Publications by authors named "Christian Iseli"

33Publications

Neighbor predation linked to natural competence fosters the transfer of large genomic regions in .

Elife 2019 09 3;8. Epub 2019 Sep 3.

Laboratory of Molecular Microbiology, Global Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (Swiss Federal Institute of Technology Lausanne; EPFL), Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7554/eLife.48212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6783263PMC
September 2019

MAR-Mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering.

Biotechnol Bioeng 2017 02 3;114(2):384-396. Epub 2016 Oct 3.

Department of Fundamental Microbiology, Institute of Biotechnology, University of Lausanne, and Center for Biotechnology UNIL-EPFL, Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bit.26086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5215416PMC
February 2017

ZFN-site searches genomes for zinc finger nuclease target sites and off-target sites.

BMC Bioinformatics 2011 May 13;12:152. Epub 2011 May 13.

University of Iowa School of Medicine, Department of Internal Medicine, Iowa City, Iowa 52245, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-12-152DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3113941PMC
May 2011

Ultra high throughput sequencing excludes MDH1 as candidate gene for RP28-linked retinitis pigmentosa.

Mol Vis 2009 Dec 8;15:2627-33. Epub 2009 Dec 8.

Department of Medical Genetics, University of Lausanne, Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790479PMC
December 2009

Fourmidable: a database for ant genomics.

BMC Genomics 2009 Jan 6;10. Epub 2009 Jan 6.

Department of Ecology and Evolution, Biophore, University of Lausanne, Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-10-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2639375PMC
January 2009

Probabilistic base calling of Solexa sequencing data.

BMC Bioinformatics 2008 Oct 13;9:431. Epub 2008 Oct 13.

School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-9-431DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2575221PMC
October 2008

Indexing strategies for rapid searches of short words in genome sequences.

PLoS One 2007 Jun 27;2(6):e579. Epub 2007 Jun 27.

Ludwig Institute for Cancer Research, Bâtiment Génopode, Université de Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Bátiment Génopode, Université de Lausanne, Lausanne, Switzerland. Christian.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000579PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1894650PMC
June 2007

Rapid evolution of cancer/testis genes on the X chromosome.

BMC Genomics 2007 May 23;8:129. Epub 2007 May 23.

Ludwig Institute for Cancer Research and Swiss Institute of Bioinformatics, Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-8-129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1890293PMC
May 2007

Similarities and differences of polyadenylation signals in human and fly.

BMC Genomics 2006 Jul 12;7:176. Epub 2006 Jul 12.

Swiss Institute of Bioinformatics, Batiment Genopode, UNIL, 1015 Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-7-176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1574307PMC
July 2006

Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome.

Genes Chromosomes Cancer 2006 Apr;45(4):392-400

Weill Medical College of Cornell University, New York, New York 10021, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/gcc.20298DOI Listing
April 2006

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

Genome Res 2005 Jul;15(7):1007-14

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.4041005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1172045PMC
July 2005

trome, trEST and trGEN: databases of predicted protein sequences.

Nucleic Acids Res 2004 Jan;32(Database issue):D509-11

Swiss Institute of Bioinformatics, Ludwig Institute for Cancer Research, Chemin des Boveresses 155, 1066 Epalinges s/Lausanne, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkh067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308801PMC
January 2004

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.

