/nar/gkv1277DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702904PMC
January 2016

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.

Nucleic Acids Res 2016 Jan 17;44(D1):D286-93. Epub 2015 Nov 17.

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany Germany Molecular Medicine Partnership Unit (MMPU), University Hospital Heidelberg and European Molecular Biology Laboratory, Heidelberg 69117, Germany Max Delbrück Centre for Molecular Medicine, Berlin 13125, Germany

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http://nar.oxfordjournals.org/content/early/2015/11/17/nar.g
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkv1248
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http://dx.doi.org/10.1093/nar/gkv1248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702882PMC
January 2016

Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes.

Syst Appl Microbiol 2015 Jul 16;38(5):330-9. Epub 2015 Jun 16.

Institute of Evolutionary Biology and Environmental Studies and Institute of Plant Biology, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.syapm.2015.05.006DOI Listing
July 2015

Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines.

Proteomics 2015 Sep 12;15(18):3163-8. Epub 2015 Mar 12.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Switzerland.

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http://dx.doi.org/10.1002/pmic.201400441DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6680238PMC
September 2015

Large-scale functional analysis of the roles of phosphorylation in yeast metabolic pathways.

Sci Signal 2014 Nov 25;7(353):rs6. Epub 2014 Nov 25.

Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule (ETH) Zürich, 8093 Zürich, Switzerland.

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http://dx.doi.org/10.1126/scisignal.2005602DOI Listing
November 2014

A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation.

PLoS One 2014 4;9(11):e111122. Epub 2014 Nov 4.

Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Max-Delbruck-Centre for Molecular Medicine, Berlin, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0111122PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4219706PMC
July 2015

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Nucleic Acids Res 2015 Jan 28;43(Database issue):D447-52. Epub 2014 Oct 28.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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http://dx.doi.org/10.1093/nar/gku1003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383874PMC
January 2015

A sentinel protein assay for simultaneously quantifying cellular processes.

Nat Methods 2014 Oct 7;11(10):1045-8. Epub 2014 Sep 7.

Institute of Biochemistry, Department of Biology, ETH Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1038/nmeth.3101DOI Listing
October 2014

Limits to robustness and reproducibility in the demarcation of operational taxonomic units.

Environ Microbiol 2015 May 29;17(5):1689-706. Epub 2014 Sep 29.

Institute for Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Winterthurerstrasse 190, Zürich, 8057, Switzerland.

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http://doi.wiley.com/10.1111/1462-2920.12610
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http://dx.doi.org/10.1111/1462-2920.12610DOI Listing
May 2015

Genome-wide small interfering RNA screens reveal VAMP3 as a novel host factor required for Uukuniemi virus late penetration.

J Virol 2014 Aug 21;88(15):8565-78. Epub 2014 May 21.

Institute of Biochemistry, ETH Zurich, Zurich, Switzerland INRS-Institut Armand-Frappier, Université du Québec, Laval, Québec, Canada

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http://dx.doi.org/10.1128/JVI.00388-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4135934PMC
August 2014

Ecological consistency of SSU rRNA-based operational taxonomic units at a global scale.

PLoS Comput Biol 2014 Apr 24;10(4):e1003594. Epub 2014 Apr 24.

Institute for Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Zürich, Switzerland.

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http://dx.doi.org/10.1371/journal.pcbi.1003594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998914PMC
April 2014

eggNOG v4.0: nested orthology inference across 3686 organisms.

Nucleic Acids Res 2014 Jan 1;42(Database issue):D231-9. Epub 2013 Dec 1.

European Molecular Biology Laboratory, Computational Biology Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany, University of Zurich and Swiss Institute of Bioinformatics, Institute of Molecular Life Sciences, Winterthurerstrasse 190, 8057 Zurich, Switzerland, Institute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109-5234, USA, Bioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), C/Dr. Aiguader 88, 08003 Barcelona, Spain, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain, CUBE-Division of Computational Systems Biology, Department of Microbiology and Ecosystem Science, University of Vienna, Althanstraße 14, 1090 Vienna, Austria, Institute of Biological, Environmental & Rural Sciences, Aberystwyth University, Penglais, Aberystwyth, Ceredigion, SY23 3FG, UK, Biotechnology Center, TU Dresden, 01062 Dresden, Germany, Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200, Copenhagen N, Denmark and Max-Delbrück-Centre for Molecular Medicine, Robert-Rössle-Strasse 10, 13092 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkt1253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964997PMC
January 2014

STITCH 4: integration of protein-chemical interactions with user data.

Nucleic Acids Res 2014 Jan 28;42(Database issue):D401-7. Epub 2013 Nov 28.

