Christian Rinke

Christian Rinke

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Christian Rinke

Christian Rinke

Publications by authors named "Christian Rinke"

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36Publications

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Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.).

ISME J 2020 Mar;14(3):878

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia.

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http://dx.doi.org/10.1038/s41396-019-0556-zDOI Listing
March 2020

Defining the human gut host-phage network through single-cell viral tagging.

Nat Microbiol 2019 12 5;4(12):2192-2203. Epub 2019 Aug 5.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.1038/s41564-019-0526-2DOI Listing
December 2019

Single-Cell Genomics of Microbial Dark Matter.

Authors:
Christian Rinke

Methods Mol Biol 2018 ;1849:99-111

Australian Centre for Ecogenomics, University of Queensland, Brisbane, QLD, Australia.

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http://link.springer.com/10.1007/978-1-4939-8728-3_7
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http://dx.doi.org/10.1007/978-1-4939-8728-3_7DOI Listing
July 2019

The importance of designating type material for uncultured taxa.

Syst Appl Microbiol 2019 Jan 18;42(1):15-21. Epub 2018 Jul 18.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, QLD 4072, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.syapm.2018.07.003DOI Listing
January 2019

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.

Nat Biotechnol 2018 11 27;36(10):996-1004. Epub 2018 Aug 27.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Queensland, Australia.

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http://dx.doi.org/10.1038/nbt.4229DOI Listing
November 2018

Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Nat Microbiol 2018 Feb;3(2):253

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.

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http://dx.doi.org/10.1038/s41564-017-0083-5DOI Listing
February 2018

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Nat Microbiol 2017 Nov 11;2(11):1533-1542. Epub 2017 Sep 11.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Queensland, 4072, Australia.

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http://dx.doi.org/10.1038/s41564-017-0012-7DOI Listing
November 2017

A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities.

Nat Microbiol 2017 Oct 28;2(10):1344-1349. Epub 2017 Aug 28.

Department of Civil and Environmental Engineering, Ralph M. Parsons Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.

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http://dx.doi.org/10.1038/s41564-017-0010-9DOI Listing
October 2017

acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data.

BMC Bioinformatics 2016 Dec 20;17(1):543. Epub 2016 Dec 20.

CITEC centre of excellence, Bielefeld University, Inspiration 1, Bielefeld, 33619, Germany.

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http://dx.doi.org/10.1186/s12859-016-1397-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5168860PMC
December 2016

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

PeerJ 2016 22;4:e2486. Epub 2016 Sep 22.

Australian Centre for Ecogenomics/School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, QLD, Australia; Institute for Molecular Bioscience, University of Queensland, Brisbane, QLD, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5036114PMC
http://dx.doi.org/10.7717/peerj.2486DOI Listing
October 2016

In Silico Analysis of the Metabolic Potential and Niche Specialization of Candidate Phylum "Latescibacteria" (WS3).

PLoS One 2015 3;10(6):e0127499. Epub 2015 Jun 3.

Department of Microbiology and Molecular Genetics, Oklahoma State University Stillwater, Oklahoma, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0127499PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4454575PMC
February 2016

ProDeGe: a computational protocol for fully automated decontamination of genomes.

ISME J 2016 Jan 9;10(1):269-72. Epub 2015 Jun 9.

Prokaryotic Super Program, Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.

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http://dx.doi.org/10.1038/ismej.2015.100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681846PMC
January 2016

Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor.

ISME J 2015 Aug 23;9(8):1710-22. Epub 2015 Jan 23.

Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.

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http://dx.doi.org/10.1038/ismej.2014.256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511927PMC
August 2015

Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'.

ISME J 2015 Feb 1;9(2):447-60. Epub 2014 Aug 1.

Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA.

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http://dx.doi.org/10.1038/ismej.2014.141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4303637PMC
February 2015

Impact of single-cell genomics and metagenomics on the emerging view of extremophile "microbial dark matter".

Extremophiles 2014 Sep 12;18(5):865-75. Epub 2014 Aug 12.

School of Life Sciences, University of Nevada Las Vegas, 4004, 4505 Maryland Parkway, Las Vegas, NV, 89154-4004, USA,

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http://link.springer.com/10.1007/s00792-014-0664-7
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http://dx.doi.org/10.1007/s00792-014-0664-7DOI Listing
September 2014

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics.

Nat Protoc 2014 May 10;9(5):1038-48. Epub 2014 Apr 10.

Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.1038/nprot.2014.067DOI Listing
May 2014

Stop codon reassignments in the wild.

Science 2014 May;344(6186):909-13

Department of Energy Joint Genome Institute (DOE JGI), Walnut Creek, CA 94598, USA. Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1126/science.1250691DOI Listing
May 2014

An environmental bacterial taxon with a large and distinct metabolic repertoire.

Nature 2014 Feb 29;506(7486):58-62. Epub 2014 Jan 29.

1] Institute of Microbiology, Eidgenössische Technische Hochschule Zurich, Vladimir-Prelog-Weg 4, 8093 Zurich, Switzerland [2] Kekulé Institute of Organic Chemistry and Biochemistry, University of Bonn, Gerhard-Domagk-Strasse 1, 53121 Bonn, Germany.

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http://dx.doi.org/10.1038/nature12959DOI Listing
February 2014

Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges.

ISME J 2013 Dec 11;7(12):2287-300. Epub 2013 Jul 11.

Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Wuerzburg, Wuerzburg, Germany.

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http://www.nature.com/articles/ismej2013111
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http://dx.doi.org/10.1038/ismej.2013.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3834845PMC
December 2013

The effects of sulphide on growth and behaviour of the thiotrophic Zoothamnium niveum symbiosis.

Proc Biol Sci 2007 Sep;274(1623):2259-69

Department of Marine Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria.

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http://dx.doi.org/10.1098/rspb.2007.0631DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950315PMC
September 2007