Authors:
Helena Brentani Otávia L Caballero Anamaria A Camargo Aline M da Silva Wilson Araújo da Silva Emmanuel Dias Neto Marco Grivet Arthur Gruber Pedro Edson Moreira Guimaraes Winston Hide Christian Iseli C Victor Jongeneel Janet Kelso Maria Aparecida Nagai Elida Paula Benquique Ojopi Elisson C Osorio Eduardo M R Reis Gregory J Riggins Andrew John George Simpson Sandro de Souza Brian J Stevenson Robert L Strausberg Eloiza H Tajara Sergio Verjovski-Almeida Marcio Luis Acencio Mário Henrique Bengtson Fabiana Bettoni Walter F Bodmer Marcelo R S Briones Luiz Paulo Camargo Webster Cavenee Janete M Cerutti Luis Eduardo Coelho Andrade Paulo César Costa dos Santos Maria Cristina Ramos Costa Israel Tojal da Silva Marcos Roberto H Estécio Karine Sa Ferreira Frank B Furnari Milton Faria Pedro A F Galante Gustavo S Guimaraes Adriano Jesus Holanda Edna Teruko Kimura Maarten R Leerkes Xin Lu Rui M B Maciel Elizabeth A L Martins Katlin Brauer Massirer Analy S A Melo Carlos Alberto Mestriner Elisabete Cristina Miracca Leandro Lorenco Miranda Francisco G Nobrega Paulo S Oliveira Apua C M Paquola José Rodrigo C Pandolfi Maria Ines de Moura Campos Pardini Fabio Passetti John Quackenbush Beatriz Schnabel Mari Cleide Sogayar Jorge E Souza Sandro R Valentini Andre C Zaiats Elisabete Jorge Amaral Liliane A T Arnaldi Amelia Goes de Araújo Simone Aparecida de Bessa David C Bicknell Maria Eugenia Ribeiro de Camaro Dirce Maria Carraro Helaine Carrer Alex F Carvalho Christian Colin Fernando Costa Cyntia Curcio Ismael Dale Cotrim Guerreiro da Silva Neusa Pereira da Silva Márcia Dellamano Hamza El-Dorry Enilza Maria Espreafico Ari José Scattone Ferreira Cristiane Ayres Ferreira Maria Angela H Z Fortes Angelita Habr Gama Daniel Giannella-Neto Maria Lúcia C C Giannella Ricardo R Giorgi Gustavo Henrique Goldman Maria Helena S Goldman Christine Hackel Paulo Lee Ho Elza Myiuki Kimura Luiz Paulo Kowalski Jose E Krieger Luciana C C Leite Ademar Lopes Ana Mercedes S C Luna Alan Mackay Suely Kazue Nagahashi Mari Adriana Aparecida Marques Waleska K Martins André Montagnini Mario Mourão Neto Ana Lucia T O Nascimento A Munro Neville Marina P Nobrega Mike J O'Hare Audrey Yumi Otsuka Anna Izabel Ruas de Melo Maria Luisa Paco-Larson Gonçalo Guimarães Pereira Neusa Pereira da Silva Joao Bosco Pesquero Juliana Gilbert Pessoa Paula Rahal Claudia Aparecida Rainho Vanderlei Rodrigues Silvia Regina Rogatto Camila Malta Romano Janaina Gusmao Romeiro Benedito Mauro Rossi Monica Rusticci Renata Guerra de Sá Simone Cristina Sant' Anna Miriam L Sarmazo Teresa Cristina de Lima E Silva Fernando Augusto Soares Maria de Fátima Sonati Josane de Freitas Sousa Diana Queiroz Valéria Valente André Luiz Vettore Fabiola Elizabeth Villanova Marco Antonio Zago Heloisa Zalcberg

Proc Natl Acad Sci U S A 2003 Nov 30;100(23):13418-23. Epub 2003 Oct 30.

Laboratorio de Genética Molecular do Cancer, Departmento de Radiologia, Universidade de São Paulo, Travessa da Rua Dr. Ovídeo Pires de Campos S/N, 4deg, Brazil.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1233632100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC263829PMC
November 2003

Use of transcriptome data to unravel the fine structure of genes involved in sepsis.

J Infect Dis 2003 Jun;187 Suppl 2:S308-14

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, Epalinges, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1086/374755DOI Listing
June 2003

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing.

Proc Natl Acad Sci U S A 2003 Apr 1;100(8):4702-5. Epub 2003 Apr 1.

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1066 Epalinges, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0831040100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153619PMC
April 2003