Christian M Zmasek

Christian M Zmasek

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Christian M Zmasek

Christian M Zmasek

Publications by authors named "Christian M Zmasek"

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Classification of human Herpesviridae proteins using Domain-architecture Aware Inference of Orthologs (DAIO).

Virology 2019 03 6;529:29-42. Epub 2019 Jan 6.

J. Craig Venter Institute, La Jolla, CA 92037, USA; Department of Pathology, University of California, San Diego, CA 92093, USA; Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, CA 92037, USA. Electronic address:

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http://dx.doi.org/10.1016/j.virol.2019.01.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6502252PMC
March 2019

Phylogenomic analysis of glycogen branching and debranching enzymatic duo.

BMC Evol Biol 2014 Aug 23;14:183. Epub 2014 Aug 23.

Bioinformatics and Systems Biology Program, Sanford-Burnham Medical Research Institute, 10901 N, Torrey Pines Road, La Jolla 92037, CA, USA.

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http://dx.doi.org/10.1186/s12862-014-0183-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236520PMC
August 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

Divergent evolution of protein conformational dynamics in dihydrofolate reductase.

Nat Struct Mol Biol 2013 Nov 29;20(11):1243-9. Epub 2013 Sep 29.

1] Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California, USA. [2] Skaggs Institute for Chemical Biology, Scripps Research Institute, La Jolla, California, USA. [3].

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http://dx.doi.org/10.1038/nsmb.2676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3823643PMC
November 2013

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity.

Nucleic Acids Res 2013 Jul 15;41(Web Server issue):W22-8. Epub 2013 May 15.

Genome Resource and Analysis Unit, RIKEN Center for Developmental Biology, Kobe, Hyogo 650-0047, Japan.

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http://academic.oup.com/nar/article/41/W1/W22/1099639/aLeave
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http://dx.doi.org/10.1093/nar/gkt389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692103PMC
July 2013

This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes.

PLoS Comput Biol 2012 15;8(11):e1002701. Epub 2012 Nov 15.

Program in Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, USA.

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https://dx.plos.org/10.1371/journal.pcbi.1002701
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http://dx.doi.org/10.1371/journal.pcbi.1002701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499355PMC
April 2013

Evolution of the animal apoptosis network.

Cold Spring Harb Perspect Biol 2013 Mar 1;5(3):a008649. Epub 2013 Mar 1.

Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, California 92037, USA.

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http://dx.doi.org/10.1101/cshperspect.a008649DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3578353PMC
March 2013

Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires.

Genome Biol 2011 17;12(1):R4. Epub 2011 Jan 17.

Program in Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA 92037, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2011-12-1-r4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091302PMC
February 2012

TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog.

Dev Comp Immunol 2011 Apr 24;35(4):461-8. Epub 2010 Nov 24.

Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1016/j.dci.2010.11.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3085110PMC
April 2011

TOPSAN: a dynamic web database for structural genomics.

Nucleic Acids Res 2011 Jan 20;39(Database issue):D494-6. Epub 2010 Oct 20.

Joint Center for Structural Genomics, Bioinformatics Core, Sanford-Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1093/nar/gkq902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013775PMC
January 2011

Domain architecture evolution of pattern-recognition receptors.

Immunogenetics 2010 May 2;62(5):263-72. Epub 2010 Mar 2.

Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1007/s00251-010-0428-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2858798PMC
May 2010

phyloXML: XML for evolutionary biology and comparative genomics.

BMC Bioinformatics 2009 Oct 27;10:356. Epub 2009 Oct 27.

School of Informatics, Indiana University, Bloomington, IN 47408, USA.

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http://dx.doi.org/10.1186/1471-2105-10-356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774328PMC
October 2009

Evolution of the human ion channel set.

Comb Chem High Throughput Screen 2009 Jan;12(1):2-23

The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.2174/138620709787047957DOI Listing
January 2009

Novel genes dramatically alter regulatory network topology in amphioxus.

Genome Biol 2008 4;9(8):R123. Epub 2008 Aug 4.

Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/gb-2008-9-8-r123DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2575513PMC
December 2008

Surprising complexity of the ancestral apoptosis network.

Genome Biol 2007 ;8(10):R226

Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/gb-2007-8-10-r226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2246300PMC
May 2008

LumberJack: a heuristic tool for sequence alignment exploration and phylogenetic inference.

Bioinformatics 2004 Aug 25;20(12):1977-9. Epub 2004 Mar 25.

Department of Plant Biology, The University of Georgia, Athens 30602, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth180DOI Listing
August 2004

RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs.

BMC Bioinformatics 2002 May 16;3:14. Epub 2002 May 16.

Howard Hughes Medical Institute and Department of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC116988PMC
http://dx.doi.org/10.1186/1471-2105-3-14DOI Listing
May 2002