Biotechnology Center, TU Dresden, 01062 Dresden, Germany, Institute of Molecular Life Sciences, University of Zurich and Swiss Institute of Bioinformatics, Winterthurerstrasse 190, 8057 Zurich, Switzerland, Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen N, Denmark, European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany and Max-Delbrück-Centre for Molecular Medicine, Robert-Rössle-Strasse 10, 13092 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkt1207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964996PMC
January 2014

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences.

Bioinformatics 2014 Jan 9;30(2):287-8. Epub 2013 Nov 9.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btt657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3892691PMC
January 2014

STRING v9.1: protein-protein interaction networks, with increased coverage and integration.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D808-15. Epub 2012 Nov 29.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Switzerland.

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http://dx.doi.org/10.1093/nar/gks1094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531103PMC
January 2013

High confidence prediction of essential genes in Burkholderia cenocepacia.

PLoS One 2012 29;7(6):e40064. Epub 2012 Jun 29.

Department of Microbiology, Institute of Plant Biology, University of Zurich, Zurich, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0040064PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3386938PMC
November 2012

Bacterial anoxygenic photosynthesis on plant leaf surfaces.

Environ Microbiol Rep 2012 Apr 16;4(2):209-16. Epub 2012 Jan 16.

Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel Department of Plant and Environmental Sciences, Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem, Jerusalem 91904, Israel Bioinformatics Knowledge Unit, Lorry I. Lokey Interdisciplinary Center for Life Sciences and Engineering, Technion - Israel Institute of Technology, Haifa 32000, Israel Faculty of Science, Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland Institute of Microbiology, Eidgenössische Technische Hochschule Zurich, Wolfgang-Pauli-Strasse 10, 8093 Zurich, Switzerland Institute of Microbiology, Department of Phototrophic Microorganisms - ALGATECH, 379 81 Třeboň, Czech Republic.

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http://dx.doi.org/10.1111/j.1758-2229.2011.00323.xDOI Listing
April 2012

The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland.

Proteomics 2012 Feb;12(3):346-50

Institute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland; Quantitative Model Organism Proteomics, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1002/pmic.201290015DOI Listing
February 2012

STITCH 3: zooming in on protein-chemical interactions.

Nucleic Acids Res 2012 Jan 9;40(Database issue):D876-80. Epub 2011 Nov 9.

Biotechnology Center, TU Dresden, 01062 Dresden, Germany.

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http://dx.doi.org/10.1093/nar/gkr1011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245073PMC
January 2012

Microbial rhodopsins on leaf surfaces of terrestrial plants.

Environ Microbiol 2012 Jan 1;14(1):140-6. Epub 2011 Sep 1.

Faculty of Biology, Lorry I Lokey Interdisciplinary Center for Life Sciences and Engineering, Faculty of Computer Science, Technion - Israel Institute of Technology, Haifa 32000, Israel.

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http://doi.wiley.com/10.1111/j.1462-2920.2011.02554.x
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http://dx.doi.org/10.1111/j.1462-2920.2011.02554.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608849PMC
January 2012

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Nucleic Acids Res 2011 Jan 2;39(Database issue):D561-8. Epub 2010 Nov 2.

Faculty of Health Sciences, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Denmark.

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http://dx.doi.org/10.1093/nar/gkq973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013807PMC
January 2011

MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies.

BMC Genomics 2010 Aug 5;11:461. Epub 2010 Aug 5.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, Switzerland.

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http://dx.doi.org/10.1186/1471-2164-11-461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091657PMC
August 2010

A global network of coexisting microbes from environmental and whole-genome sequence data.

Genome Res 2010 Jul 10;20(7):947-59. Epub 2010 May 10.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, CH-8057 Zürich, Switzerland.

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http://dx.doi.org/10.1101/gr.104521.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2892096PMC
July 2010

Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes.

Curr Biol 2010 Mar 11;20(6):506-12. Epub 2010 Mar 11.

Institute of Plant Biology and Zürich-Basel Plant Science Center, University of Zürich, Zollikerstrasse 107, 8008 Zürich, Switzerland.

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http://dx.doi.org/10.1016/j.cub.2010.01.051DOI Listing
March 2010

Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome.

Proteomics 2010 Mar;10(6):1297-306

Institute of Molecular Life Sciences, University of Zurich, Switzerland.

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http://dx.doi.org/10.1002/pmic.200900414DOI Listing
March 2010

STITCH 2: an interaction network database for small molecules and proteins.

Nucleic Acids Res 2010 Jan 6;38(Database issue):D552-6. Epub 2009 Nov 6.

Biotechnology Center, TU Dresden, 01062 Dresden, Germany.

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http://dx.doi.org/10.1093/nar/gkp937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808890PMC
January 2010

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria.

Proc Natl Acad Sci U S A 2009 Sep 4;106(38):16428-33. Epub 2009 Sep 4.

Institute of Microbiology, Eidgenössische Technische Hochschule Zurich, Wolfgang-Pauli-Strasse 10, 8093 Zurich, Switzerland.

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http://dx.doi.org/10.1073/pnas.0905240106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2738620PMC
September 2009

The hedgehog signaling pathway: where did it come from?

PLoS Biol 2009 Jun 30;7(6):e1000146. Epub 2009 Jun 30.

Institute of Molecular Biology, Universität Zürich, Zürich, Switzerland.

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http://dx.doi.org/10.1371/journal.pbio.1000146DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2698682PMC
June 2009

STITCH: interaction networks of chemicals and proteins.

Nucleic Acids Res 2008 Jan 15;36(Database issue):D684-8. Epub 2007 Dec 15.

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkm795DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238848PMC
January 2008

Termites in the woodwork.

Genome Biol 2007 ;8(11):229

Institute of Molecular Biology and Swiss Institute of Bioinformatics, University of Zurich, Winterthurerstrasse, 8057 Zurich, Switzerland.

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http://dx.doi.org/10.1186/gb-2007-8-11-229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2258192PMC
August 2008

eggNOG: automated construction and annotation of orthologous groups of genes.

Nucleic Acids Res 2008 Jan 16;36(Database issue):D250-4. Epub 2007 Oct 16.

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkm796DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238944PMC
January 2008

Sequence-based factors influencing the expression of heterologous genes in the yeast Pichia pastoris--A comparative view on 79 human genes.

J Biotechnol 2007 May 28;130(1):1-10. Epub 2007 Feb 28.

Berlin University of Technology, Institute for Biotechnology, Department of Microbiology and Genetics, Gustav-Meyer-Allee 25, D-13355 Berlin, Germany.

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http://linkinghub.elsevier.com/retrieve/pii/S016816560700167
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http://dx.doi.org/10.1016/j.jbiotec.2007.02.019DOI Listing
May 2007

Prediction of effective genome size in metagenomic samples.

Genome Biol 2007 ;8(1):R10

European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

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http://dx.doi.org/10.1186/gb-2007-8-1-r10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839125PMC
April 2007

STRING 7--recent developments in the integration and prediction of protein interactions.

Nucleic Acids Res 2007 Jan 10;35(Database issue):D358-62. Epub 2006 Nov 10.

European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkl825DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669762PMC
January 2007

Comparative analysis of environmental sequences: potential and challenges.

Philos Trans R Soc Lond B Biol Sci 2006 Mar;361(1467):519-23

European Molecular Biology Laboratory Meyerhofstrasse 1, Heidelberg 69117, Germany.

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http://dx.doi.org/10.1098/rstb.2005.1809DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1609345PMC
March 2006

Identification and analysis of evolutionarily cohesive functional modules in protein networks.

Genome Res 2006 Mar 31;16(3):374-82. Epub 2006 Jan 31.

The European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1101/gr.4336406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1415216PMC
March 2006

Environments shape the nucleotide composition of genomes.

EMBO Rep 2005 Dec;6(12):1208-13

European Molecular Biology Laboratory, Heidelberg, Germany.

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http://dx.doi.org/10.1038/sj.embor.7400538DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1369203PMC
December 2005

Consistency of genome-based methods in measuring Metazoan evolution.

FEBS Lett 2005 Jun 18;579(15):3355-61. Epub 2005 Apr 18.

EMBL Heidelberg, Meyerhofstrasse 1, D-69117 Heidelberg, Germany.

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http://dx.doi.org/10.1016/j.febslet.2005.04.006DOI Listing
June 2005

Comparative metagenomics of microbial communities.

Science 2005 Apr;308(5721):554-7

Department of Energy (DOE) Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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http://dx.doi.org/10.1126/science.1107851DOI Listing
April 2005

Complex genomic rearrangements lead to novel primate gene function.

Genome Res 2005 Mar 14;15(3):343-51. Epub 2005 Feb 14.

European Molecular Biology Laboratory, 69012 Heidelberg, Germany.

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http://dx.doi.org/10.1101/gr.3266405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC551560PMC
March 2005

Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes.

Nucleic Acids Res 2004 1;32(21):6321-6. Epub 2004 Dec 1.

EMBL, 69012 Heidelberg, Meyerhofstrasse 1 and Max-Delbrueck-Centrum, Robert-Roessle-Strasse 10, D-13092 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkh973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC535681PMC
December 2004